Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,013,717	+G	coding (3/999 nt)	ysgA ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,013,717	1	.	G	100.0%	655.6 / NA	210	M1M (ATG→ATC) †	ysgA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (114/96); total (114/96)

Only 100 of 224 total aligned reads displayed.

TAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CCTTATAAAAATGTTGCGCAATGTTAACTATA  >  NC_000913/4013625‑4013802

tAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGc                                                                                          >  2:249992/1‑93 (MQ=255)

tAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGc                                                                                          >  1:2768409/1‑93 (MQ=255)

  aGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcga                                                                                        >  1:1917234/1‑91 (MQ=255)

    cAGGCATGTTATCCCCTTGTAAAGGAATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGcgatg                                                                                      <  2:455371/93‑5 (MQ=255)

      ggCATGTTCTCCCCTTGTAAGGGAATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgca                                                                                    <  2:4173412/93‑1 (MQ=255)

      ggCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgca                                                                                    >  1:494722/1‑93 (MQ=255)

         aTGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgcagca                                                                                 >  2:3006244/1‑93 (MQ=255)

         aTGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATgcagca                                                                                 >  1:1390925/1‑93 (MQ=255)

          tGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGcagcag                                                                                >  1:3009191/1‑93 (MQ=255)

           gTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAgg                                                                               >  2:1373656/1‑93 (MQ=255)

            ttATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAggg                                                                              >  2:4094391/1‑92 (MQ=255)

            ttATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAggg                                                                              >  2:4636061/1‑92 (MQ=255)

            ttACCCCCTGGTGAAGGGAGAGAGGTGACCCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGt                                                                              <  2:3330592/93‑1 (MQ=255)

             tgcccctTTGCGAAGGGATGGAGGGAACCCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTg                                                                             <  1:94083/90‑1 (MQ=255)

              aTCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGc                                                                            >  1:3046840/1‑93 (MQ=255)

               tCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCa                                                                           >  1:2404813/1‑93 (MQ=255)

                  ctttGTGGTGGAATAGAGGAGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAAt                                                                        <  2:2707098/91‑1 (MQ=255)

                  ccTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAAt                                                                        >  1:3447761/1‑93 (MQ=255)

                   cTTGTGAGGGGAGAGGGTTGAACCCCGCCACAATCGCTTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATc                                                                       <  2:3494346/93‑1 (MQ=255)

                    ttGTGAGGGGATAGAGGTAACCCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATcc                                                                      <  2:3458822/93‑1 (MQ=255)

                    ttGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATcc                                                                      >  2:3564301/1‑93 (MQ=255)

                    ttGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATcc                                                                      >  2:2813906/1‑93 (MQ=255)

                    ttGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATca                                                                      >  1:1701557/1‑92 (MQ=255)

                       tgAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGa                                                                   >  2:2649986/1‑93 (MQ=255)

                        gAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAt                                                                  >  1:725924/1‑93 (MQ=255)

                         aggggATAGAGGTGAGCCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAtt                                                                 <  2:1670759/91‑1 (MQ=255)

                            ggAGAGAGGGAAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttgtt                                                              <  2:1517774/93‑1 (MQ=255)

                             gATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAttggtg                                                             >  2:16447/1‑93 (MQ=255)

                              aaagagGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgt                                                            <  2:4043848/91‑1 (MQ=255)

                              aTAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgt                                                            >  1:3473310/1‑93 (MQ=255)

                              aTAGAGGTAAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgt                                                            <  2:2221362/93‑1 (MQ=255)

                               tAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgtg                                                           >  2:2448643/1‑93 (MQ=255)

                               tAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgtg                                                           >  1:3281040/1‑93 (MQ=255)

                                  agGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATtgttgtgttg                                                        >  2:327516/1‑93 (MQ=255)

                                   ggTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTgttgtgttgt                                                       >  2:4224484/1‑93 (MQ=255)

                                    gTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTgttgtt                                                      >  2:1046917/1‑93 (MQ=255)

