Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,267,958	T→C	S48P (TCT→CCT)	yjbQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,267,958	0	T	C	100.0%	766.0 / NA	240	S48P (TCT→CCT)	yjbQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/104); total (136/104)

Only 100 of 254 total aligned reads displayed.

CTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCTCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTAT  >  NC_000913/4267868‑4268047

cTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCccct                                                                                         <  2:2236411/93‑1 (MQ=255)

cTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCccct                                                                                         >  1:2730176/1‑93 (MQ=255)

cTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCCGCAACATTCCCCCGCccct                                                                                         <  2:2929027/93‑1 (MQ=255)

 tGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCccctc                                                                                        <  1:2216416/93‑1 (MQ=255)

  ggTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCccctct                                                                                       <  1:4463460/93‑1 (MQ=255)

   gTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTg                                                                                      <  1:3626023/93‑1 (MQ=255)

    tAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTgc                                                                                     >  2:355596/1‑92 (MQ=255)

      aCGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGaca                                                                                   <  2:1264467/93‑1 (MQ=255)

       cGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGacac                                                                                  >  2:2435717/1‑93 (MQ=255)

        ggctGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACt                                                                                 <  1:3280642/90‑1 (MQ=255)

        ggATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACt                                                                                 >  1:1350315/1‑93 (MQ=255)

         gATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACtt                                                                                >  2:1819935/1‑93 (MQ=255)

         gATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACtt                                                                                >  1:4073026/1‑93 (MQ=255)

         gATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACtt                                                                                >  1:412249/1‑93 (MQ=255)

         gATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACtt                                                                                >  1:4229161/1‑93 (MQ=255)

           tGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTaa                                                                              >  2:159440/1‑93 (MQ=255)

           tGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTaa                                                                              <  2:4264695/93‑1 (MQ=255)

            gAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAAt                                                                             <  2:3824917/93‑1 (MQ=255)

              aaTTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATga                                                                           >  1:868996/1‑93 (MQ=255)

              aaTTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATga                                                                           <  2:4057799/93‑1 (MQ=255)

               aTTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATgag                                                                          >  1:1876436/1‑93 (MQ=255)

                 tCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGaa                                                                        <  2:2723984/93‑1 (MQ=255)

                   tGAATCAGCTGGGTGATATGCCGCGCGTTAACCTCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACt                                                                      <  1:2945325/93‑1 (MQ=255)

                   tGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACt                                                                      <  1:918880/93‑1 (MQ=255)

                      aTCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCg                                                                   >  2:336219/1‑93 (MQ=255)

                       tCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGa                                                                  <  2:2690775/93‑1 (MQ=255)

                       tCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGa                                                                  <  2:80845/93‑1 (MQ=255)

                       tCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGa                                                                  >  2:2355674/1‑93 (MQ=255)

                       tCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGa                                                                  <  1:1467497/93‑1 (MQ=255)

                        cAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGAt                                                                 <  2:2047566/93‑1 (MQ=255)

                        cAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGAt                                                                 <  1:3402392/93‑1 (MQ=255)

                         aGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACGTCCGCCCCTCTGACACTTAATGAGAACTGCGATc                                                                >  1:4014228/1‑93 (MQ=255)

                         aGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATc                                                                >  2:183512/1‑93 (MQ=255)

                         aGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATc                                                                >  1:4594368/1‑93 (MQ=255)

                          gctggctgATATGCCTCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATcc                                                               >  1:228974/1‑93 (MQ=255)

                          gctggctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATcc                                                               >  1:509410/1‑93 (MQ=255)

                          gctggctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATcc                                                               >  2:4668341/1‑93 (MQ=255)

                          gctggctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATcc                                                               <  1:1716777/93‑1 (MQ=255)

                          gctggctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATcc                                                               >  1:4518976/1‑93 (MQ=255)

                            tggctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCa                                                             <  1:3046047/93‑1 (MQ=255)

                            tggctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCa                                                             <  1:1710582/93‑1 (MQ=255)

