Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,016,797	A→G	Y119C (TAT→TGT)	ubiE →	UbiE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,016,797	0	A	G	100.0%	895.5 / NA	277	Y119C (TAT→TGT)	ubiE	UbiE
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (139/138); total (139/138)

Only 100 of 287 total aligned reads displayed.

GCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACA  >  NC_000913/4016707‑4016886

  aaaGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGtt                                                                                       >  2:944763/1‑93 (MQ=255)

  aaaGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGtt                                                                                       <  1:1004855/93‑1 (MQ=255)

  aaaGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGtt                                                                                       >  2:2777296/1‑93 (MQ=255)

    aGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCa                                                                                     <  1:2743396/93‑1 (MQ=255)

    aGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCa                                                                                     <  1:3533554/93‑1 (MQ=255)

    aGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCa                                                                                     <  2:3353633/93‑1 (MQ=255)

     gTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAg                                                                                    <  1:3500754/93‑1 (MQ=255)

          ccTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGaa                                                                               <  2:786850/93‑1 (MQ=255)

           cTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAc                                                                              >  2:2391077/1‑93 (MQ=255)

           cTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAc                                                                              >  2:4305151/1‑93 (MQ=255)

           cTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAc                                                                              >  2:1255819/1‑93 (MQ=255)

            ttGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACg                                                                             >  1:3201536/1‑93 (MQ=255)

              gCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCt                                                                           <  1:829622/93‑1 (MQ=255)

               cTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTg                                                                          <  2:4124019/93‑1 (MQ=255)

               cTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTg                                                                          >  1:1763085/1‑93 (MQ=255)

                  atatCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAgg                                                                       <  2:2895106/93‑1 (MQ=255)

                   tatCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGgc                                                                      <  2:159283/93‑1 (MQ=255)

                    atCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGgcg                                                                     >  2:1505575/1‑93 (MQ=255)

                     tCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGgcgc                                                                    <  1:3773295/93‑1 (MQ=255)

                       aaTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCta                                                                  >  1:1799578/1‑92 (MQ=255)

                        aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac                                                                 <  2:4686773/93‑3 (MQ=255)

                        aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac                                                                 <  2:358095/93‑3 (MQ=255)

                        aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac                                                                 <  2:3621272/93‑3 (MQ=255)

                        aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac                                                                 >  1:3855927/1‑91 (MQ=255)

                        aTGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCtac                                                                 <  1:4192233/93‑3 (MQ=255)

                           aaTCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGt                                                              >  1:2498729/1‑93 (MQ=255)

                           aaTCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGt                                                              <  1:1725315/93‑1 (MQ=255)

                            aTCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGtt                                                             <  1:618026/93‑1 (MQ=255)

                             tCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTc                                                            <  1:1609569/93‑1 (MQ=255)

                              ccATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTcc                                                           <  2:1903875/93‑1 (MQ=255)

                               cATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTccc                                                          <  1:3350131/93‑1 (MQ=255)

                                aTGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTGCCCg                                                         <  2:2541969/93‑1 (MQ=255)

                                 tGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCgg                                                        >  1:967712/1‑93 (MQ=255)

                                   ctcAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGAt                                                      <  2:532056/91‑1 (MQ=255)

                                     cAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATaa                                                    <  2:3869509/93‑1 (MQ=255)

                                       aaaTGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAaca                                                  >  1:1643402/1‑93 (MQ=255)

                                        aaTGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAacac                                                 >  2:1382402/1‑93 (MQ=255)

                                           gggCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCtt                                              >  1:2233394/1‑93 (MQ=255)

                                            ggCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCttt                                             <  2:1165206/93‑1 (MQ=255)

                                              ccGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGa                                           <  2:4229211/93‑1 (MQ=255)

                                              ccGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGa                                           <  1:2954346/93‑1 (MQ=255)

                                               cgcgAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAt                                          >  1:4438431/1‑93 (MQ=255)