                                     tGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGttgttg                                                     >  1:3706854/1‑93 (MQ=255)

                                      gAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGc                                                    >  1:2197778/1‑93 (MQ=255)

                                       acgCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGcc                                                   <  1:4538419/91‑1 (MQ=255)

                                       aaccccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGcc                                                   <  1:1635695/90‑1 (MQ=255)

                                        accccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCa                                                  <  2:2841678/91‑1 (MQ=255)

                                        aGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCa                                                  <  1:1437737/93‑1 (MQ=255)

                                          cccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATg                                                <  2:1816476/93‑1 (MQ=255)

                                           ccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATgg                                               >  2:1690252/1‑93 (MQ=255)

                                           ccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATgg                                               >  1:3185847/1‑93 (MQ=255)

                                           ccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATgg                                               <  1:1050799/93‑1 (MQ=255)

                                           ccGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGAGGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATgg                                               >  1:1207361/1‑93 (MQ=255)

                                            cGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGt                                              <  2:2104569/93‑1 (MQ=255)

                                             gCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTa                                             <  2:2599255/93‑1 (MQ=255)

                                              ccACAATCGCGTCGTCCGGGGTCTGAACTATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAt                                            <  1:2104986/93‑1 (MQ=255)

                                              ccACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAt                                            <  1:2877458/93‑1 (MQ=255)

                                              ccACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAt                                            <  1:2753051/93‑1 (MQ=255)

                                              ccACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAt                                            <  2:3693307/93‑1 (MQ=255)

                                               cacaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGCTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAtt                                           >  1:2123766/1‑93 (MQ=255)

                                               cacaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAtt                                           >  2:2330419/1‑93 (MQ=255)

                                               cacaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAtt                                           >  2:852036/1‑93 (MQ=255)

                                               cacaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAtt                                           >  1:562400/1‑93 (MQ=255)

                                               cacaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGATGTGTTGTTGCCATGGTAtt                                           >  1:1092155/1‑93 (MQ=255)

                                                acaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtc                                          >  2:203264/1‑93 (MQ=255)

                                                acaATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtc                                          <  1:1677324/93‑1 (MQ=255)

                                                 caATCGCGTCGTCCGTGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtct                                         >  1:4445129/1‑93 (MQ=255)

                                                 caATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtct                                         >  1:680303/1‑93 (MQ=255)

                                                 caATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtct                                         >  2:3241450/1‑93 (MQ=255)

                                                  aaTCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtctc                                        >  1:3092165/1‑93 (MQ=255)

                                                   aTCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATtctcg                                       >  1:763760/1‑92 (MQ=255)

                                                    tCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCg                                      >  2:393093/1‑93 (MQ=255)

                                                    tCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCg                                      <  2:4057094/93‑1 (MQ=255)

                                                    tCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCg                                      <  2:215304/93‑1 (MQ=255)

                                                      gcgTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑a                                   <  2:535118/93‑1 (MQ=255)

                                                      gcgTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑a                                   <  1:4184691/93‑1 (MQ=255)

                                                        gtcgtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑cc                                <  2:3175352/93‑1 (MQ=255)

                                                           gtcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑ccctt                             <  2:3140719/93‑4 (MQ=255)

                                                            tcCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑ccctta                            <  2:1111405/93‑5 (MQ=255)

                                                              cGGGGTGTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGGCATGGTATTCTCCGT‑ACCCTtata                           <  2:3809031/93‑1 (MQ=255)

                                                               ggggTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATaa                          <  2:4496355/93‑1 (MQ=255)

                                                               ggggTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATaa                          >  1:2226153/1‑93 (MQ=255)

                                                                  gTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATaaaaa                       <  1:1416973/93‑1 (MQ=255)

                                                                  gTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATaaaaa                       >  2:1210606/1‑93 (MQ=255)

                                                                   tCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAAt                      <  1:3509696/93‑1 (MQ=255)

                                                                     ttaaCGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGt                    >  2:1854725/3‑93 (MQ=255)