                              gctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCAcc                                                           >  1:1394551/1‑93 (MQ=255)

                              gctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCAcc                                                           >  1:4104460/1‑93 (MQ=255)

                               ctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCg                                                          <  2:1550466/93‑1 (MQ=255)

                               ctgATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCg                                                          <  1:2038591/93‑1 (MQ=255)

                                tgATATGCAGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGt                                                         <  1:1910390/93‑1 (MQ=255)

                                 gATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTa                                                        >  2:1113515/1‑93 (MQ=255)

                                 gATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTa                                                        <  1:4164707/93‑1 (MQ=255)

                                 gATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTa                                                        >  2:3050393/1‑93 (MQ=255)

                                  atatGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTAc                                                       <  2:480710/93‑1 (MQ=255)

                                  atatGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTAc                                                       <  1:4269717/93‑1 (MQ=255)

                                       ccGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCAc                                                  <  1:3762029/93‑1 (MQ=255)

                                         gcgcgTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGa                                                <  1:1193830/93‑1 (MQ=255)

                                          cgcgTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGAc                                               <  2:3431839/93‑1 (MQ=255)

                                           gcgTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACa                                              >  2:1783178/1‑93 (MQ=255)

                                           gcgTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCAACGACa                                              >  2:4119578/1‑93 (MQ=255)

                                            cgTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACAt                                             >  1:2579722/1‑93 (MQ=255)

                                              ttAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATgg                                           >  1:2371888/1‑93 (MQ=255)

                                              ttAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATgg                                           <  2:2208127/93‑1 (MQ=255)

                                              ttAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATgg                                           >  1:2481205/1‑93 (MQ=255)

                                               tAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGa                                          <  2:3659073/93‑1 (MQ=255)

                                                  cATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCg                                       >  2:1947624/1‑93 (MQ=255)

                                                   aTCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCGCGACATGGAGCGt                                      >  1:1824619/1‑93 (MQ=255)

                                                     cGGCTTACTGCATCTGTTGCTGCAACATATCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACTCTACGCCACGACATGGAGCGttt                                    >  2:3218610/1‑93 (MQ=255)

                                                      ggCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGgttt                                   >  2:1689193/1‑93 (MQ=255)

                                                        cTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGtttttt                                 <  1:2457582/93‑1 (MQ=255)

                                                          tACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTtcc                               >  2:885385/1‑93 (MQ=255)

                                                            cTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTtcctc                             >  1:1110442/1‑93 (MQ=255)

                                                            cTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTtcctc                             >  1:1000647/1‑93 (MQ=255)

                                                             tGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTtcctcc                            >  2:2853069/1‑93 (MQ=255)

                                                             tGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTtcctcc                            <  2:3147507/93‑1 (MQ=255)

                                                              gCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCg                           >  1:1655480/1‑93 (MQ=255)

                                                              gCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCg                           >  2:2357067/1‑93 (MQ=255)

                                                                 tCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCAc                        <  1:1624724/93‑1 (MQ=255)

                                                                   tGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCg                      >  2:3632176/1‑93 (MQ=255)

                                                                    tttGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGt                     <  1:760313/92‑1 (MQ=255)

                                                                    gTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGt                     >  2:2582718/1‑93 (MQ=255)

                                                                    gTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGt                     <  1:1081240/93‑1 (MQ=255)

                                                                     ttGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGtt                    <  2:1964659/93‑1 (MQ=255)

                                                                     ttGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGtt                    >  2:2999802/1‑93 (MQ=255)

                                                                     ttGCGGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCttt                    <  2:1397288/93‑1 (MQ=255)

                                                                        ctgcAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTccc                 <  2:1010349/93‑1 (MQ=255)

                                                                         tgcAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCg                >  1:4412079/1‑93 (MQ=255)

                                                                          gcAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGa               >  1:576882/1‑93 (MQ=255)

                                                                          gcAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGa               >  1:3189298/1‑93 (MQ=255)