                                                gcgAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAtt                                         >  2:3722733/1‑93 (MQ=255)

                                                gcgAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAtt                                         <  2:3744155/93‑1 (MQ=255)

                                                gcgAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAtt                                         >  1:1498057/1‑93 (MQ=255)

                                                gcgAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAtt                                         >  2:4650303/1‑93 (MQ=255)

                                                cggagaAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAtt                                         <  1:2855974/91‑1 (MQ=255)

                                                 cgAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTg                                        >  1:4273765/1‑93 (MQ=255)

                                                  gagaAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGc                                       <  2:2458531/93‑1 (MQ=255)

                                                  gagaAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGc                                       >  1:2811004/1‑93 (MQ=255)

                                                  gagaAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGc                                       >  1:1400925/1‑93 (MQ=255)

                                                    gaAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCAt                                     >  2:4479435/1‑93 (MQ=255)

                                                     aaGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATc                                    >  1:4683761/1‑93 (MQ=255)

                                                      aGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCa                                   <  1:4047658/93‑1 (MQ=255)

                                                        cTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCAcc                                 >  1:431629/1‑93 (MQ=255)

                                                         tGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCa                                <  2:4048963/93‑1 (MQ=255)

                                                         tGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCa                                >  2:3191196/1‑93 (MQ=255)

                                                         tGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCa                                >  1:1877428/1‑93 (MQ=255)

                                                          gCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCAt                               <  1:2482524/93‑1 (MQ=255)

                                                          gCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCAt                               <  2:3231526/93‑1 (MQ=255)

                                                            gTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCGTCACCAttt                             <  1:1463023/93‑1 (MQ=255)

                                                            gTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCAttt                             >  1:4515478/1‑93 (MQ=255)

                                                            gTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCAttt                             >  2:1007411/1‑93 (MQ=255)

                                                             tAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTc                            <  2:567865/93‑1 (MQ=255)

                                                              aaTATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCg                           <  2:1834667/93‑1 (MQ=255)

                                                               atatCGGTGTGATTGTCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGt                          <  1:1971352/93‑1 (MQ=255)

                                                               atatCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCTTCA‑CATTTTGtt                         >  2:230018/1‑93 (MQ=255)

                                                               atatCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGt                          >  2:2239106/1‑93 (MQ=255)

                                                                tatCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGtt                         <  2:2625053/93‑1 (MQ=255)

                                                                 atgggTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGttt                        <  1:1379727/90‑1 (MQ=255)

                                                                  tctgtgtGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCTTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTg                       <  2:4574929/90‑1 (MQ=255)

                                                                  tCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTg                       <  1:1296559/93‑1 (MQ=255)

                                                                    ggTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGt                     >  1:692009/1‑93 (MQ=255)

                                                                    ggTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGt                     <  1:3482609/93‑1 (MQ=255)

                                                                     gtgtGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTc                    >  2:3985256/1‑93 (MQ=255)

                                                                     gtgtGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTc                    >  2:19300/1‑93 (MQ=255)

                                                                       gtgATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTg                  <  1:1072335/93‑1 (MQ=255)

                                                                        tgATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGc                 >  2:665308/1‑93 (MQ=255)

                                                                        tgATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGc                 >  2:602402/1‑93 (MQ=255)

                                                                        tgATTGGAAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCTCTACCGTTCCCGGATAACGCCTTTGATTGCATCACCATTTCGTTTGGTCTGc                 <  2:209896/93‑1 (MQ=255)

                                                                         gATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCg                >  2:168984/1‑93 (MQ=255)

                                                                          aTTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGt               >  1:4623351/1‑93 (MQ=255)

                                                                          aTTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGt               <  2:1425680/93‑1 (MQ=255)

                                                                           ttGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTa              >  2:266190/1‑93 (MQ=255)

                                                                           ttGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTa              <  2:2155747/93‑1 (MQ=255)

                                                                             ggCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAAc            <  2:286066/93‑1 (MQ=255)