                                                                       aaCGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTg                  >  1:2063897/1‑93 (MQ=255)

                                                                        aCGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTgc                 <  2:620666/93‑1 (MQ=255)

                                                                         cGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTACGT‑ACCCTTATAAAAATGTTgcg                >  2:3518172/1‑93 (MQ=255)

                                                                          gATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTgcgc               <  1:3809267/93‑1 (MQ=255)

                                                                           aTGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCa              >  1:4064847/1‑93 (MQ=255)

                                                                            tGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCaa             >  1:4376157/1‑93 (MQ=255)

                                                                             ggTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAAt            <  1:1559528/93‑1 (MQ=255)

                                                                             ggTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAAt            >  1:3330359/1‑93 (MQ=255)

                                                                             ggTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAAt            <  2:1134173/93‑1 (MQ=255)

                                                                              gTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATg           >  1:1731977/1‑93 (MQ=255)

                                                                               tCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGt          <  1:4242623/93‑1 (MQ=255)

                                                                                cGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTGC‑CCTTATAAAAATGTTGCGCAATGtt         <  2:3668164/93‑1 (MQ=255)

                                                                                 gAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTa        <  1:1247831/93‑1 (MQ=255)

                                                                                    gCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTAACt     <  1:125319/93‑1 (MQ=255)

                                                                                      gagaGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTAAGtat   >  2:1736500/1‑93 (MQ=255)

                                                                                      gagaGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTAACtat   >  1:2970015/1‑93 (MQ=255)

                                                                                      gagaGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTAACtat   <  1:3960258/93‑1 (MQ=255)

                                                                                       agagGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTAACtata  <  2:3783784/93‑1 (MQ=255)

                                                                                       agagGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTAACtata  >  1:2593744/1‑93 (MQ=255)

                                                                                       agagGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑ACCCTTATAAAAATGTTGCGCAATGTTAACtata  >  1:4653232/1‑93 (MQ=255)

TAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGT‑A‑CCTTATAAAAATGTTGCGCAATGTTAACTATA  >  NC_000913/4013625‑4013802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTA‑CCTTATAAAAATGTTGCGCAATGTTAACTATAGTCA  >  NC_000913/4013624‑4013806

GTAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGC                                                                                             >  SRR4302535.2788119/1‑94 (MQ=60)

  AAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCga                                                                                           >  SRR4302535.1931048/1‑92 (MQ=60)

   AGCAGGCATTTTATCCCTTTGGAAAGGGATAGAGGGGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCgat                                                                                          <  SRR4302535.1097587/94‑4 (MQ=60)

   AGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCgat                                                                                          >  SRR4302535.2188774/1‑91 (MQ=60)

   AGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCgat                                                                                          >  SRR4302535.2214308/1‑91 (MQ=60)

     CAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGGCTGAACGATGGTCGAAGCGAGAGGCGATGC                                                                                        >  SRR4302535.1325596/1‑94 (MQ=60)

      AGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCA                                                                                       >  SRR4302535.4135033/1‑94 (MQ=60)

      AGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCA                                                                                       >  SRR4302535.498192/1‑94 (MQ=60)

      AGGCATGTTACCCCGTGGTGAGGGAATAGAGGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCA                                                                                       <  SRR4302535.979413/94‑1 (MQ=60)

       GGCATGTTACCCCTTTGTGAGGGAATAGAGGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAG                                                                                      <  SRR4302535.1773052/94‑1 (MQ=60)

         CATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCA                                                                                    >  SRR4302535.1400852/1‑94 (MQ=60)

         CATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCA                                                                                    >  SRR4302535.364486/1‑94 (MQ=60)

          ATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAG                                                                                   >  SRR4302535.2612940/1‑94 (MQ=60)

          ATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAG                                                                                   >  SRR4302535.3030268/1‑94 (MQ=60)

          ATGTTACCCCCTGGTGAAGGGAAAGAGGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAG                                                                                   <  SRR4302535.1701984/94‑1 (MQ=60)

