Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,978,570 |
(G)6→7 |
coding (71/1386 nt) |
yifK → |
putative amino acid/amine transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,978,564 | 1 | . | G | 98.4%
| 575.3
/ 1.8
| 186 | coding (65/1386 nt) | yifK | putative amino acid/amine transport protein |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (89/94); total (91/95) |
| Fisher's exact test for biased strand distribution p-value = 6.15e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 |
Only 100 of 238 total aligned reads displayed.
AAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATC > NC_000913/3978472‑3978652
|
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t < 1:4155885/93‑1 (MQ=255)
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t < 1:2211168/93‑1 (MQ=255)
aaaGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑t < 1:2060131/93‑1 (MQ=255)
aGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑gg < 1:1668010/93‑1 (MQ=255)
gCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg > 2:289475/1‑93 (MQ=255)
gCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg > 2:2647688/1‑93 (MQ=255)
gCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg < 1:1645202/93‑1 (MQ=255)
cATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑g < 2:1588361/93‑1 (MQ=255)
cATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑g < 2:2340968/93‑1 (MQ=255)
tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggg > 1:1195080/1‑93 (MQ=255)
tGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggg > 1:4110568/1‑93 (MQ=255)
gCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑gggg < 2:1470367/93‑2 (MQ=255)
cAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggggc > 2:136746/1‑91 (MQ=255)
aaaCACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggggca > 1:1698614/1‑90 (MQ=255)
aacacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggggcac > 2:3695779/1‑89 (MQ=255)
aacacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑ggg‑ggggcac > 2:1098209/1‑89 (MQ=255)
cacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCa < 2:1732894/93‑1 (MQ=255)
cacaacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCa < 2:3630075/93‑1 (MQ=255)
aacgcGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTg > 2:2566183/1‑93 (MQ=255)
aacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTg < 1:2798597/93‑1 (MQ=255)
aacacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTg > 1:2852416/1‑93 (MQ=255)
acacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTgg < 2:4044503/93‑1 (MQ=255)
acacGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTgg > 1:635171/1‑93 (MQ=255)
acGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCg > 2:1258782/1‑93 (MQ=255)
cGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGt < 1:484528/93‑1 (MQ=255)
cGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGt > 2:4269181/1‑93 (MQ=255)
ggATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCgg > 2:3953257/1‑93 (MQ=255)
ggATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCgg > 2:900510/1‑93 (MQ=255)
ggATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCgg > 1:3156592/1‑93 (MQ=255)
tttATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCt > 1:3342122/1‑93 (MQ=255)
tGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGttt > 1:2435014/1‑93 (MQ=255)
ggCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTa < 2:1902196/93‑1 (MQ=255)
gCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTAt < 1:1447009/93‑1 (MQ=255)
cAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATg < 2:440626/93‑1 (MQ=255)
gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggg < 1:848396/93‑1 (MQ=255)
gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggg < 1:2651702/93‑1 (MQ=255)
gATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggg < 1:2625986/93‑1 (MQ=255)
aTAACAACCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATAGCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATgggg < 2:2620511/93‑1 (MQ=255)
tAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggggg < 2:2777782/93‑1 (MQ=255)
tAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggggg > 1:4273528/1‑93 (MQ=255)
aaacaacCCAGAGTTACAGCGGGGCCTGAAACTCCGAAATATCGACCTAACCCCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATggggg < 2:3874970/92‑1 (MQ=255)
aaCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgc < 2:21054/93‑1 (MQ=255)
aCAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc > 1:3265773/1‑93 (MQ=255)
aaaCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:1487770/1‑93 (MQ=255)
aaCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc > 2:4558434/1‑93 (MQ=255)
aaCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgcc > 1:686993/1‑93 (MQ=255)
cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGt > 1:3620688/1‑93 (MQ=255)
agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa > 2:3144097/1‑93 (MQ=255)
agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAcc > 2:2390102/1‑93 (MQ=255)
cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCt < 1:1215082/93‑1 (MQ=255)
cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCt < 2:470504/93‑1 (MQ=255)
cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCt < 2:1195212/93‑1 (MQ=255)
tACAGCGTGGGCTGGAAGCTCGACATATTGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGGCGCCAGTACCCTg > 2:4088964/1‑93 (MQ=255)
tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTg > 1:559268/1‑93 (MQ=255)
aGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGaaa > 2:3214762/1‑93 (MQ=255)
gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAt > 1:1384956/1‑93 (MQ=255)
gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAt < 2:2668574/93‑1 (MQ=255)
gCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑GGGAGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAt > 1:2509744/1‑93 (MQ=255)
ggTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATg < 2:516081/92‑1 (MQ=255)
gggCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggc > 1:954572/1‑93 (MQ=255)
ggCTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggcc < 1:1058744/93‑1 (MQ=255)
cTGGAAGCTCGACATATCGAACTCATCGCCCGG‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTAGGGGGGCCGCCAGTACCCTGAAATgggccgg < 2:2079873/93‑1 (MQ=255)
cTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgg < 2:3479104/93‑1 (MQ=255)
cTGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgg < 2:1043685/93‑1 (MQ=255)
tGGAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccggg > 1:1299303/1‑93 (MQ=255)
ggAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggc > 1:3612579/1‑93 (MQ=255)
ggAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggc > 1:1361984/1‑93 (MQ=255)
ggAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggc > 1:1147626/1‑93 (MQ=255)
gAAGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATgggccgggcc > 1:406382/1‑93 (MQ=255)
aaGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCa < 2:152466/93‑1 (MQ=255)
aGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCTCCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt < 1:2302011/93‑1 (MQ=255)
aGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt < 1:873328/93‑1 (MQ=255)
aGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt < 2:1551927/93‑1 (MQ=255)
aGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAt > 1:3042966/1‑93 (MQ=255)
aGCTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGCGCCAt > 1:3711092/1‑93 (MQ=255)
cTCGCCATATCGAACTCATCGCCC‑TGGGG‑GGGCATCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATcc < 1:4318575/93‑1 (MQ=255)
cTCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATcc < 1:962288/93‑1 (MQ=255)
tCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCg > 1:1832506/1‑93 (MQ=255)
tCGACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCg > 1:2169266/1‑93 (MQ=255)
gACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTa > 1:1103495/1‑93 (MQ=255)
gACATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTa < 1:2897567/93‑1 (MQ=255)
cATATCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAtt < 2:3400704/93‑1 (MQ=255)
atatCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttg > 2:4440542/1‑93 (MQ=255)
tatCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgt < 1:4007305/93‑1 (MQ=255)
tatCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGGACCCTGAAATGGGCCGGGCCATCCGTCttgt > 1:493910/1‑93 (MQ=255)
atCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgtt < 2:2688860/93‑1 (MQ=255)
tCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgttg < 1:4402440/93‑1 (MQ=255)
tCGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAttgttg < 1:1500202/93‑1 (MQ=255)
cGAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTgg < 1:3952478/93‑1 (MQ=255)
gAACTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGc > 2:3534165/1‑93 (MQ=255)
aaCTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc > 2:2402891/1‑93 (MQ=255)
aaCTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGcc < 1:2694529/93‑1 (MQ=255)
cTCATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCta < 2:3039758/93‑1 (MQ=255)
cATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCtata < 1:926465/93‑1 (MQ=255)
cATCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGCCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCtata < 2:167901/93‑1 (MQ=255)
tCGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatc > 1:300436/1‑93 (MQ=255)
cGCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGCGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatca < 2:1024423/93‑1 (MQ=255)
gCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat > 2:1146393/1‑93 (MQ=255)
gCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat < 2:3890257/93‑1 (MQ=255)
gCCC‑TGGGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATatcat > 2:724015/1‑93 (MQ=255)
|
AAAGCATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCC‑T‑GGG‑GGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATC > NC_000913/3978472‑3978652
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT > NC_000913/3978477‑3978663
|
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGATCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG < SRR4302535.4250500/94‑1 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG > SRR4302535.4138708/1‑94 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG < SRR4302535.4332592/94‑1 (MQ=60)
ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG > SRR4302535.1203638/1‑94 (MQ=60)
CAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGgca > SRR4302535.4206690/1‑91 (MQ=60)
CAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGGgca > SRR4302535.1710891/1‑91 (MQ=60)
ACACAACACGAGTATTTATGGCAGATAACAAACCAGAGCTACGGGGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCA < SRR4302535.2615937/94‑1 (MQ=60)
ACACAACACGAGGATTTATGGCAGATAACAAGCCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCA < SRR4302535.2057425/94‑1 (MQ=60)
ACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATT < SRR4302535.1531853/94‑1 (MQ=60)
ACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATT < SRR4302535.573186/94‑1 (MQ=60)
CAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTG > SRR4302535.2872625/1‑94 (MQ=60)
CAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTG < SRR4302535.364330/94‑1 (MQ=60)
AACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGG < SRR4302535.1813804/94‑1 (MQ=60)
AACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGG < SRR4302535.841061/94‑1 (MQ=60)
AACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGG > SRR4302535.639597/1‑94 (MQ=60)
AACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGG < SRR4302535.2818513/94‑1 (MQ=60)
ACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGC < SRR4302535.1195687/94‑1 (MQ=60)
CACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCG > SRR4302535.3329463/1‑94 (MQ=60)
CGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTC < SRR4302535.487924/94‑1 (MQ=60)
CGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTC < SRR4302535.1510880/94‑1 (MQ=60)
GAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCG > SRR4302535.3465210/1‑94 (MQ=60)
GAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCG > SRR4302535.2764896/1‑94 (MQ=60)
AGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGG > SRR4302535.2645547/1‑94 (MQ=60)
AGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGG > SRR4302535.3178510/1‑94 (MQ=60)
GGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGC > SRR4302535.737755/1‑94 (MQ=60)
ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCT > SRR4302535.1666226/1‑94 (MQ=60)
ATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCT > SRR4302535.3365410/1‑94 (MQ=60)
TTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTG > SRR4302535.1782069/1‑94 (MQ=60)
ATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTT > SRR4302535.2452554/1‑94 (MQ=60)
ATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTT < SRR4302535.2275155/94‑1 (MQ=60)
ATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTT < SRR4302535.962970/94‑1 (MQ=60)
GGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTAT < SRR4302535.3231745/94‑1 (MQ=60)
GGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTAT < SRR4302535.202992/94‑1 (MQ=60)
GCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATG < SRR4302535.1457358/94‑1 (MQ=60)
CAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGG < SRR4302535.4161418/94‑1 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGG < SRR4302535.2670698/94‑1 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGG < SRR4302535.854364/94‑1 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGG < SRR4302535.951306/94‑1 (MQ=60)
GATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGG < SRR4302535.2644805/94‑1 (MQ=60)
ATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGG > SRR4302535.4302781/1‑94 (MQ=60)
ATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGG > SRR4302535.121530/1‑94 (MQ=60)
AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCC > SRR4302535.3288459/1‑94 (MQ=60)
AACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATAGCCCTGGGG‑GGG‑CACCACTGACGTCGGCCTGTTTATGAGGGCC > SRR4302535.1367437/1‑94 (MQ=60)
CAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGC > SRR4302535.1498427/1‑94 (MQ=60)
AAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCC > SRR4302535.691806/1‑94 (MQ=60)
AAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCC > SRR4302535.904138/1‑94 (MQ=60)
AACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCA < SRR4302535.1439491/94‑1 (MQ=60)
AACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCA > SRR4302535.531730/1‑94 (MQ=60)
CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGT > SRR4302535.3645787/1‑94 (MQ=60)
CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGT > SRR4302535.364693/1‑94 (MQ=60)
AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC > SRR4302535.8574/1‑94 (MQ=60)
AGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTAC < SRR4302535.1534566/94‑1 (MQ=60)
AGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCC > SRR4302535.3127194/1‑94 (MQ=60)
GCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCT > SRR4302535.1189303/1‑94 (MQ=60)
ACTACAGGGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCT < SRR4302535.4433021/94‑1 (MQ=60)
CTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTG > SRR4302535.563177/1‑94 (MQ=60)
CTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTG < SRR4302535.1223797/94‑1 (MQ=60)
TACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCTCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGA > SRR4302535.2648593/1‑94 (MQ=60)
TACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCTAGTACTCTGA > SRR4302535.1447794/1‑94 (MQ=60)
AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT > SRR4302535.1394841/1‑94 (MQ=60)
AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT < SRR4302535.1694407/94‑1 (MQ=60)
AGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGAGGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAAT > SRR4302535.2527837/1‑94 (MQ=60)
GCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATG < SRR4302535.3992554/94‑1 (MQ=60)
CGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGG > SRR4302535.1111031/1‑94 (MQ=60)
TGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGC > SRR4302535.961337/1‑94 (MQ=60)
TGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGC > SRR4302535.4467742/1‑94 (MQ=60)
GGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCC < SRR4302535.2705636/94‑1 (MQ=60)
GGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCG > SRR4302535.3946817/1‑94 (MQ=60)
GGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCG < SRR4302535.1066285/94‑1 (MQ=60)
GCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGG < SRR4302535.2148490/94‑1 (MQ=60)
CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG < SRR4302535.1385877/94‑1 (MQ=60)
CTGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGG > SRR4302535.1308567/1‑94 (MQ=60)
TGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC > SRR4302535.4360601/1‑94 (MQ=60)
TGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC > SRR4302535.1371725/1‑94 (MQ=60)
TGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC > SRR4302535.3637630/1‑94 (MQ=60)
TGGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGC > SRR4302535.1155804/1‑94 (MQ=60)
TGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCC > SRR4302535.1130606/1‑94 (MQ=60)
GGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCC > SRR4302535.1238541/1‑94 (MQ=60)
GGAAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCC > SRR4302535.409227/1‑94 (MQ=60)
AAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCAT > SRR4302535.3064287/1‑94 (MQ=60)
AAGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGCGCCAT > SRR4302535.3736799/1‑94 (MQ=60)
AGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CTCCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATC < SRR4302535.2318483/94‑1 (MQ=60)
AGCTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATC < SRR4302535.879518/94‑1 (MQ=60)
CTCGCCATATCGAACTCATCGCCCTGGGG‑GGG‑CATCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG < SRR4302535.4348119/94‑1 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG < SRR4302535.969124/94‑1 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG > SRR4302535.1845729/1‑94 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG > SRR4302535.2089526/1‑94 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG > SRR4302535.2753295/1‑94 (MQ=60)
CTCGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCG > SRR4302535.2184805/1‑94 (MQ=60)
CGACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTA > SRR4302535.1111377/1‑94 (MQ=60)
GACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTAT < SRR4302535.2918059/94‑1 (MQ=60)
ACATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATT < SRR4302535.2468774/94‑1 (MQ=60)
ATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGT > SRR4302535.535218/1‑94 (MQ=60)
ATATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGGACCCTGAAATGGGCCGGGCCATCCGTCTTGT > SRR4302535.497374/1‑94 (MQ=60)
TATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTTTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTT < SRR4302535.3785108/94‑1 (MQ=60)
TATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTT < SRR4302535.4034722/94‑1 (MQ=60)
TATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTT > SRR4302535.665006/1‑94 (MQ=60)
ATCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTG < SRR4302535.3028925/94‑1 (MQ=60)
TCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGG < SRR4302535.4432569/94‑1 (MQ=60)
TCGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGG < SRR4302535.1510996/94‑1 (MQ=60)
CGAACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGC < SRR4302535.3979464/94‑1 (MQ=60)
AACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCT < SRR4302535.2890431/94‑1 (MQ=60)
AACTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCT < SRR4302535.2713788/94‑1 (MQ=60)
CTCATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCCGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTAT > SRR4302535.2925578/1‑94 (MQ=60)
CATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATAT < SRR4302535.3065398/94‑1 (MQ=60)
CATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATAT < SRR4302535.933028/94‑1 (MQ=60)
CTCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATC < SRR4302535.4084091/94‑1 (MQ=60)
ATCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATC > SRR4302535.302529/1‑94 (MQ=60)
TCGCCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCA < SRR4302535.4053919/94‑1 (MQ=60)
TCGCCCT‑GGG‑GGGCCACCATGGGCGTCGGCCTG‑TTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCAT < SRR4302535.909627/94‑1 (MQ=60)
gcccggGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATC < SRR4302535.1811988/88‑1 (MQ=60)
CCCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCG < SRR4302535.3743065/94‑1 (MQ=60)
CCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302535.665524/1‑94 (MQ=60)
CCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302535.3794044/1‑94 (MQ=60)
CCTGGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGC > SRR4302535.1065252/1‑94 (MQ=60)
tgGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCG > SRR4302535.2984917/3‑94 (MQ=60)
tgGGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCG > SRR4302535.1161668/3‑94 (MQ=60)
G‑GGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGG > SRR4302535.4519312/1‑94 (MQ=60)
G‑GGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGG > SRR4302535.3072750/1‑94 (MQ=60)
GGG‑GGG‑CACCATTAGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGG < SRR4302535.2698461/94‑1 (MQ=60)
GGG‑GGC‑CACCATTGGCGTCGCCCTGTTTATGGGGCCCGCCAGTACCCTGAAATGGGCCGGCCCATCCGTATTGTTGGCCTATATCATCGCCGGG < SRR4302535.283315/94‑1 (MQ=60)
G‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCT < SRR4302535.3797266/94‑1 (MQ=60)
GGT‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTG < SRR4302535.2363133/94‑1 (MQ=60)
GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTG < SRR4302535.3894628/94‑1 (MQ=60)
GG‑CACCATTGGCTTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGT < SRR4302535.2393031/94‑1 (MQ=60)
G‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT < SRR4302535.1512897/94‑1 (MQ=60)
G‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT < SRR4302535.3624637/94‑1 (MQ=60)
G‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT < SRR4302535.4102855/94‑1 (MQ=60)
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ATGCAAACACAACACGAGGATTTATGGCAGATAACAAACCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGG‑GGG‑CACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTACCCTGAAATGGGCCGGGCCATCCGTATTGTTGGCCTATATCATCGCCGGGCTGTT > NC_000913/3978477‑3978663
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
