Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,995,080	T→C	S95S (AGT→AGC)	yigB →	putative phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,995,080	0	T	C	100.0%	714.1 / NA	227	S95S (AGT→AGC)	yigB	putative phosphatase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (103/124); total (103/124)

Only 100 of 243 total aligned reads displayed.

ACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGTGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCT  >  NC_000913/3994990‑3995169

aCCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAgcgc                                                                                         <  1:153597/93‑1 (MQ=255)

  ccGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAg                                                                                       >  2:3768758/1‑93 (MQ=255)

  ccGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAg                                                                                       >  2:4090047/1‑93 (MQ=255)

   cGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAgg                                                                                      >  2:3682857/1‑93 (MQ=255)

    gagaTTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGgc                                                                                     <  2:439825/93‑1 (MQ=255)

     agaTTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGgcg                                                                                    >  2:314678/1‑93 (MQ=255)

     agaTTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGgcg                                                                                    <  1:1197853/93‑1 (MQ=255)

       aTTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGca                                                                                  >  1:1369444/1‑93 (MQ=255)

       aTTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGca                                                                                  <  2:4324644/93‑1 (MQ=255)

        tttATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGcac                                                                                 >  1:436208/1‑93 (MQ=255)

        tttATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGcac                                                                                 >  2:2954089/1‑93 (MQ=255)

         ttATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGcaca                                                                                >  2:2836801/1‑93 (MQ=255)

         ttATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGcaca                                                                                >  1:4106950/1‑93 (MQ=255)

          tATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCacac                                                                               >  1:1720373/1‑93 (MQ=255)

          tATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCacac                                                                               <  1:1323787/93‑1 (MQ=255)

               cgacgTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACgcagc                                                                          <  1:2115684/93‑1 (MQ=255)

               cgacgTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGACAGCGCAGGCGCACACgcagc                                                                          >  1:1792173/1‑93 (MQ=255)

                 gcgTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCaa                                                                        <  1:2569666/92‑1 (MQ=255)

                 acgTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCaa                                                                        <  2:4256945/93‑1 (MQ=255)

                  cgTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAAt                                                                       >  1:2790979/1‑93 (MQ=255)

                   gTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATg                                                                      >  2:1543682/1‑93 (MQ=255)

                   gTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATg                                                                      >  2:526131/1‑93 (MQ=255)

                     gACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGAt                                                                    >  1:4266901/1‑93 (MQ=255)

                     gACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGAt                                                                    <  2:1643301/93‑1 (MQ=255)

                     gACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGAt                                                                    >  1:617141/1‑93 (MQ=255)

                         cgcTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAAc                                                                <  1:2972474/93‑1 (MQ=255)

                         cgcTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAAc                                                                <  1:3461954/93‑1 (MQ=255)

                           cTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACtt                                                              <  1:960139/93‑1 (MQ=255)

                           cTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACtt                                                              >  2:646298/1‑93 (MQ=255)

                            tGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACttt                                                             >  1:1010098/1‑93 (MQ=255)

                             ggCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTg                                                            >  1:4451387/1‑93 (MQ=255)

                             ggCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTg                                                            <  2:555445/93‑1 (MQ=255)

                               ggTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGcc                                                          <  1:70490/92‑1 (MQ=255)

                               cGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGcc                                                          <  2:4504005/93‑1 (MQ=255)

                                 ttttCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCaa                                                        <  2:2766620/93‑1 (MQ=255)

                                  tttCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCaaa                                                       <  1:3512330/93‑1 (MQ=255)

                                   ttcgttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAAt                                                      <  2:2255818/93‑1 (MQ=255)

                                     cgttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATgg                                                    >  2:2022979/1‑93 (MQ=255)

                                     cgttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATgg                                                    <  1:741868/93‑1 (MQ=255)

                                     cgttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATgg                                                    <  1:191603/93‑1 (MQ=255)

                                      gttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgc                                                   <  2:860694/93‑1 (MQ=255)

                                      gttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgc                                                   <  2:1158357/93‑1 (MQ=255)

                                      gttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgc                                                   >  1:3615206/1‑93 (MQ=255)

