Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,016,743	C→T	P101L (CCC→CTC)	ubiE →	UbiE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,016,743	0	C	T	100.0%	897.5 / NA	246	P101L (CCC→CTC)	ubiE	UbiE
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (117/129); total (117/129)

Only 100 of 251 total aligned reads displayed.

CTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGG  >  NC_000913/4016653‑4016832

 tggtggCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCaa                                                                                        <  1:201084/93‑1 (MQ=255)

    gggCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAAt                                                                                     <  2:3425742/92‑1 (MQ=255)

      gCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATgg                                                                                   >  2:1689620/1‑93 (MQ=255)

       cACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATggg                                                                                  <  1:18403/93‑1 (MQ=255)

        cccGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGc                                                                                 <  2:874309/92‑1 (MQ=255)

        aCCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGc                                                                                 <  2:1579776/93‑1 (MQ=255)

             cGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCga                                                                            <  1:445731/93‑1 (MQ=255)

              gACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAGATGGGCCGCgag                                                                           >  2:1075457/1‑93 (MQ=255)

               aCCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCgaga                                                                          <  1:3583337/93‑1 (MQ=255)

                ccTGACAGCGAAAGTCTCCCGCCTGATCGGAGAAACGCGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGaa                                                                         <  1:2047641/93‑1 (MQ=255)

                 cTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAg                                                                        >  1:3098563/1‑93 (MQ=255)

                 cTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGACGCGAGAAg                                                                        >  2:1287739/1‑93 (MQ=255)

                  tGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGc                                                                       >  2:2536069/1‑93 (MQ=255)

                  tGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGc                                                                       >  1:2940921/1‑93 (MQ=255)

                   gACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCt                                                                      <  1:3516240/93‑1 (MQ=255)

                   gACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCt                                                                      <  2:164993/93‑1 (MQ=255)

                    aCAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTg                                                                     <  1:3040917/93‑1 (MQ=255)

                     cAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGc                                                                    <  2:1103696/93‑1 (MQ=255)

                      aGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCg                                                                   >  2:312522/1‑93 (MQ=255)

                       gCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGt                                                                  >  1:1495719/1‑93 (MQ=255)

                        cGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTa                                                                 >  1:4282321/1‑93 (MQ=255)

                         gAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTaa                                                                <  1:4581167/93‑1 (MQ=255)

                         gAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTaa                                                                <  1:3221955/93‑1 (MQ=255)

                          aaaTTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAat                                                               <  2:2321811/93‑1 (MQ=255)

                          aaaTTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAat                                                               >  1:647083/1‑93 (MQ=255)

                          aaaTTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAat                                                               <  1:4084432/93‑1 (MQ=255)

                           aaTTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAata                                                              <  2:1394215/93‑1 (MQ=255)

                           aaTTCTCCCGCCTGGTCAGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAata                                                              <  2:1891544/93‑1 (MQ=255)

                            aTTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAatat                                                             <  2:2923441/93‑1 (MQ=255)

                            aTTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAatat                                                             <  1:3115245/93‑1 (MQ=255)

                             ttCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATc                                                            >  2:4459436/1‑93 (MQ=255)

                             ttCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATc                                                            <  2:82768/93‑1 (MQ=255)

                             atctcCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATc                                                            <  2:2573856/92‑1 (MQ=255)

                              tctcCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCg                                                           >  1:483925/1‑93 (MQ=255)

                               ctcCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCgg                                                          >  2:3361417/1‑93 (MQ=255)

                                  ccGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGgtgt                                                       >  2:1433779/1‑93 (MQ=255)

                                    gCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGa                                                     <  2:1985335/93‑1 (MQ=255)

                                    gCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGa                                                     <  1:1223755/93‑1 (MQ=255)

                                     ccTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGAt                                                    <  2:2159680/93‑1 (MQ=255)

                                     ccTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGAt                                                    <  1:751637/93‑1 (MQ=255)

                                     ccTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGAt                                                    <  1:2860750/93‑1 (MQ=255)

                                      cTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGTGCCGCGAGAAGCTGCGTAATATCGGTGTGAtt                                                   >  2:2219864/1‑93 (MQ=255)

                                      cTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGAtt                                                   <  2:2483755/93‑1 (MQ=255)

                                      cTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGAtt                                                   >  1:406346/1‑93 (MQ=255)

                                       tGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTg                                                  <  1:2754951/93‑1 (MQ=255)