           TGTTACCCCCTTGAGAAGGGATAGAGGTAAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGG                                                                                  <  SRR4302535.2898450/94‑1 (MQ=60)

             TTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTG                                                                                >  SRR4302535.1628467/1‑94 (MQ=60)

             TTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTG                                                                                >  SRR4302535.518767/1‑94 (MQ=60)

             TTACCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTG                                                                                <  SRR4302535.4454291/94‑1 (MQ=60)

              tgcccctttgcgaagggatggagggaaccCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGC                                                                               <  SRR4302535.94751/65‑1 (MQ=60)

              TATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGC                                                                               >  SRR4302535.3068184/1‑94 (MQ=60)

               ATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCA                                                                              >  SRR4302535.2422117/1‑94 (MQ=60)

               ATCCCCTGGTGAAGGGATAGAGGTAAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCA                                                                              <  SRR4302535.3137209/94‑1 (MQ=60)

                TCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGCGGCGATGCAGCAGGTTCAA                                                                             >  SRR4302535.2045599/1‑94 (MQ=60)

                TCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAA                                                                             >  SRR4302535.662352/1‑94 (MQ=60)

                  cgctggtggaggatcagagccgacgccgGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAAT                                                                           <  SRR4302535.2606349/66‑1 (MQ=60)

                  CCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAAT                                                                           >  SRR4302535.128391/1‑94 (MQ=60)

                  CCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAAT                                                                           >  SRR4302535.3471732/1‑94 (MQ=60)

                    CTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCA                                                                         >  SRR4302535.1713855/1‑94 (MQ=60)

                      TGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAG                                                                       <  SRR4302535.1540919/94‑1 (MQ=60)

                        TGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAT                                                                     >  SRR4302535.731020/1‑94 (MQ=60)

                        GGAAGGGATAGAGGGGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGAT                                                                     <  SRR4302535.969687/94‑1 (MQ=60)

                         GAAGGGATAGGGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATT                                                                    <  SRR4302535.705648/94‑1 (MQ=60)

                           AGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGT                                                                  >  SRR4302535.3504372/1‑94 (MQ=60)

                             gcatcacggagaccCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTG                                                                <  SRR4302535.1777706/80‑1 (MQ=60)

                             gaaaaggggagaacCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTG                                                                <  SRR4302535.2416860/80‑1 (MQ=60)

                              GATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGT                                                               >  SRR4302535.3497444/1‑94 (MQ=60)

                              GATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGT                                                               >  SRR4302535.2079477/1‑94 (MQ=60)

                              GAGAGGGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGT                                                               <  SRR4302535.1063828/94‑1 (MQ=60)

                               ATAGGGGGGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTG                                                              <  SRR4302535.122220/94‑1 (MQ=60)

                               ATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTG                                                              >  SRR4302535.3030618/1‑94 (MQ=60)

                               ATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTG                                                              >  SRR4302535.3303829/1‑94 (MQ=60)

                               ATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTG                                                              <  SRR4302535.1926920/94‑1 (MQ=60)

                               ATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTG                                                              >  SRR4302535.1111246/1‑94 (MQ=60)

                                TAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGT                                                             >  SRR4302535.3020794/1‑94 (MQ=60)

                                 GGAGGTGAACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTT                                                            <  SRR4302535.4009861/94‑1 (MQ=60)

                                 AGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTT                                                            >  SRR4302535.3256613/1‑94 (MQ=60)

                                  ggggaGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTG                                                           <  SRR4302535.4060462/89‑1 (MQ=60)

                                  GAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGGGCAAATCCAGATTGTTGTGTTG                                                           >  SRR4302535.21956/1‑94 (MQ=60)

                                  GAGGGAAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTG                                                           <  SRR4302535.4371814/94‑1 (MQ=60)

                                     GTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTG                                                        >  SRR4302535.4512717/1‑94 (MQ=60)

                                     GTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTG                                                        >  SRR4302535.3732520/1‑94 (MQ=60)

                                      TGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGC                                                       >  SRR4302535.4169082/1‑94 (MQ=60)

