Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,013,177	+C	coding (543/999 nt)	ysgA ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,013,177	1	.	C	100.0%	657.9 / NA	207	A181A (GCC→GCG)	ysgA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (126/81); total (126/81)

Only 100 of 214 total aligned reads displayed.

TTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCAC  >  NC_000913/4013092‑4013260

ttAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTa                                                                               >  1:1344908/1‑93 (MQ=255)

ttAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTa                                                                               >  1:522222/1‑93 (MQ=255)

ttAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTa                                                                               >  2:3952996/1‑93 (MQ=255)

  agcagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAg                                                                             <  2:532829/93‑1 (MQ=255)

   gcagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGa                                                                            >  2:3446685/1‑93 (MQ=255)

    cagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGAt                                                                           <  1:2168023/93‑1 (MQ=255)

     agcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATc                                                                          <  2:1767217/93‑1 (MQ=255)

      gcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCg                                                                         >  1:1098375/1‑93 (MQ=255)

       cccGCCGCGCCTGGCGCTCGTTTTCACTCATCTCCTGCGAAATGCTGTAATCCTAACCACCATATAAGCCGAAAATCGGCGCGTTAAGATCgg                                                                        <  2:81653/93‑1 (MQ=255)

       cccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATCCTGTTATCCTGACCGCCATATAAGCCGACAATCGGCGCGTTAAGATCgg                                                                        <  2:4392649/93‑1 (MQ=255)

        ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       >  2:1190703/1‑93 (MQ=255)

        ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       <  1:4465600/93‑1 (MQ=255)

        ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                       <  1:2340042/93‑1 (MQ=255)

         cGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGtt                                                                      <  2:408840/93‑1 (MQ=255)

          gCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTg                                                                     >  1:1931050/1‑93 (MQ=255)

           cAGCGCCTGGCTCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGc                                                                    <  2:2434455/93‑1 (MQ=255)

           cAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGc                                                                    >  1:3670610/1‑93 (MQ=255)

           cAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGc                                                                    <  2:3693651/93‑1 (MQ=255)

            aGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTGCg                                                                   >  1:1957414/1‑93 (MQ=255)

             gcgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGa                                                                  <  1:915510/93‑1 (MQ=255)

             gcgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGa                                                                  >  1:1409417/1‑93 (MQ=255)

              cgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGat                                                                 <  2:2999348/93‑1 (MQ=255)

              cgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGat                                                                 <  1:2042533/93‑1 (MQ=255)

               gcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGata                                                                >  2:2171234/1‑93 (MQ=255)

                 cTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATc                                                              >  1:3177837/1‑93 (MQ=255)

                 cTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGATAAGATCGGTTGCGATATc                                                              <  2:4578830/93‑1 (MQ=255)

                  tGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCa                                                             <  1:451403/93‑1 (MQ=255)

                    gcgcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAAc                                                           <  2:2419385/93‑1 (MQ=255)

                    gcgcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAAc                                                           >  2:3723960/1‑93 (MQ=255)

                     cgcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACa                                                          <  2:4301202/93‑1 (MQ=255)

                      gcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAg                                                         >  1:4249948/1‑93 (MQ=255)

                      gcATAGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACAATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAg                                                         <  2:1293324/93‑1 (MQ=255)

                       cATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAgg                                                        >  2:3182784/1‑93 (MQ=255)

                       cATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAgg                                                        <  1:3601239/93‑1 (MQ=255)

                        aTGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgt                                                       <  2:2986753/93‑1 (MQ=255)

                         tGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgtt                                                      >  2:4638431/1‑93 (MQ=255)

                         tGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgtt                                                      >  2:3470337/1‑93 (MQ=255)

                         tGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgtt                                                      >  2:3745035/1‑93 (MQ=255)

                         tGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgtt                                                      >  2:1272930/1‑93 (MQ=255)

                         tGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgtt                                                      >  1:1241715/1‑93 (MQ=255)

                          ggTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCGTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttg                                                     >  1:2518010/1‑93 (MQ=255)

                          ggTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttg                                                     >  2:1633862/1‑93 (MQ=255)

                           gTTTCAACGCTCTCTTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgt                                                    <  2:2492925/93‑1 (MQ=255)

                           gTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgt                                                    >  2:2244771/1‑93 (MQ=255)

                            tttCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgtt                                                   <  2:1488236/93‑1 (MQ=255)

                              tCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGGCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTc                                                 >  2:3871145/1‑93 (MQ=255)

                               cAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCg                                                <  1:3142308/93‑1 (MQ=255)