                                                                          gcAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGa               >  2:3876840/1‑93 (MQ=255)

                                                                           cAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGAc              >  2:1812371/1‑93 (MQ=255)

                                                                            aaCATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACa             >  1:3504127/1‑93 (MQ=255)

                                                                            aaCATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACa             >  2:4308151/1‑93 (MQ=255)

                                                                             aCATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACaa            <  2:1867615/93‑1 (MQ=255)

                                                                              cATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAAc           <  1:2258277/93‑1 (MQ=255)

                                                                              cATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAAc           <  2:55365/93‑1 (MQ=255)

                                                                              cATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAAc           >  2:657658/1‑93 (MQ=255)

                                                                              cATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAAc           >  1:4305927/1‑93 (MQ=255)

                                                                                 aCCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGa        <  2:4576167/93‑1 (MQ=255)

                                                                                   cTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGaaa      <  1:3430252/93‑1 (MQ=255)

                                                                                    tCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAAt     <  2:4139883/93‑1 (MQ=255)

                                                                                    tCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAAt     >  1:2785882/1‑93 (MQ=255)

                                                                                       gCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTAt  <  1:3338978/93‑1 (MQ=255)

                                                                                       gCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTAt  <  1:1059905/93‑1 (MQ=255)

CTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCTCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTAT  >  NC_000913/4267868‑4268047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCTCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAGC  >  NC_000913/4267865‑4268051

CATCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCC                                                                                               >  SRR4302535.4693673/1‑94 (MQ=60)

 ATCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCC                                                                                              >  SRR4302535.2076813/1‑94 (MQ=60)

 ATCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCC                                                                                              <  SRR4302535.1754528/94‑1 (MQ=60)

 ATCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCC                                                                                              >  SRR4302535.2911132/1‑94 (MQ=60)

  TCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCT                                                                                             >  SRR4302535.2749666/1‑94 (MQ=60)

  TCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCT                                                                                             <  SRR4302535.467853/94‑1 (MQ=60)

    TGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCT                                                                                           <  SRR4302535.2232197/94‑1 (MQ=60)

     GGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTG                                                                                          <  SRR4302535.4494074/94‑1 (MQ=60)

     GGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTG                                                                                          <  SRR4302535.3570478/94‑1 (MQ=60)

     GGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTG                                                                                          <  SRR4302535.2256367/94‑1 (MQ=60)

      GTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGA                                                                                         <  SRR4302535.3651152/94‑1 (MQ=60)

       TAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGAC                                                                                        <  SRR4302535.4515886/94‑1 (MQ=60)

        AACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACA                                                                                       <  SRR4302535.2271429/94‑1 (MQ=60)

          CGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACT                                                                                     >  SRR4302535.622409/1‑94 (MQ=60)

          CGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACT                                                                                     >  SRR4302535.1359960/1‑94 (MQ=60)

          CGGATGAAATTCTGAATCAGCTGGCTGATATCCCGCGCGCTAACATCTGCTTACTGCATCTGATGCAGCAACATACCTCCTCCTCTCTGACAAT                                                                                     >  SRR4302535.4355298/1‑94 (MQ=60)

           GGTTGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTT                                                                                    >  SRR4302535.1243867/1‑94 (MQ=60)

           GGCTGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTT                                                                                    <  SRR4302535.3303429/94‑1 (MQ=60)

           GGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATCCCTCCGCCCCTCTGACACTT                                                                                    <  SRR4302535.771328/94‑1 (MQ=60)

           GGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTT                                                                                    >  SRR4302535.4258106/1‑94 (MQ=60)

           GGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTT                                                                                    >  SRR4302535.4181419/1‑94 (MQ=60)

           GGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTT                                                                                    >  SRR4302535.415146/1‑94 (MQ=60)

           GGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTT                                                                                    >  SRR4302535.4100897/1‑94 (MQ=60)

           GGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTT                                                                                    >  SRR4302535.34024/1‑94 (MQ=60)

             ATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAA                                                                                  >  SRR4302535.2749473/1‑94 (MQ=60)

              TGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAAT                                                                                 <  SRR4302535.1375333/94‑1 (MQ=60)

               GAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATG                                                                                <  SRR4302535.3512535/94‑1 (MQ=60)

                AAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGA                                                                               >  SRR4302535.875148/1‑94 (MQ=60)

                AAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGA                                                                               <  SRR4302535.4138985/94‑1 (MQ=60)

                 AATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAG                                                                              >  SRR4302535.1889949/1‑94 (MQ=60)

                   TTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAA                                                                            <  SRR4302535.4292514/94‑1 (MQ=60)

                    TCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGGGAAC                                                                           <  SRR4302535.3679512/94‑1 (MQ=60)

                    TCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAAC                                                                           <  SRR4302535.3679511/94‑1 (MQ=60)

                    TCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAAC                                                                           <  SRR4302535.2906723/94‑1 (MQ=60)

                     CTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACT                                                                          <  SRR4302535.4410709/94‑1 (MQ=60)

                     CTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACT                                                                          >  SRR4302535.905866/1‑94 (MQ=60)

                      TGAATCAGCTGGGTGATATGCCGCGCGTTAACCTCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTG                                                                         <  SRR4302535.2966026/94‑1 (MQ=60)

                      TGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTG                                                                         >  SRR4302535.2600487/1‑94 (MQ=60)

                      TGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTG                                                                         >  SRR4302535.2886570/1‑94 (MQ=60)

                      TGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTG                                                                         <  SRR4302535.925396/94‑1 (MQ=60)

                      TGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTG                                                                         <  SRR4302535.73297/94‑1 (MQ=60)

                      TGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTG                                                                         >  SRR4302535.465958/1‑94 (MQ=60)

                         ATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGA                                                                      >  SRR4302535.1881077/1‑94 (MQ=60)

                          TCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGAT                                                                     <  SRR4302535.1478012/94‑1 (MQ=60)

                           CAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACGTCCGCCCCTCTGACACTTAATGAGAACTGCGATC                                                                    >  SRR4302535.4041684/1‑94 (MQ=60)

                           CAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATC                                                                    <  SRR4302535.2137665/94‑1 (MQ=60)

                           CAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATC                                                                    <  SRR4302535.3426069/94‑1 (MQ=60)

                           CAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATC                                                                    >  SRR4302535.4625633/1‑94 (MQ=60)

                            AGCTGGCTGATATGCCTCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCC                                                                   >  SRR4302535.230551/1‑94 (MQ=60)

                            AGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCC                                                                   >  SRR4302535.4549950/1‑94 (MQ=60)

                            AGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCC                                                                   >  SRR4302535.512972/1‑94 (MQ=60)

                             GCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCC                                                                  <  SRR4302535.1729198/94‑1 (MQ=60)

                               TGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCAC                                                                <  SRR4302535.1722946/94‑1 (MQ=60)

                               TGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCAC                                                                <  SRR4302535.3067383/94‑1 (MQ=60)

                               TGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCAC                                                                >  SRR4302535.4582498/1‑94 (MQ=60)

                               TGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCAC                                                                <  SRR4302535.977630/94‑1 (MQ=60)

                                GGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACC                                                               >  SRR4302535.4132559/1‑94 (MQ=60)

                                GGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACC                                                               <  SRR4302535.2578163/94‑1 (MQ=60)

                                GGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACC                                                               >  SRR4302535.1404510/1‑94 (MQ=60)

                                GGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACC                                                               <  SRR4302535.4080223/94‑1 (MQ=60)

                                  CTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGT                                                             >  SRR4302535.501245/1‑94 (MQ=60)

                                  CTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGT                                                             >  SRR4302535.534111/1‑94 (MQ=60)

                                  CTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGT                                                             <  SRR4302535.2053270/94‑1 (MQ=60)

                                  CTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGT                                                             >  SRR4302535.1020590/1‑94 (MQ=60)

                                   TGATATGCAGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTA                                                            <  SRR4302535.1924158/94‑1 (MQ=60)