                                      TGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGC                                                       >  SRR4302535.2213439/1‑94 (MQ=60)

                                        ACGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCA                                                     <  SRR4302535.4569465/94‑1 (MQ=60)

                                        AAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCA                                                     >  SRR4302535.954528/1‑94 (MQ=60)

                                        AACCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCA                                                     <  SRR4302535.1647515/94‑1 (MQ=60)

                                         AGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCAT                                                    <  SRR4302535.1448015/94‑1 (MQ=60)

                                           CCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGG                                                  >  SRR4302535.3207872/1‑94 (MQ=60)

                                           CCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGAGGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGG                                                  >  SRR4302535.1216040/1‑94 (MQ=60)

                                            CCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGT                                                 <  SRR4302535.1058271/94‑1 (MQ=60)

                                             CGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTA                                                >  SRR4302535.1361123/1‑94 (MQ=60)

                                             CGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTA                                                >  SRR4302535.2443123/1‑94 (MQ=60)

                                              GCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTAT                                               >  SRR4302535.3847265/1‑94 (MQ=60)

                                               CCACAATCGCGTCGTCCGGGGTCTGAACTATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATT                                              <  SRR4302535.2120169/94‑1 (MQ=60)

                                               CCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGCTGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATT                                              >  SRR4302535.2139073/1‑94 (MQ=60)

                                               CCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATT                                              <  SRR4302535.2897835/94‑1 (MQ=60)

                                               CCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATT                                              >  SRR4302535.2139072/1‑94 (MQ=60)

                                               CCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATT                                              >  SRR4302535.566332/1‑94 (MQ=60)

                                               CCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATT                                              <  SRR4302535.2772670/94‑1 (MQ=60)

                                               CCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGATGTGTTGTTGCCATGGTATT                                              >  SRR4302535.1099935/1‑94 (MQ=60)

                                                CACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTC                                             >  SRR4302535.924345/1‑94 (MQ=60)

                                                CACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTC                                             >  SRR4302535.276098/1‑94 (MQ=60)

                                                 ACAATCGCGTCGTCCGTGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCT                                            >  SRR4302535.4475611/1‑94 (MQ=60)

                                                 ACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCT                                            >  SRR4302535.685069/1‑94 (MQ=60)

                                                 ACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCT                                            <  SRR4302535.1689470/94‑1 (MQ=60)

                                                  CAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTC                                           >  SRR4302535.3113699/1‑94 (MQ=60)

                                                   AATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCG                                          >  SRR4302535.769140/1‑94 (MQ=60)

                                                   AATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCC                                          >  SRR4302535.1602595/1‑94 (MQ=60)

                                                      CGCGTCGTCCGGGGTCTGAACGATGGTTGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTC                                       >  SRR4302535.3309687/1‑94 (MQ=60)

                                                       GCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTA‑C                                     <  SRR4302535.4213321/94‑1 (MQ=60)

                                                        CGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTA‑CC                                    <  SRR4302535.4330934/94‑1 (MQ=60)

                                                             TCCGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTAT                                >  SRR4302535.2424636/1‑94 (MQ=60)

                                                             ACCGGAGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTtcccttat                                <  SRR4302535.4086561/94‑9 (MQ=60)

                                                               CGGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAA                              >  SRR4302535.2241990/1‑94 (MQ=60)

                                                                GGGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAA                             <  SRR4302535.3413677/94‑1 (MQ=60)

                                                                 GGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAA                            <  SRR4302535.750698/94‑1 (MQ=60)

                                                                 GGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAA                            <  SRR4302535.1426136/94‑1 (MQ=60)

                                                                 GGGTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAA                            >  SRR4302535.334238/1‑94 (MQ=60)

                                                                   GTCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAAT                          <  SRR4302535.1427089/94‑1 (MQ=60)

                                                                    TCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATG                         <  SRR4302535.3534085/94‑1 (MQ=60)

                                                                    TCTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATG                         <  SRR4302535.4225449/94‑1 (MQ=60)