                                aaCGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCgg                                               <  2:109408/93‑1 (MQ=255)

                                 aCGCTCTCCTGCGGAATGCTGTTATCCTTACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                              <  2:1457894/93‑1 (MQ=255)

                                 aCGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                              >  2:3975911/1‑93 (MQ=255)

                                 aCGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                              <  1:4653212/93‑1 (MQ=255)

                                 aCGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                              <  1:4187288/93‑1 (MQ=255)

                                  cGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTg                                             >  2:3050064/1‑93 (MQ=255)

                                   gCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGa                                            >  2:656894/1‑93 (MQ=255)

                                    ctctCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGaa                                           <  2:325714/93‑1 (MQ=255)

                                     tctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAt                                          <  2:3527599/93‑1 (MQ=255)

                                     tctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAt                                          >  2:3355145/1‑93 (MQ=255)

                                     tctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAt                                          >  2:3302497/1‑93 (MQ=255)

                                     tctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAt                                          >  2:3875408/1‑93 (MQ=255)

                                     tctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAt                                          >  1:3883660/1‑93 (MQ=255)

                                      ctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAtt                                         >  2:191067/1‑93 (MQ=255)

                                       tcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTc                                        >  2:4010750/1‑93 (MQ=255)

                                         cTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAg                                      >  2:4041308/1‑93 (MQ=255)

                                         cTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAg                                      >  2:3477862/1‑93 (MQ=255)

                                          tGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGc                                     <  1:4237597/93‑1 (MQ=255)

                                          tGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGc                                     >  1:608578/1‑93 (MQ=255)

                                          tGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGc                                     <  2:1142030/93‑1 (MQ=255)

                                           gCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCg                                    <  1:1200347/93‑1 (MQ=255)

                                             ggAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAc                                  >  1:3715013/1‑93 (MQ=255)

                                             ggAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAc                                  <  2:3635583/93‑1 (MQ=255)

                                              gAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACt                                 <  2:1805334/93‑1 (MQ=255)

                                               aaTGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCATTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACtt                                >  1:3305061/1‑93 (MQ=255)

                                                 tGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGt                              >  2:4428588/1‑93 (MQ=255)

                                                 tGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGt                              >  1:2200997/1‑93 (MQ=255)

                                                 tGCTGTTATCC‑GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTc                             >  2:1662745/1‑93 (MQ=255)

                                                    tGTTATCCTGACCACCATATAAGCTGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGc                           >  1:3584917/1‑93 (MQ=255)

                                                    tGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGc                           >  1:441940/1‑93 (MQ=255)

                                                    tGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGc                           >  2:726562/1‑93 (MQ=255)

                                                      ttATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGccc                         <  1:1565197/93‑1 (MQ=255)

                                                      ttATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGccc                         >  1:1134583/1‑93 (MQ=255)

                                                         tCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTc                      >  1:2289350/1‑93 (MQ=255)

                                                          ccTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCa                     <  1:1006666/93‑1 (MQ=255)

                                                            tGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGt                   <  1:679397/93‑1 (MQ=255)

                                                              accaccATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGttt                 <  1:4264399/93‑1 (MQ=255)

                                                               ccaccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTg                >  1:797027/1‑93 (MQ=255)

                                                                 accaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGcc              >  2:1958166/1‑93 (MQ=255)

                                                                 accaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGcc              >  2:1742137/1‑93 (MQ=255)

                                                                  ccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCg             <  2:904356/93‑1 (MQ=255)

                                                                  acaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCg             >  1:4308021/2‑93 (MQ=255)

                                                                   caTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGt            >  2:4423992/1‑93 (MQ=255)

                                                                    atatAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCCGTTTGCCGTa           >  2:3012294/1‑93 (MQ=255)

                                                                    atatAAGACGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTa           >  2:2573695/1‑93 (MQ=255)

                                                                     tataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAc          >  1:2977731/1‑93 (MQ=255)

                                                                      ataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAcc         >  2:2805905/1‑93 (MQ=255)

                                                                          gCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGc     >  2:2069095/1‑93 (MQ=255)

                                                                           ccGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGcc    >  1:175966/1‑93 (MQ=255)

                                                                            cGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCa   <  1:3840328/93‑1 (MQ=255)

                                                                            cGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCa   >  1:1688526/1‑93 (MQ=255)

                                                                             gagaATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCAc  >  2:2278660/1‑93 (MQ=255)

                                                                             gagaATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGGTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCAc  >  1:2442701/1‑93 (MQ=255)

TTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCAC  >  NC_000913/4013092‑4013260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A