                                                                              gCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACg           >  2:2059325/1‑93 (MQ=255)

                                                                              gCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACg           >  1:3956560/1‑93 (MQ=255)

                                                                               cAACGGTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGt          <  1:74897/93‑1 (MQ=255)

                                                                                aaCGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTc         <  2:1119166/93‑1 (MQ=255)

                                                                                 aCGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCa        >  2:252786/1‑93 (MQ=255)

                                                                                 aCGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCa        <  2:2023670/93‑1 (MQ=255)

                                                                                 aCGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCa        >  1:3065826/1‑93 (MQ=255)

                                                                                  cGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCAc       >  1:1542325/1‑93 (MQ=255)

                                                                                  cGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCAc       <  2:1089979/93‑1 (MQ=255)

                                                                                   gTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCAcc      >  2:1986827/1‑93 (MQ=255)

                                                                                   gTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCAcc      >  2:4373019/1‑93 (MQ=255)

                                                                                   gTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCAcc      >  2:2505411/1‑93 (MQ=255)

                                                                                   gTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAAAACCTTTGATTGCATCACCCTTTCGTTTGGTCTGCCTAACGTCAcc      >  1:3705157/1‑93 (MQ=255)

                                                                                      gAGTGTGTTCAGGCGAACGCTGAGTCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGAc   >  2:1612530/1‑93 (MQ=255)

GCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACA  >  NC_000913/4016707‑4016886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACAAAGA  >  NC_000913/4016704‑4016890

CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTG                                                                                               <  SRR4302535.101861/94‑1 (MQ=60)

CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTG                                                                                               <  SRR4302535.2352829/94‑1 (MQ=60)

CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTG                                                                                               <  SRR4302535.1239353/94‑1 (MQ=60)

 TGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGT                                                                                              >  SRR4302535.2477670/1‑94 (MQ=60)

 TGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGT                                                                                              <  SRR4302535.2840923/94‑1 (MQ=60)

  GGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTG                                                                                             <  SRR4302535.1854610/94‑1 (MQ=60)

  GGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTG                                                                                             >  SRR4302535.4274828/1‑94 (MQ=60)

    CAAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTT                                                                                           <  SRR4302535.4519310/94‑1 (MQ=60)

     AAAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTC                                                                                          <  SRR4302535.1011994/94‑1 (MQ=60)

      AAGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCA                                                                                         <  SRR4302535.1843543/94‑1 (MQ=60)

       AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                                                                        <  SRR4302535.1667204/94‑1 (MQ=60)

       AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                                                                        <  SRR4302535.3558087/94‑1 (MQ=60)

       AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                                                                        >  SRR4302535.888789/1‑94 (MQ=60)

       AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                                                                        >  SRR4302535.4409867/1‑94 (MQ=60)

       AGTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAG                                                                                        <  SRR4302535.2762949/94‑1 (MQ=60)

        GTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGG                                                                                       >  SRR4302535.1003573/1‑94 (MQ=60)

        GTGGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGG                                                                                       <  SRR4302535.3525092/94‑1 (MQ=60)

          GGTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCG                                                                                     >  SRR4302535.1798006/1‑94 (MQ=60)

           GTCCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGA                                                                                    >  SRR4302535.3460067/1‑94 (MQ=60)

             CCTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAAC                                                                                  >  SRR4302535.4594932/1‑94 (MQ=60)

              CTTGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACG                                                                                 >  SRR4302535.3223702/1‑94 (MQ=60)

                TGCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCT                                                                               <  SRR4302535.4524731/94‑1 (MQ=60)

                 GCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTG                                                                              >  SRR4302535.2782757/1‑94 (MQ=60)

                 GCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTG                                                                              >  SRR4302535.1775857/1‑94 (MQ=60)

                 GCTGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTG                                                                              <  SRR4302535.835433/94‑1 (MQ=60)

                  CTGATATCAATGAATCCATGCTCAAAATGGGACGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGA                                                                             >  SRR4302535.162285/1‑94 (MQ=60)