                                      gttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgc                                                   <  1:3738403/93‑1 (MQ=255)

                                      gttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCACACACGCAGCAATGATCAACTTTGCCAAATGgc                                                   <  1:4018289/93‑1 (MQ=255)

                                      gttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGACGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATgga                                                   >  2:737191/1‑92 (MQ=255)

                                      gttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGGGCCGAAGAAGCCAGCGCAGGCGGACACGCAGCAATGATCAACTTTGCCAAATGgc                                                   >  1:934155/1‑93 (MQ=255)

                                       ttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgcg                                                  >  1:4341435/1‑93 (MQ=255)

                                       ttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgcg                                                  >  2:3627500/1‑93 (MQ=255)

                                       ttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgcg                                                  >  2:278711/1‑93 (MQ=255)

                                       ttcgATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGgcg                                                  >  2:1709096/1‑93 (MQ=255)

                                           aTTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGc                                              <  1:1020588/93‑1 (MQ=255)

                                            ttGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGcc                                             <  2:1570767/93‑1 (MQ=255)

                                                aCAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAAt                                         >  1:3890946/1‑93 (MQ=255)

                                                 cAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATc                                        <  1:2840796/93‑1 (MQ=255)

                                                 cAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATc                                        <  2:1132242/93‑1 (MQ=255)

                                                  aaGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCg                                       >  1:4223236/1‑93 (MQ=255)

                                                  aaGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCg                                       >  1:2666112/1‑93 (MQ=255)

                                                   aGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGa                                      >  1:3823596/1‑93 (MQ=255)

                                                    gCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGAc                                     <  2:2651568/93‑1 (MQ=255)

                                                      gATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGt                                   <  2:1826859/93‑1 (MQ=255)

                                                       aTGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTc                                  >  1:782572/1‑93 (MQ=255)

                                                       aTGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTc                                  >  1:4521937/1‑93 (MQ=255)

                                                        tGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTcc                                 <  1:195817/93‑1 (MQ=255)

                                                        tGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTcc                                 <  1:2101379/93‑1 (MQ=255)

                                                        tGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTcc                                 >  2:419404/1‑93 (MQ=255)

                                                        tGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTcc                                 <  1:502832/93‑1 (MQ=255)

                                                         gCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTccc                                <  2:3254435/93‑1 (MQ=255)

                                                          cTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCg                               <  1:3185923/93‑1 (MQ=255)

                                                            cGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCgca                             <  2:3462190/93‑1 (MQ=255)

                                                            cGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCgca                             <  1:2424707/93‑1 (MQ=255)

                                                            cGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCgca                             >  2:3805512/1‑93 (MQ=255)

                                                             gACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCgcag                            >  2:844126/1‑93 (MQ=255)

                                                              aCGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCgcagc                           >  2:3017748/1‑93 (MQ=255)

                                                               cGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCgcagca                          <  1:3676406/93‑1 (MQ=255)

                                                                gCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCaa                         <  1:2625143/93‑1 (MQ=255)

                                                                 cggggCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCaaa                        <  2:3322679/91‑1 (MQ=255)

                                                                 ccGGTCTGAGTGCCGAAGAAACCAGCGCAGGCGCACCCGCAGCAATGATCAACTTTGCCAAATGGCACAGCCGAATCGACGTCCCGCAGCaaa                        <  1:3004659/93‑1 (MQ=255)

                                                                 ccGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCaaa                        <  2:405032/93‑1 (MQ=255)

                                                                  cGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAAc                       <  1:3293185/93‑1 (MQ=255)

                                                                    ggCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTc                     <  1:4586965/93‑1 (MQ=255)

                                                                     gCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCa                    <  1:3232567/93‑1 (MQ=255)

                                                                     gCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCa                    <  2:1058523/93‑1 (MQ=255)

                                                                      cTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCAc                   <  2:1889686/93‑1 (MQ=255)

                                                                      cTGAGTACCAAAGAAGCCAGCACAGGCACAAACGCAGCAATGATCAACTTTGCCAAATGGCGCAGGCGAATCGACGTCCCGCAGCAAACTCAc                   <  2:1400595/93‑1 (MQ=255)

