Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,391 |
+C |
coding (474/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,391 | 1 | . | C | 98.6%
| 209.6
/ ‑3.9
| 69 | coding (474/516 nt) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (30/38); total (30/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAGGCCATGCGCTGGAAG‑GC‑TGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008300‑4008458
|
cccGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑ACAAGGCCATGCGCCGGCAg > 2:547012/3‑93 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAgc < 1:2463423/93‑2 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAAGCCATGCGCTGGAAgc > 1:3949962/1‑92 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGCGGTTCAA‑AAGGCCATGAGCTGGAAgcgg > 2:573336/1‑90 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAgcgg < 2:2846331/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAA‑AAAGCCATGCGCTGGAAgcgg > 1:1683766/1‑90 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGCAGCGG‑TGGCG‑‑‑‑a > 2:2584046/1‑93 (MQ=255)
gCGAGCGCGTCAACGTCAGTTCCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑a < 1:3422101/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aa < 1:3182967/93‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAAGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aa > 2:1849334/1‑93 (MQ=255)
gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aag < 1:575495/93‑2 (MQ=255)
gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aag > 2:2756240/1‑92 (MQ=255)
gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aag < 1:3581944/93‑2 (MQ=255)
gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aag < 1:2674900/93‑2 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aaga > 2:2329246/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aaga > 2:2283480/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAAGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aaga > 1:1052050/1‑91 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCG‑‑‑‑aagaaa < 2:2369141/93‑5 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:2592961/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:3254248/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:4432993/93‑1 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 1:3632859/93‑3 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 1:3793677/93‑3 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 1:1240529/1‑90 (MQ=255)
gAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 1:1051163/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCGGTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt > 1:3702178/1‑89 (MQ=255)
aTGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg > 2:1077404/1‑93 (MQ=255)
aTGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 2:229684/93‑1 (MQ=255)
aTGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 2:760103/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:3374702/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:1566229/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:1894017/93‑1 (MQ=255)
ggcgggcgGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:401856/93‑1 (MQ=255)
ggcgggcgGCGTTTCAA‑AAGGCCATGCGCTGGAAG‑CCGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:3408020/93‑1 (MQ=255)
gcgggcggCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg < 1:3117785/93‑1 (MQ=255)
gcgggcggCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg < 2:1467147/93‑1 (MQ=255)
gggcggCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 1:4425676/93‑1 (MQ=255)
gggcggCGTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 1:1119358/93‑1 (MQ=255)
gcggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg > 1:4457103/1‑93 (MQ=255)
cggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga > 1:4576177/1‑93 (MQ=255)
cggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 2:3526130/93‑1 (MQ=255)
ggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:2669860/93‑1 (MQ=255)
ggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:516542/1‑93 (MQ=255)
ggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:4523682/1‑93 (MQ=255)
ggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:4322943/93‑1 (MQ=255)
ggcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:2958163/93‑1 (MQ=255)
gcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgggg > 1:2074904/1‑90 (MQ=255)
gcgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:2058391/1‑93 (MQ=255)
cgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:1382101/93‑1 (MQ=255)
cgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 1:1265185/93‑1 (MQ=255)
cgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 1:2192640/1‑93 (MQ=255)
cgTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 2:4150932/1‑93 (MQ=255)
gTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc < 2:1470272/93‑1 (MQ=255)
gTTTCAA‑AAGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:1671891/1‑93 (MQ=255)
gTTTCAA‑AAGGCCATGCGCAGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:4571105/1‑93 (MQ=255)
caa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:2234580/91‑1 (MQ=255)
caa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 2:3847674/91‑1 (MQ=255)
canaaGNNCATGCGCTGGAAG‑NNGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:4559497/90‑1 (MQ=255)
aa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:1013108/2‑93 (MQ=255)
aa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 1:4466518/2‑93 (MQ=255)
aa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 2:4362651/92‑1 (MQ=255)
aa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 1:2030356/2‑93 (MQ=255)
aa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:2669759/2‑93 (MQ=255)
aa‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 1:2475525/2‑93 (MQ=255)
a‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 1:4590471/1‑93 (MQ=255)
a‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 2:470735/1‑93 (MQ=255)
a‑aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 1:1050044/1‑93 (MQ=255)
aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 2:1078745/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc > 1:3864513/1‑93 (MQ=255)
aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 1:2907437/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 1:4450069/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:3115899/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:4654945/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:4631955/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 2:2559408/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 2:1507239/1‑93 (MQ=255)
ggCCATGCGCTGGAAGCGG‑TGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 2:3964472/93‑1 (MQ=255)
|
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAGGCCATGCGCTGGAAG‑GC‑TGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008300‑4008458
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCG > NC_000913/4008299‑4008461
|
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCGCTAACTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAG < SRR4302535.641192/94‑1 (MQ=60)
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATGCGCTGGAAG‑C > SRR4302535.3976930/1‑94 (MQ=60)
TCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcg < SRR4302535.2481186/94‑3 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAAGCCATGCGCTGGAAGcgg > SRR4302535.1695960/1‑91 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAACGCCATGCGCTGGAAGcggtggc > SRR4302535.4250813/1‑87 (MQ=60)
GGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcg < SRR4302535.485115/94‑9 (MQ=60)