                   TGATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAG                                                                            >  SRR4302535.2869625/1‑94 (MQ=60)

                    GATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGG                                                                           >  SRR4302535.1396181/1‑94 (MQ=60)

                     ATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGC                                                                          >  SRR4302535.1146041/1‑94 (MQ=60)

                     ATATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGC                                                                          <  SRR4302535.1487934/94‑1 (MQ=60)

                      TATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCG                                                                         >  SRR4302535.738475/1‑94 (MQ=60)

                      TATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCG                                                                         <  SRR4302535.3798807/94‑1 (MQ=60)

                       ATCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGC                                                                        >  SRR4302535.3927129/1‑94 (MQ=60)

                        TCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCT                                                                       <  SRR4302535.3799323/94‑1 (MQ=60)

                        TCAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCT                                                                       <  SRR4302535.1476230/94‑1 (MQ=60)

                         CAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTA                                                                      >  SRR4302535.1982894/1‑94 (MQ=60)

                         CAATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTA                                                                      >  SRR4302535.1812591/1‑94 (MQ=60)

                          AATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTAC                                                                     >  SRR4302535.3882477/1‑94 (MQ=60)

                           ATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACC                                                                    <  SRR4302535.3091484/94‑1 (MQ=60)

                           ATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACC                                                                    <  SRR4302535.3537503/94‑1 (MQ=60)

                           ATGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACC                                                                    <  SRR4302535.4220922/94‑1 (MQ=60)

                            TGAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCG                                                                   >  SRR4302535.3262358/1‑94 (MQ=60)

                             GAATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGT                                                                  >  SRR4302535.2516756/1‑94 (MQ=60)

                              AATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTT                                                                 <  SRR4302535.1737793/94‑1 (MQ=60)

                               ATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTC                                                                <  SRR4302535.4568437/94‑1 (MQ=60)

                               ATCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTC                                                                <  SRR4302535.622323/94‑1 (MQ=60)

                                TCCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCC                                                               <  SRR4302535.1621174/94‑1 (MQ=60)

                                 CTATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCC                                                              <  SRR4302535.3063998/94‑1 (MQ=60)

                                 CCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCC                                                              >  SRR4302535.1426273/1‑94 (MQ=60)

                                 CCATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCC                                                              >  SRR4302535.1241909/1‑94 (MQ=60)

                                  CATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCG                                                             <  SRR4302535.3373467/94‑1 (MQ=60)

                                   ATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGG                                                            >  SRR4302535.974589/1‑94 (MQ=60)

                                   ATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGG                                                            >  SRR4302535.983332/1‑94 (MQ=60)

                                   ATGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGG                                                            <  SRR4302535.1617630/94‑1 (MQ=60)

                                    TGCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGA                                                           >  SRR4302535.2506496/1‑94 (MQ=60)

                                     GCTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGAT                                                          <  SRR4302535.3013147/94‑1 (MQ=60)

                                      CTCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATA                                                         <  SRR4302535.2763629/94‑1 (MQ=60)

                                       TCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAA                                                        <  SRR4302535.1775428/94‑1 (MQ=60)

                                        CAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAAC                                                       >  SRR4302535.4337921/1‑94 (MQ=60)

                                        CAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAAC                                                       <  SRR4302535.1794205/94‑1 (MQ=60)

                                         AAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACC                                                      >  SRR4302535.644756/1‑94 (MQ=60)

                                         AAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACA                                                      >  SRR4302535.1655280/1‑94 (MQ=60)

                                          AAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACAC                                                     >  SRR4302535.832557/1‑94 (MQ=60)

                                            ATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCT                                                   >  SRR4302535.3206148/1‑94 (MQ=60)

                                             TGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCTCGGATAACACCTT                                                  >  SRR4302535.2695897/1‑94 (MQ=60)

                                             TGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTT                                                  <  SRR4302535.1640577/94‑1 (MQ=60)

                                             TGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTT                                                  >  SRR4302535.2249278/1‑94 (MQ=60)