                                                                       tGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACg                  >  2:2893388/1‑93 (MQ=255)

                                                                       tGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGACCCGCAGCAAACTCAca                  >  1:3550882/1‑92 (MQ=255)

                                                                        gAGTGCCGAAGAACCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGa                 <  1:1073509/93‑1 (MQ=255)

                                                                         aGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGac                >  2:4033114/1‑93 (MQ=255)

                                                                            gCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACAcc             <  2:2229648/93‑1 (MQ=255)

                                                                              cGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCtt           >  1:1174643/1‑93 (MQ=255)

                                                                               gaagaaGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTa          <  1:269758/93‑1 (MQ=255)

                                                                               gaagaaGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTa          >  2:2422776/1‑93 (MQ=255)

                                                                                 agaagCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTaaa        >  1:3594590/1‑93 (MQ=255)

                                                                                 agaagCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTaaa        <  2:1099544/93‑1 (MQ=255)

                                                                                  gaagCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTaaaa       >  1:3403992/1‑93 (MQ=255)

                                                                                   aagCCAGCGCAGGCCCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAAc      <  1:3717083/93‑1 (MQ=255)

                                                                                    agCCAGCGCAGGCGCAGACGCCGCAATGATCAACTGTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACa     <  2:459567/93‑1 (MQ=255)

                                                                                       cAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGTCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCt  <  1:383964/93‑1 (MQ=255)

                                                                                       cAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCt  <  2:4422337/93‑1 (MQ=255)

ACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGTGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCT  >  NC_000913/3994990‑3995169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGTGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTGGCG  >  NC_000913/3994987‑3995173

GGAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGC                                                                                               >  SRR4302535.2774845/1‑94 (MQ=60)

GGAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGC                                                                                               >  SRR4302535.3053137/1‑94 (MQ=60)

GGAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGC                                                                                               <  SRR4302535.4660530/94‑1 (MQ=60)

GGAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGC                                                                                               <  SRR4302535.4334928/94‑1 (MQ=60)

 GACCCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCG                                                                                              <  SRR4302535.2616516/94‑1 (MQ=60)

 GAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCG                                                                                              >  SRR4302535.3965709/1‑94 (MQ=60)

 GAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCG                                                                                              <  SRR4302535.1901144/94‑1 (MQ=60)

   ACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCA                                                                                            <  SRR4302535.2684674/94‑1 (MQ=60)

   ACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCA                                                                                            <  SRR4302535.154677/94‑1 (MQ=60)

    CCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAG                                                                                           >  SRR4302535.3729932/1‑94 (MQ=60)

     CCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGATCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCATG                                                                                          >  SRR4302535.650656/1‑94 (MQ=60)

        AGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGC                                                                                       >  SRR4302535.782084/1‑94 (MQ=60)

        AGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGC                                                                                       >  SRR4302535.1117455/1‑94 (MQ=60)

        AGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGC                                                                                       <  SRR4302535.1206432/94‑1 (MQ=60)

         GATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCA                                                                                      >  SRR4302535.973977/1‑94 (MQ=60)

         GATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCA                                                                                      >  SRR4302535.1379231/1‑94 (MQ=60)

         GATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGAGCCGAAGAAGCAAGCGCATGCGCA                                                                                      >  SRR4302535.4273246/1‑94 (MQ=60)

          ATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCAC                                                                                     >  SRR4302535.439248/1‑94 (MQ=60)

          ATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCAC                                                                                     <  SRR4302535.844587/94‑1 (MQ=60)

          ATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCAC                                                                                     >  SRR4302535.4635045/1‑94 (MQ=60)

           TTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACA                                                                                    <  SRR4302535.1705971/94‑1 (MQ=60)

           TTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACA                                                                                    >  SRR4302535.4135070/1‑94 (MQ=60)

            TTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACAC                                                                                   <  SRR4302535.2692422/94‑1 (MQ=60)

            TTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACAC                                                                                   <  SRR4302535.3054073/94‑1 (MQ=60)

            TTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACAC                                                                                   >  SRR4302535.1732815/1‑94 (MQ=60)

             TATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACG                                                                                  >  SRR4302535.4593745/1‑94 (MQ=60)

             TATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACG                                                                                  <  SRR4302535.1333232/94‑1 (MQ=60)

              ATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGC                                                                                 <  SRR4302535.1897435/94‑1 (MQ=60)

                 ACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGC                                                                              <  SRR4302535.3473567/94‑1 (MQ=60)

                 ACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGACAGCGCAGGCGCACACGCAGC                                                                              >  SRR4302535.1805130/1‑94 (MQ=60)

                  CGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCA                                                                             <  SRR4302535.4228745/94‑1 (MQ=60)

                  CGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCA                                                                             <  SRR4302535.3739548/94‑1 (MQ=60)

                  CGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCA                                                                             <  SRR4302535.2130953/94‑1 (MQ=60)

                  CGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCA                                                                             <  SRR4302535.959391/94‑1 (MQ=60)

                   GACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAA                                                                            >  SRR4302535.1517610/1‑94 (MQ=60)

                   GACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAA                                                                            >  SRR4302535.3296136/1‑94 (MQ=60)

                    GCGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAAT                                                                           <  SRR4302535.2588146/94‑1 (MQ=60)

                    ACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAAT                                                                           >  SRR4302535.2810842/1‑94 (MQ=60)

                     CGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATG                                                                          >  SRR4302535.2452059/1‑94 (MQ=60)

                      GTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGA                                                                         <  SRR4302535.2323242/94‑1 (MQ=60)

                       TGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGAT                                                                        >  SRR4302535.4296119/1‑94 (MQ=60)

                       TGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGAT                                                                        >  SRR4302535.621434/1‑94 (MQ=60)

                        GACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATC                                                                       <  SRR4302535.2861338/94‑1 (MQ=60)

                         ACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGACAGCGCAGGCGCACACGCAGCAATGATCA                                                                      >  SRR4302535.2006349/1‑94 (MQ=60)

                            CGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACT                                                                   <  SRR4302535.2993337/94‑1 (MQ=60)

                            CGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACT                                                                   <  SRR4302535.3486023/94‑1 (MQ=60)

                             GCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTT                                                                  >  SRR4302535.349160/1‑94 (MQ=60)

                              CTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTT                                                                 <  SRR4302535.966957/94‑1 (MQ=60)

                              CTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTT                                                                 >  SRR4302535.1017275/1‑94 (MQ=60)

                               TGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTG                                                                >  SRR4302535.4111659/1‑94 (MQ=60)

                               TGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTG                                                                >  SRR4302535.4481916/1‑94 (MQ=60)

                                 GCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCC                                                              <  SRR4302535.2722079/94‑1 (MQ=60)

                                  GGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCA                                                             <  SRR4302535.71006/94‑1 (MQ=60)

                                  CGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCA                                                             >  SRR4302535.1325459/1‑94 (MQ=60)

                                   GTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAA                                                            <  SRR4302535.930888/94‑1 (MQ=60)

                                   GTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAA                                                            >  SRR4302535.2327477/1‑94 (MQ=60)

                                     TTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAAT                                                          <  SRR4302535.3536735/94‑1 (MQ=60)

                                     TTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAAT                                                          <  SRR4302535.4497588/94‑1 (MQ=60)

                                      TTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATG                                                         <  SRR4302535.3423431/94‑1 (MQ=60)

                                      TTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATG                                                         <  SRR4302535.1184780/94‑1 (MQ=60)

                                       TCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGG                                                        <  SRR4302535.3748184/94‑1 (MQ=60)

                                       TCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGG                                                        <  SRR4302535.3228701/94‑1 (MQ=60)

                                       TCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGG                                                        <  SRR4302535.3625854/94‑1 (MQ=60)

                                        CGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGC                                                       >  SRR4302535.3640270/1‑94 (MQ=60)

                                        CGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGC                                                       <  SRR4302535.747079/94‑1 (MQ=60)

                                        CGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGC                                                       <  SRR4302535.192926/94‑1 (MQ=60)

                                        CGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGGGCCGAAGAAGCCAGCGCAGGCGGACACGCAGCAATGATCAACTTTGCCAAATGGC                                                       >  SRR4302535.940767/1‑94 (MQ=60)