GCGAGCGCGTCAACGTCAGTTCCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AA < SRR4302535.3445904/94‑1 (MQ=60)
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaag < SRR4302535.3204960/94‑12 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga < SRR4302535.2694038/94‑13 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga < SRR4302535.579534/94‑13 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaaga < SRR4302535.3606788/94‑13 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATGCGCTGGAAGcggtggcgaaga > SRR4302535.1059533/1‑82 (MQ=60)
TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaa > SRR4302535.3556017/1‑80 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCCTGCGCTGGAAGcggtgggggagaaac > SRR4302535.4128343/1‑79 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGAAG‑Gggggggggagaaac > SRR4302535.1786769/1‑80 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302535.3044760/94‑17 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302535.1147712/94‑17 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact < SRR4302535.762486/94‑17 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaact > SRR4302535.966024/1‑78 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactg < SRR4302535.4048510/94‑18 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302535.3472692/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302535.2166428/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg > SRR4302535.4344823/1‑76 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302535.1327585/94‑19 (MQ=60)
TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactggg < SRR4302535.3848928/94‑20 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGAAGcggtggcgtagaaactgggg > SRR4302535.1566742/1‑74 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct > SRR4302535.2113793/1‑73 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct < SRR4302535.4037668/94‑22 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGagggggcgaagacactggcga > SRR4302535.2629781/1‑73 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302535.2466397/94‑25 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302535.4352304/94‑25 (MQ=60)
GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaca < SRR4302535.3178487/94‑25 (MQ=60)
GCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacag < SRR4302535.4169011/94‑26 (MQ=60)
CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaactgggctacagc > SRR4302535.4097557/1‑68 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302535.2446853/94‑29 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302535.1356051/94‑29 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg > SRR4302535.3054709/1‑65 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg < SRR4302535.3086875/94‑30 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATACGCTGGAAGcggtggcgaagaaaatgggctacagcctgtgg > SRR4302535.1195847/1‑62 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaactgggctacagcctgaagg > SRR4302535.752788/1‑61 (MQ=60)
CACCTTAACCTGTCTGGAACTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggat < SRR4302535.323955/94‑36 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302535.4496868/1‑58 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302535.2372067/1‑58 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt < SRR4302535.2373920/94‑37 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302535.1022596/1‑58 (MQ=60)
CCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattg < SRR4302535.624054/94‑38 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302535.1939338/94‑39 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt > SRR4302535.664935/1‑56 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302535.4479187/94‑40 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302535.3600699/94‑40 (MQ=60)
TAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtat < SRR4302535.194243/94‑41 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGCGGTTTA‑AAAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtatagcctgaaggattgtatt > SRR4302535.3721523/1‑53 (MQ=59)
AACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagccttaaggattgtatt > SRR4302535.344694/1‑53 (MQ=60)
AACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtatt > SRR4302535.1910445/1‑53 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattg < SRR4302535.4534257/94‑43 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattg < SRR4302535.1148870/94‑43 (MQ=60)
CCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgc < SRR4302535.3527012/94‑44 (MQ=60)
CCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgc < SRR4302535.2364382/94‑44 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302535.3237860/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg > SRR4302535.3966727/1‑50 (MQ=60)
GTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtt < SRR4302535.3125872/94‑47 (MQ=60)
GTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcggt > SRR4302535.125403/1‑48 (MQ=60)
TCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302535.4463369/94‑48 (MQ=60)
TCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302535.2611590/94‑48 (MQ=60)
TGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg < SRR4302535.3819833/94‑50 (MQ=60)
TGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg < SRR4302535.3658036/94‑50 (MQ=60)
TGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg > SRR4302535.1249385/1‑45 (MQ=60)
GGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggt > SRR4302535.3727819/1‑44 (MQ=57)
GAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtg < SRR4302535.1058638/94‑52 (MQ=60)
AAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtga < SRR4302535.1591254/94‑53 (MQ=60)
AAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtga < SRR4302535.4195952/94‑53 (MQ=60)
AGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcgggggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgcg > SRR4302535.3132113/1‑41 (MQ=60)
TGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacgg > SRR4302535.3700461/1‑39 (MQ=60)
GATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacggg < SRR4302535.222542/94‑57 (MQ=56)
GATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacggg < SRR4302535.1613095/94‑57 (MQ=56)
GATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacggg < SRR4302535.3068576/94‑57 (MQ=56)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302535.4497158/3‑94 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302535.2044988/3‑94 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302535.2250476/92‑1 (MQ=18)
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302535.2493380/3‑94 (MQ=18)
A‑AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302535.4621718/1‑94 (MQ=19)
A‑AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302535.1057512/1‑94 (MQ=19)
AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGC > SRR4302535.3891097/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302535.4480591/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302535.4686452/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302535.2927986/94‑1 (MQ=21)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302535.4663384/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302535.3137592/94‑1 (MQ=23)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT > SRR4302535.4137075/1‑94 (MQ=25)
CCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG < SRR4302535.3291791/94‑1 (MQ=28)
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GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCG > NC_000913/4008299‑4008461
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