                                       tGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTg                                                  <  1:730251/93‑1 (MQ=255)

                                       tGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTg                                                  <  1:3183935/93‑1 (MQ=255)

                                         gTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGc                                                <  1:1017898/93‑1 (MQ=255)

                                         gTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGc                                                <  1:2672721/93‑1 (MQ=255)

                                              agaAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGt                                           >  1:3738816/1‑93 (MQ=255)

                                              agaAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGt                                           <  2:1491955/93‑1 (MQ=255)

                                               gaAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGtt                                          >  2:3279762/1‑93 (MQ=255)

                                               gaAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGtt                                          <  2:791008/93‑1 (MQ=255)

                                                aaaCTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTg                                         >  2:4274200/1‑93 (MQ=255)

                                                  aCTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAg                                       >  2:2075958/1‑93 (MQ=255)

                                                  aCTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAg                                       <  2:2402435/93‑1 (MQ=255)

                                                   cTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGt                                      <  1:2336114/93‑1 (MQ=255)

                                                    tGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGtg                                     >  2:2561772/1‑92 (MQ=255)

                                                    tGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGtg                                     <  1:2820888/93‑2 (MQ=255)

                                                       cAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAgtgtgt                                  <  1:4488497/93‑1 (MQ=255)

                                                        aaaGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGtt                                 <  1:1004855/93‑1 (MQ=255)

                                                        aaaGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGtt                                 >  2:2777296/1‑93 (MQ=255)

                                                         aaGTGGTCATTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTc                                >  2:538679/1‑93 (MQ=255)

                                                          aGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCa                               <  1:1655232/93‑1 (MQ=255)

                                                          aGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCa                               >  2:2038747/1‑93 (MQ=255)

                                                           gTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAg                              <  1:3500754/93‑1 (MQ=255)

                                                           gTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAg                              >  1:882540/1‑93 (MQ=255)

                                                            tGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAgg                             <  2:2119557/93‑1 (MQ=255)

                                                            tGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAgg                             >  2:3758920/1‑93 (MQ=255)

                                                            tGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAgg                             >  1:996496/1‑93 (MQ=255)

                                                               tCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGa                          >  1:3436186/1‑93 (MQ=255)

                                                                 cTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGCAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTACAGGCGTAc                        >  2:1229065/1‑93 (MQ=255)

                                                                 cTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAc                        >  2:4305151/1‑93 (MQ=255)

                                                                 cTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAc                        >  1:4563788/1‑93 (MQ=255)

                                                                 cTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAc                        >  2:1255819/1‑93 (MQ=255)

                                                                     cTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTg                    <  2:4124019/93‑1 (MQ=255)

                                                                     cTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTg                    >  1:1763085/1‑93 (MQ=255)

                                                                      tGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGa                   <  2:3944953/93‑1 (MQ=255)

                                                                      tGATATCAATGAATCCATGATCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGa                   >  2:4572834/1‑93 (MQ=255)

                                                                       gATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAg                  >  2:962950/1‑93 (MQ=255)

                                                                        atatCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAgg                 <  2:2895106/93‑1 (MQ=255)

                                                                        atatCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAgg                 >  1:1386287/1‑93 (MQ=255)

                                                                         tatCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGgc                <  2:159283/93‑1 (MQ=255)

                                                                           tCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGgcgc              <  1:3773295/93‑1 (MQ=255)

                                                                           tCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAACATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGgcgc              >  2:3926857/1‑93 (MQ=255)

                                                                             aaTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCta            >  1:1799578/1‑92 (MQ=255)

                                                                             aaTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGGTGAGGGTGTTCAGGCGAACGCTGAGGCGCta            >  2:51854/1‑92 (MQ=255)

                                                                              aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac           <  1:4192233/93‑3 (MQ=255)

                                                                              aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac           <  2:358095/93‑3 (MQ=255)

                                                                              aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac           <  2:3621271/93‑3 (MQ=255)

                                                                              aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac           >  1:3855927/1‑91 (MQ=255)

                                                                              aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac           <  2:4686773/93‑3 (MQ=255)

                                                                                 aaTCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGt        <  2:264433/93‑1 (MQ=255)

                                                                                 aaTCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGt        >  1:2498729/1‑93 (MQ=255)

                                                                                  aTCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGtt       <  1:618026/93‑1 (MQ=255)