                                              GGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTT                                                 <  SRR4302535.1524647/94‑1 (MQ=60)

                                              GGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTT                                                 <  SRR4302535.3529140/94‑1 (MQ=60)

                                                 CCGCGAGAAGCTGCGTAGTATCGGTGTGATTGGCAATGTTGAGTGTGTTCAGGCGAACGCTGAGGAGCTACCGTTCCCGGATAACACCTTTGAT                                              >  SRR4302535.3834297/1‑94 (MQ=60)

                                                 CCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAT                                              <  SRR4302535.2975098/94‑1 (MQ=60)

                                                 CCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAT                                              >  SRR4302535.3509213/1‑94 (MQ=60)

                                                 CCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAT                                              >  SRR4302535.4468853/1‑94 (MQ=60)

                                                 CCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGAT                                              <  SRR4302535.725377/94‑1 (MQ=60)

                                                 CCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACAGTTCCCGGATAACACCTTTGAT                                              <  SRR4302535.4680154/94‑1 (MQ=60)

                                                  CGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATT                                             >  SRR4302535.1766743/1‑94 (MQ=60)

                                                  CGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATT                                             >  SRR4302535.1508829/1‑94 (MQ=60)

                                                   cgGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTG                                            <  SRR4302535.2876211/92‑1 (MQ=60)

                                                   GCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTG                                            >  SRR4302535.4303020/1‑94 (MQ=60)

                                                    CGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGC                                           <  SRR4302535.3483597/94‑1 (MQ=60)

                                                    CGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGC                                           >  SRR4302535.1410922/1‑94 (MQ=60)

                                                    CGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGC                                           >  SRR4302535.2830988/1‑94 (MQ=60)

                                                      AGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCAT                                         <  SRR4302535.4004062/94‑1 (MQ=60)

                                                       GAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATC                                        >  SRR4302535.1962857/1‑94 (MQ=60)

                                                       GAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATC                                        >  SRR4302535.4715436/1‑94 (MQ=60)

                                                        AAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCA                                       <  SRR4302535.1544790/94‑1 (MQ=60)

                                                         AGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCAC                                      <  SRR4302535.4075365/94‑1 (MQ=60)

                                                          GCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACC                                     >  SRR4302535.2602251/1‑94 (MQ=60)

                                                          GCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACC                                     >  SRR4302535.434635/1‑94 (MQ=60)

                                                           CTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCA                                    <  SRR4302535.52651/94‑1 (MQ=60)

                                                           CTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCA                                    >  SRR4302535.1890953/1‑94 (MQ=60)

                                                           CTGCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCA                                    >  SRR4302535.378605/1‑94 (MQ=60)

                                                             GCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATT                                  <  SRR4302535.2500424/94‑1 (MQ=60)

                                                             GCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATT                                  <  SRR4302535.2503274/94‑1 (MQ=60)

                                                             GCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATT                                  <  SRR4302535.3821559/94‑1 (MQ=60)

                                                             GCGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATT                                  >  SRR4302535.442044/1‑94 (MQ=60)

                                                              CGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTT                                 >  SRR4302535.2196964/1‑94 (MQ=60)

                                                              CGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTT                                 >  SRR4302535.4546437/1‑94 (MQ=60)

                                                              CGTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTT                                 >  SRR4302535.4154271/1‑94 (MQ=60)

                                                               GTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCGTCACCATTTC                                <  SRR4302535.1473504/94‑1 (MQ=60)

                                                               GTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTC                                <  SRR4302535.2942280/94‑1 (MQ=60)

                                                               GTAATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTC                                <  SRR4302535.4145123/94‑1 (MQ=60)

                                                                 AATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGT                              >  SRR4302535.1407417/1‑94 (MQ=60)

                                                                  ATATCGGTGTGATTGTCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTT                             <  SRR4302535.1985549/94‑1 (MQ=60)

                                                                  ATATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTT                             >  SRR4302535.1424926/1‑94 (MQ=60)

                                                                   TATCGGTGTGATTGGCAGCGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTT                            <  SRR4302535.2011297/94‑1 (MQ=60)