                                         GTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCG                                                      <  SRR4302535.3651388/94‑1 (MQ=60)

                                         GTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCG                                                      >  SRR4302535.4371128/1‑94 (MQ=60)

                                         GTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCG                                                      <  SRR4302535.3764278/94‑1 (MQ=60)

                                         GTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCG                                                      >  SRR4302535.1373593/1‑94 (MQ=60)

                                         GTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCACACACGCAGCAATGATCAACTTTGCCAAATGGCG                                                      <  SRR4302535.4045783/94‑1 (MQ=60)

                                            CGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAG                                                   <  SRR4302535.2655786/94‑1 (MQ=60)

                                              ATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCC                                                 <  SRR4302535.1027840/94‑1 (MQ=60)

                                                TGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGA                                               >  SRR4302535.3511555/1‑94 (MQ=60)

                                                  AACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAAT                                             >  SRR4302535.3917626/1‑94 (MQ=60)

                                                   ACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGTGCAGCCGAATC                                            <  SRR4302535.1771815/94‑1 (MQ=60)

                                                   ACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATC                                            <  SRR4302535.4041379/94‑1 (MQ=60)

                                                    CAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCACATGGCGCAGCCGAATCG                                           >  SRR4302535.4335594/1‑94 (MQ=60)

                                                    CAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCG                                           >  SRR4302535.4252133/1‑94 (MQ=60)

                                                    CAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCG                                           >  SRR4302535.2685198/1‑94 (MQ=60)

                                                    CAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCG                                           <  SRR4302535.2860947/94‑1 (MQ=60)

                                                    CAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCG                                           <  SRR4302535.1484527/94‑1 (MQ=60)

                                                     AAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGA                                          >  SRR4302535.3849969/1‑94 (MQ=60)

                                                     AAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGA                                          >  SRR4302535.2848358/1‑94 (MQ=60)

                                                      AGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGAC                                         <  SRR4302535.1285563/94‑1 (MQ=60)

                                                      AGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGAC                                         <  SRR4302535.259783/94‑1 (MQ=60)

                                                       GCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACG                                        <  SRR4302535.651273/94‑1 (MQ=60)

                                                         GATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTC                                      >  SRR4302535.4552925/1‑94 (MQ=60)

                                                         GATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTC                                      >  SRR4302535.788065/1‑94 (MQ=60)

                                                         GATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTC                                      >  SRR4302535.3017775/1‑94 (MQ=60)

                                                           TGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCC                                    >  SRR4302535.4321289/1‑94 (MQ=60)

                                                           TGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCC                                    <  SRR4302535.2116533/94‑1 (MQ=60)

                                                           TGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCC                                    <  SRR4302535.506348/94‑1 (MQ=60)

                                                           TGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCA                                    <  SRR4302535.197165/94‑1 (MQ=60)

                                                             CTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGC                                  <  SRR4302535.3207951/94‑1 (MQ=60)

                                                               CGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAG                                <  SRR4302535.1026790/94‑1 (MQ=60)

                                                               CGACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAG                                <  SRR4302535.2442178/94‑1 (MQ=60)

                                                                GACGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATTAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGA                               >  SRR4302535.2443118/1‑94 (MQ=60)

                                                                  CGCGGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAA                             <  SRR4302535.3775076/94‑1 (MQ=60)

                                                                  CGCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAA                             <  SRR4302535.3701858/94‑1 (MQ=60)

                                                                   GCCGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAA                            <  SRR4302535.2643957/94‑1 (MQ=60)

                                                                    CCGGTCTGAGTGCCGAAGAAACCAGCGCAGGCGCACCCGCAGCAATGATCAACTTTGCCAAATGGCACAGCCGAATCGACGTCCCGCAGCAAAC                           <  SRR4302535.3025719/94‑1 (MQ=60)

                                                                     CGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACT                          <  SRR4302535.3316082/94‑1 (MQ=60)

                                                                     CGGGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACT                          <  SRR4302535.3852963/94‑1 (MQ=60)

                                                                       GGCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCA                        <  SRR4302535.4618201/94‑1 (MQ=60)