                                                                                    ccATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTcc     <  2:1903875/93‑1 (MQ=255)

                                                                                     cATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTccc    <  1:3350131/93‑1 (MQ=255)

                                                                                     cATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTccc    >  1:1233091/1‑93 (MQ=255)

                                                                                     cATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTccc    >  1:1416164/1‑93 (MQ=255)

                                                                                      aTGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCg   <  1:1606041/93‑1 (MQ=255)

CTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGG  >  NC_000913/4016653‑4016832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGCTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGGATAA  >  NC_000913/4016650‑4016836

TGGCTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCT                                                                                               <  SRR4302535.1129224/94‑1 (MQ=60)

TGCCTGGTGGCACCGGCGACCTTACAGCGAAATTCTCCCTCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCT                                                                                               <  SRR4302535.1078377/94‑1 (MQ=60)

  GCTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCA                                                                                             <  SRR4302535.4225410/94‑1 (MQ=60)

  GCTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCA                                                                                             <  SRR4302535.3685489/94‑1 (MQ=60)

   CTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAA                                                                                            >  SRR4302535.3564185/1‑94 (MQ=60)

    TGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAA                                                                                           >  SRR4302535.4036869/1‑94 (MQ=60)

    TGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAA                                                                                           <  SRR4302535.202456/94‑1 (MQ=60)

     GGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAA                                                                                          <  SRR4302535.1273294/94‑1 (MQ=60)

       TGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATG                                                                                        <  SRR4302535.1797699/94‑1 (MQ=60)

       GGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATG                                                                                        <  SRR4302535.31631/94‑1 (MQ=60)

         GCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCACAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGG                                                                                      <  SRR4302535.2540241/94‑1 (MQ=60)

          CACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGC                                                                                     <  SRR4302535.18541/94‑1 (MQ=60)

          CACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGC                                                                                     >  SRR4302535.2957236/1‑94 (MQ=60)

          CACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGC                                                                                     >  SRR4302535.1243765/1‑94 (MQ=60)

          CACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGC                                                                                     >  SRR4302535.1401083/1‑94 (MQ=60)

           CCCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCC                                                                                    <  SRR4302535.3128423/94‑1 (MQ=60)

           ACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCC                                                                                    <  SRR4302535.3032384/94‑1 (MQ=60)

           ACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCC                                                                                    <  SRR4302535.4637931/94‑1 (MQ=60)

            CCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCG                                                                                   >  SRR4302535.2047021/1‑94 (MQ=60)

             CGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGC                                                                                  <  SRR4302535.1535436/94‑1 (MQ=60)

                CGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAG                                                                               <  SRR4302535.448847/94‑1 (MQ=60)

                 GACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGA                                                                              <  SRR4302535.2809549/94‑1 (MQ=60)

                  ACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAA                                                                             <  SRR4302535.3608189/94‑1 (MQ=60)

                   CCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAG                                                                            >  SRR4302535.3481918/1‑94 (MQ=60)

                   CCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAG                                                                            >  SRR4302535.3120136/1‑94 (MQ=60)

                   CCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAG                                                                            >  SRR4302535.4096894/1‑94 (MQ=60)

                   CCTGACAGCGAAAGTCTCCCGCCTGATCGGAGAAACGCGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAG                                                                            <  SRR4302535.2062383/94‑1 (MQ=60)

                    CTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGC                                                                           >  SRR4302535.2961598/1‑94 (MQ=60)

                    CTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGC                                                                           >  SRR4302535.742052/1‑94 (MQ=60)

                      GACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTG                                                                         <  SRR4302535.3540673/94‑1 (MQ=60)

                       ACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGC                                                                        <  SRR4302535.3062219/94‑1 (MQ=60)

                         AGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGT                                                                      >  SRR4302535.1506476/1‑94 (MQ=60)

                          GCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTA                                                                     >  SRR4302535.4311618/1‑94 (MQ=60)

                           CGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAA                                                                    >  SRR4302535.3781942/1‑94 (MQ=60)

                            GAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAAT                                                                   <  SRR4302535.4612365/94‑1 (MQ=60)

                            GAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAAT                                                                   >  SRR4302535.651594/1‑94 (MQ=60)

                            GAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAAT                                                                   <  SRR4302535.589382/94‑1 (MQ=60)

                            GAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAAT                                                                   <  SRR4302535.3244286/94‑1 (MQ=60)