                                                                    ATGGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTG                           <  SRR4302535.1389567/94‑1 (MQ=60)

                                                                    ATCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTG                           <  SRR4302535.3657081/94‑1 (MQ=60)

                                                                     TCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGG                          <  SRR4302535.1305809/94‑1 (MQ=60)

                                                                     TCGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGG                          <  SRR4302535.932680/94‑1 (MQ=60)

                                                                      CGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGT                         >  SRR4302535.696858/1‑94 (MQ=60)

                                                                      CGGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGT                         <  SRR4302535.2867547/94‑1 (MQ=60)

                                                                       GGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATGACACCTTTGATTGCATCACCATTTCGTTTGGTC                        >  SRR4302535.1342282/1‑94 (MQ=60)

                                                                       GGTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTC                        <  SRR4302535.3506793/94‑1 (MQ=60)

                                                                        GTGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCT                       >  SRR4302535.2959676/1‑94 (MQ=60)

                                                                         TGTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTG                      <  SRR4302535.4034253/94‑1 (MQ=60)

                                                                          GTGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGC                     <  SRR4302535.1079958/94‑1 (MQ=60)

                                                                           TGATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCG                    <  SRR4302535.1889987/94‑1 (MQ=60)

                                                                            GATTGGCATCGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGT                   <  SRR4302535.362311/94‑1 (MQ=60)

                                                                            GATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGT                   >  SRR4302535.1063956/1‑94 (MQ=60)

                                                                            GATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGT                   >  SRR4302535.4654752/1‑94 (MQ=60)

                                                                             ATTGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTA                  >  SRR4302535.4260562/1‑94 (MQ=60)

                                                                               TGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAAC                <  SRR4302535.1342333/94‑1 (MQ=60)

                                                                               TGGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAAC                >  SRR4302535.3520786/1‑94 (MQ=60)

                                                                                GGCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACG               >  SRR4302535.3983574/1‑94 (MQ=60)

                                                                                 GCAACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGT              <  SRR4302535.1697785/94‑1 (MQ=60)

                                                                                  CAACGGTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTC             <  SRR4302535.75445/94‑1 (MQ=60)

                                                                                   AACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCA            <  SRR4302535.2412095/94‑1 (MQ=60)

                                                                                   AACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCA            >  SRR4302535.3087253/1‑94 (MQ=60)

                                                                                   AACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCA            <  SRR4302535.474817/94‑1 (MQ=60)

                                                                                   AACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCA            >  SRR4302535.630433/1‑94 (MQ=60)

                                                                                    ACGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCAC           >  SRR4302535.1553443/1‑94 (MQ=60)

                                                                                     CGTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAAAACCTTTGATTGCATCACCCTTTCGTTTGGTCTGCCTAACGTCACC          >  SRR4302535.3730816/1‑94 (MQ=60)

                                                                                      GTTGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCG         >  SRR4302535.756263/1‑94 (MQ=60)

                                                                                        TGAGTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGAC       <  SRR4302535.432503/94‑1 (MQ=60)

                                                                                           GTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACAAA    >  SRR4302535.2129367/1‑94 (MQ=60)

                                                                                           GTGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACAAA    <  SRR4302535.4454273/94‑1 (MQ=60)

                                                                                            TGTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACAAAG   >  SRR4302535.1223502/1‑94 (MQ=60)

                                                                                             GTGTTCAGGCGAACGCTGAGGCGCTACCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACAAAGA  >  SRR4302535.2221609/1‑94 (MQ=60)

CTGGCAAAGTGGTCCTTGCTGATATCAATGAATCCATGCCCAAAATGGGCCGCGAGAAGCTGCGTAATATCGGTGTGATTGGCAACGTTGAGTATGTTCAGGCGAACGCTGAGGCGCTGCCGTTCCCGGATAACACCTTTGATTGCATCACCATTTCGTTTGGTCTGCGTAACGTCACCGACAAAGA  >  NC_000913/4016704‑4016890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`