                                                                        GCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCAC                       <  SRR4302535.1914211/94‑1 (MQ=60)

                                                                        GCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCAC                       <  SRR4302535.3794772/94‑1 (MQ=60)

                                                                        GCTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCAC                       <  SRR4302535.3254983/94‑1 (MQ=60)

                                                                        GCTGAGTGCCGAAGAAGCCACCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCAC                       <  SRR4302535.2111118/94‑1 (MQ=60)

                                                                         CTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACG                      <  SRR4302535.72444/94‑1 (MQ=60)

                                                                         CTGAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGACCCGCAGCAAACTCACA                      >  SRR4302535.3575523/1‑94 (MQ=60)

                                                                           GAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCGGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGAC                    <  SRR4302535.4181997/94‑1 (MQ=60)

                                                                           GAGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGAC                    >  SRR4302535.3596055/1‑94 (MQ=60)

                                                                           GAGTGCCGAAGAACCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGAC                    <  SRR4302535.1081142/94‑1 (MQ=60)

                                                                            AGTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACA                   <  SRR4302535.3376794/94‑1 (MQ=60)

                                                                             GTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACAC                  >  SRR4302535.354963/1‑94 (MQ=60)

                                                                             GTGCCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACAC                  >  SRR4302535.2722107/1‑94 (MQ=60)

                                                                                CCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTT               >  SRR4302535.1183029/1‑94 (MQ=60)

                                                                                CCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTT               <  SRR4302535.1952960/94‑1 (MQ=60)

                                                                                CCGAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTT               <  SRR4302535.3873386/94‑1 (MQ=60)

                                                                                  GAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAA             <  SRR4302535.3249233/94‑1 (MQ=60)

                                                                                  GAAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAA             <  SRR4302535.271633/94‑1 (MQ=60)

                                                                                   AAGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAA            >  SRR4302535.3619535/1‑94 (MQ=60)

                                                                                    AGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAA           >  SRR4302535.3427683/1‑94 (MQ=60)

                                                                                    AGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAA           >  SRR4302535.2921937/1‑94 (MQ=60)

                                                                                    AGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAA           <  SRR4302535.1147335/94‑1 (MQ=60)

                                                                                    AGAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAAGGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAA           <  SRR4302535.1045077/94‑1 (MQ=60)

                                                                                     GAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAAC          >  SRR4302535.522959/1‑94 (MQ=60)

                                                                                     AAAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAAC          <  SRR4302535.4476779/94‑1 (MQ=60)

                                                                                      AAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACA         <  SRR4302535.2129988/94‑1 (MQ=60)

                                                                                      AAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACA         <  SRR4302535.3635748/94‑1 (MQ=60)

                                                                                      AAGCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACA         >  SRR4302535.465002/1‑94 (MQ=60)

                                                                                      AAGCCAGCGCAGGCCCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACA         <  SRR4302535.3742837/94‑1 (MQ=60)

                                                                                        GCCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGC       <  SRR4302535.4503233/94‑1 (MQ=60)

                                                                                         CCAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCT      <  SRR4302535.4003814/94‑1 (MQ=60)

                                                                                          CAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGTCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTG     <  SRR4302535.386624/94‑1 (MQ=60)

                                                                                          CAGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTG     <  SRR4302535.4384061/94‑1 (MQ=60)

                                                                                           AGCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTGG    <  SRR4302535.4338171/94‑1 (MQ=60)

                                                                                            GCGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTGGC   <  SRR4302535.964849/94‑1 (MQ=60)

                                                                                             CGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTGGCG  <  SRR4302535.4529853/94‑1 (MQ=60)

                                                                                             CGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTGGCG  >  SRR4302535.2951755/1‑94 (MQ=60)

GGAACCCGAGATTTATCACGACGTGACGCGCTGGCGTTTTCGTTCGATTGAACAAGCGATGCTCGACGCCGGGCTGAGTGCCGAAGAAGCCAGTGCAGGCGCACACGCAGCAATGATCAACTTTGCCAAATGGCGCAGCCGAATCGACGTCCCGCAGCAAACTCACGACACCTTAAAACAGCTGGCG  >  NC_000913/3994987‑3995173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`