                             AAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATA                                                                  <  SRR4302535.4112360/94‑1 (MQ=60)

                             AAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATA                                                                  >  SRR4302535.2165461/1‑94 (MQ=60)

                             AAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATA                                                                  <  SRR4302535.3858443/94‑1 (MQ=60)

                               ATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATC                                                                <  SRR4302535.3136934/94‑1 (MQ=60)

                               ATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATC                                                                <  SRR4302535.2343037/94‑1 (MQ=60)

                                TTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCG                                                               >  SRR4302535.487316/1‑94 (MQ=60)

                                TTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCG                                                               <  SRR4302535.4518647/94‑1 (MQ=60)

                                TTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCG                                                               >  SRR4302535.115717/1‑94 (MQ=60)

                                  CTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGT                                                             >  SRR4302535.3411139/1‑94 (MQ=60)

                                    CCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGT                                                           <  SRR4302535.4137200/94‑1 (MQ=60)

                                      CGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGA                                                         >  SRR4302535.3617995/1‑94 (MQ=60)

                                       GCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGAT                                                        <  SRR4302535.1232511/94‑1 (MQ=60)

                                        CCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATT                                                       >  SRR4302535.409190/1‑94 (MQ=60)

                                        CCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATT                                                       <  SRR4302535.2881015/94‑1 (MQ=60)

                                        CCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATT                                                       <  SRR4302535.756929/94‑1 (MQ=60)

                                        CCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATT                                                       >  SRR4302535.656225/1‑94 (MQ=60)

                                         CTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTG                                                      <  SRR4302535.4605387/94‑1 (MQ=60)

                                         CTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTG                                                      >  SRR4302535.3262604/1‑94 (MQ=60)

                                          TGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGG                                                     <  SRR4302535.2774590/94‑1 (MQ=60)

                                          TGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGG                                                     <  SRR4302535.3205928/94‑1 (MQ=60)

                                          TGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGG                                                     <  SRR4302535.735378/94‑1 (MQ=60)

                                            GTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCA                                                   <  SRR4302535.1025133/94‑1 (MQ=60)

                                            GTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCA                                                   <  SRR4302535.2691842/94‑1 (MQ=60)

                                            GTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCATAATATCGGTGTGATTGGCA                                                   <  SRR4302535.2688134/94‑1 (MQ=60)

                                              CGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAAC                                                 >  SRR4302535.643790/1‑94 (MQ=60)

                                               GGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACG                                                >  SRR4302535.3503765/1‑94 (MQ=60)

                                               GGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACG                                                >  SRR4302535.4662475/1‑94 (MQ=60)

                                                GAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGT                                               >  SRR4302535.3764692/1‑94 (MQ=60)

                                                  GAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTG                                             >  SRR4302535.4334291/1‑94 (MQ=60)

                                                  GAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTG                                             <  SRR4302535.646979/94‑1 (MQ=60)

                                                  GAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTG                                             <  SRR4302535.3175295/94‑1 (MQ=60)

                                                   AAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGA                                            <  SRR4302535.2920285/94‑1 (MQ=60)

                                                     ACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGT                                          <  SRR4302535.4144448/94‑1 (MQ=60)

                                                      CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTG                                         <  SRR4302535.2352829/94‑1 (MQ=60)

                                                      CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTG                                         <  SRR4302535.1239353/94‑1 (MQ=60)

                                                      CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTG                                         <  SRR4302535.101861/94‑1 (MQ=60)

                                                       TGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGT                                        >  SRR4302535.2477670/1‑94 (MQ=60)

                                                       TGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGT                                        <  SRR4302535.2840923/94‑1 (MQ=60)

                                                        GGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTG                                       <  SRR4302535.1854610/94‑1 (MQ=60)

                                                        GGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTG                                       >  SRR4302535.4274828/1‑94 (MQ=60)

                                                          CAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTT                                     <  SRR4302535.4519310/94‑1 (MQ=60)

                                                           AAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTC                                    <  SRR4302535.1011994/94‑1 (MQ=60)

                                                            AAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCA                                   <  SRR4302535.1843543/94‑1 (MQ=60)

                                                             AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                  <  SRR4302535.3558087/94‑1 (MQ=60)

                                                             AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                  >  SRR4302535.888789/1‑94 (MQ=60)

                                                             AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                  <  SRR4302535.1667204/94‑1 (MQ=60)

                                                             AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                  >  SRR4302535.4409867/1‑94 (MQ=60)