                                                                     CTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGT                        >  SRR4302535.3768806/1‑94 (MQ=60)

                                                                     CTGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCAGGGTATTCTCCGTACCCTTATAAAAATGT                        >  SRR4302535.1684674/1‑94 (MQ=60)

                                                                      TGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTT                       <  SRR4302535.4538012/94‑1 (MQ=60)

                                                                      TGAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTT                       <  SRR4302535.1733779/94‑1 (MQ=60)

                                                                       GAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTG                      <  SRR4302535.2775475/94‑1 (MQ=60)

                                                                       GAACGATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTG                      >  SRR4302535.2078776/1‑94 (MQ=60)

                                                                           GATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCA                  >  SRR4302535.4092662/1‑94 (MQ=60)

                                                                           GATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCA                  <  SRR4302535.3835546/94‑1 (MQ=60)

                                                                            ATGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAA                 >  SRR4302535.4406098/1‑94 (MQ=60)

                                                                             TGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAAT                >  SRR4302535.35544/1‑94 (MQ=60)

                                                                             TGGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAAT                >  SRR4302535.3353539/1‑94 (MQ=60)

                                                                              GGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATG               <  SRR4302535.1570770/94‑1 (MQ=60)

                                                                              GGTCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATG               >  SRR4302535.1744497/1‑94 (MQ=60)

                                                                                TCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTT             <  SRR4302535.4271662/94‑1 (MQ=60)

                                                                                TCGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTT             <  SRR4302535.4687376/94‑1 (MQ=60)

                                                                                 CGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTA            >  SRR4302535.3013645/1‑94 (MQ=60)

                                                                                 CGAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTA            >  SRR4302535.2861584/1‑94 (MQ=60)

                                                                                  GAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAA           <  SRR4302535.2295964/94‑1 (MQ=60)

                                                                                  GAAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAA           <  SRR4302535.1256732/94‑1 (MQ=60)

                                                                                   AAGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAAC          <  SRR4302535.1428115/94‑1 (MQ=60)

                                                                                    AGCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACT         >  SRR4302535.4632524/1‑94 (MQ=60)

                                                                                     GCGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTA        <  SRR4302535.126199/94‑1 (MQ=60)

                                                                                      CGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTAT       <  SRR4302535.599325/94‑1 (MQ=60)

                                                                                      CGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTAT       <  SRR4302535.3080304/94‑1 (MQ=60)

                                                                                      CGAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTAT       >  SRR4302535.2990862/1‑94 (MQ=60)

                                                                                       GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATA      >  SRR4302535.2612376/1‑94 (MQ=60)

                                                                                       GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATA      <  SRR4302535.3987302/94‑1 (MQ=60)

                                                                                       GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATA      <  SRR4302535.1261753/94‑1 (MQ=60)

                                                                                       GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATA      >  SRR4302535.4684736/1‑94 (MQ=60)

                                                                                       GAGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATA      <  SRR4302535.3489082/94‑1 (MQ=60)

                                                                                        AGAGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAG     >  SRR4302535.259443/1‑94 (MQ=60)

                                                                                          AGGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAGTC   >  SRR4302535.730196/1‑94 (MQ=60)

                                                                                           GGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAGTCA  <  SRR4302535.1673703/94‑1 (MQ=60)

                                                                                           GGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAGTCA  >  SRR4302535.675612/1‑94 (MQ=60)

                                                                                           GGCGATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTACCCTTATAAAAATGTTGCGCAATGTTAACTATAGTCA  <  SRR4302535.2142145/94‑1 (MQ=60)

GTAAGCAGGCATGTTATCCCCTTGTGAAGGGATAGAGGTGAAGCCCGCCACAATCGCGTCGTCCGGGGTCTGAACGATGGTCGAAGCGAGAGGC‑ATGCAGCAGGTGCAAATCCAGATTGTTGTGTTGTTGCCATGGTATTCTCCGTA‑CCTTATAAAAATGTTGCGCAATGTTAACTATAGTCA  >  NC_000913/4013624‑4013806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`