                                                             AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                  <  SRR4302535.2762949/94‑1 (MQ=60)

                                                              GTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGG                                 <  SRR4302535.3525092/94‑1 (MQ=60)

                                                              GTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGG                                 >  SRR4302535.1003573/1‑94 (MQ=60)

                                                                GGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCG                               >  SRR4302535.1798006/1‑94 (MQ=60)

                                                                 GTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGA                              >  SRR4302535.3460067/1‑94 (MQ=60)

                                                                   CCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAC                            >  SRR4302535.4594932/1‑94 (MQ=60)

                                                                    CTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACG                           >  SRR4302535.3223702/1‑94 (MQ=60)

                                                                      TGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCT                         <  SRR4302535.4524731/94‑1 (MQ=60)

                                                                       GCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTG                        <  SRR4302535.835433/94‑1 (MQ=60)

                                                                       GCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTG                        >  SRR4302535.2782757/1‑94 (MQ=60)

                                                                       GCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTG                        >  SRR4302535.1775857/1‑94 (MQ=60)

                                                                        CTGATATCAATGAATCCATGCTCAAAATGGGACGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGA                       >  SRR4302535.162285/1‑94 (MQ=60)

                                                                         TGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAG                      >  SRR4302535.2869625/1‑94 (MQ=60)

                                                                          GATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGG                     >  SRR4302535.1396181/1‑94 (MQ=60)

                                                                           ATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGC                    >  SRR4302535.1146041/1‑94 (MQ=60)

                                                                           ATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGC                    <  SRR4302535.1487934/94‑1 (MQ=60)

                                                                            TATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCG                   <  SRR4302535.3798807/94‑1 (MQ=60)

                                                                            TATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCG                   >  SRR4302535.738475/1‑94 (MQ=60)

                                                                             ATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGC                  >  SRR4302535.3927129/1‑94 (MQ=60)

                                                                              TCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCT                 <  SRR4302535.3799323/94‑1 (MQ=60)

                                                                              TCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCT                 <  SRR4302535.1476230/94‑1 (MQ=60)

                                                                               CAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTA                >  SRR4302535.1982894/1‑94 (MQ=60)

                                                                               CAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTA                >  SRR4302535.1812591/1‑94 (MQ=60)

                                                                                AATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTAC               >  SRR4302535.3882477/1‑94 (MQ=60)

                                                                                 ATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACC              <  SRR4302535.3537503/94‑1 (MQ=60)

                                                                                 ATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACC              <  SRR4302535.3091484/94‑1 (MQ=60)

                                                                                 ATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACC              <  SRR4302535.4220922/94‑1 (MQ=60)

                                                                                  TGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCG             >  SRR4302535.3262358/1‑94 (MQ=60)

                                                                                   GAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGT            >  SRR4302535.2516756/1‑94 (MQ=60)

                                                                                    AATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTT           <  SRR4302535.1737793/94‑1 (MQ=60)

                                                                                     ATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTC          <  SRR4302535.4568437/94‑1 (MQ=60)

                                                                                     ATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTC          <  SRR4302535.622323/94‑1 (MQ=60)

                                                                                      TCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCC         <  SRR4302535.1621174/94‑1 (MQ=60)

                                                                                       CTATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCC        <  SRR4302535.3063998/94‑1 (MQ=60)

                                                                                       CCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCC        >  SRR4302535.1426273/1‑94 (MQ=60)

                                                                                       CCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCC        >  SRR4302535.1241909/1‑94 (MQ=60)

                                                                                        CATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCG       <  SRR4302535.3373467/94‑1 (MQ=60)

                                                                                         ATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGG      <  SRR4302535.1617630/94‑1 (MQ=60)

                                                                                         ATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGG      >  SRR4302535.974589/1‑94 (MQ=60)

                                                                                         ATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGG      >  SRR4302535.983332/1‑94 (MQ=60)

                                                                                          TGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGA     >  SRR4302535.2506496/1‑94 (MQ=60)

                                                                                           GCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGAT    <  SRR4302535.3013147/94‑1 (MQ=60)

                                                                                            CTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATA   <  SRR4302535.2763629/94‑1 (MQ=60)

                                                                                             TCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAA  <  SRR4302535.1775428/94‑1 (MQ=60)

TGGCTGGTGGCACCGGCGACCTGACAGCGAAATTCTCCCGCCTGGTCGGAGAAACTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGGATAA  >  NC_000913/4016650‑4016836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`