                                    GATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTAC                                                           <  SRR4302535.4193224/94‑1 (MQ=60)

                                    GATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTAC                                                           >  SRR4302535.985731/1‑94 (MQ=60)

                                    GATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTAC                                                           <  SRR4302535.172265/94‑1 (MQ=60)

                                    GATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGACAACTGCGATCCCACCGTAC                                                           >  SRR4302535.4504071/1‑94 (MQ=60)

                                     ATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACGTACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACG                                                          >  SRR4302535.4451454/1‑94 (MQ=60)

                                     ATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACG                                                          <  SRR4302535.1505007/94‑1 (MQ=60)

                                     ATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACG                                                          <  SRR4302535.4298951/94‑1 (MQ=60)

                                        TGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCA                                                       <  SRR4302535.1910234/94‑1 (MQ=60)

                                          CCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACG                                                     <  SRR4302535.3788024/94‑1 (MQ=60)

                                          CCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACG                                                     <  SRR4302535.2475458/94‑1 (MQ=60)

                                            GCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGAC                                                   <  SRR4302535.1202383/94‑1 (MQ=60)

                                              GCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACAT                                                 >  SRR4302535.2598256/1‑94 (MQ=60)

                                              GCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACAT                                                 >  SRR4302535.4111667/1‑94 (MQ=60)

                                                GTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGG                                               >  SRR4302535.2345791/1‑94 (MQ=60)

                                                GTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGG                                               >  SRR4302535.2388924/1‑94 (MQ=60)

                                                GTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGG                                               >  SRR4302535.2499095/1‑94 (MQ=60)

                                                GTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGG                                               >  SRR4302535.3883710/1‑94 (MQ=60)

                                                  TAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAG                                             >  SRR4302535.3409853/1‑94 (MQ=60)

                                                  TAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAG                                             >  SRR4302535.1451854/1‑94 (MQ=60)

                                                   AACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCGTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGC                                            >  SRR4302535.3323628/1‑94 (MQ=60)

                                                   AACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGC                                            <  SRR4302535.3480500/94‑1 (MQ=60)

                                                    ACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCG                                           >  SRR4302535.202863/1‑94 (MQ=60)

                                                    ACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCG                                           <  SRR4302535.2484033/94‑1 (MQ=60)

                                                     CATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCGCGACATGGAGCGT                                          >  SRR4302535.1837792/1‑94 (MQ=60)

                                                      ATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTT                                         >  SRR4302535.1755913/1‑94 (MQ=60)

                                                      ATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTT                                         >  SRR4302535.1993823/1‑94 (MQ=60)

                                                      ATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTT                                         >  SRR4302535.433075/1‑94 (MQ=60)

                                                      ATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTT                                         <  SRR4302535.2775247/94‑1 (MQ=60)

                                                        CGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTT                                       >  SRR4302535.1611213/1‑94 (MQ=60)

                                                         GGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTT                                      >  SRR4302535.3299423/1‑94 (MQ=60)

                                                         GGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTT                                      <  SRR4302535.1256940/94‑1 (MQ=60)

                                                           CTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTC                                    <  SRR4302535.2475309/94‑1 (MQ=60)

                                                           CTTACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTC                                    >  SRR4302535.3103823/1‑94 (MQ=60)

                                                              ACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTC                                 >  SRR4302535.1118370/1‑94 (MQ=60)

                                                              ACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTC                                 >  SRR4302535.1007758/1‑94 (MQ=60)

                                                              ACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTC                                 >  SRR4302535.4270243/1‑94 (MQ=60)

                                                              ACTGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTC                                 >  SRR4302535.1080953/1‑94 (MQ=60)

                                                                TGCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCG                               >  SRR4302535.1667454/1‑94 (MQ=60)

                                                                 GCATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGC                              <  SRR4302535.1692926/94‑1 (MQ=60)

                                                                  CATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCA                             >  SRR4302535.1403122/1‑94 (MQ=60)

                                                                  CATCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCA                             >  SRR4302535.297936/1‑94 (MQ=60)

                                                                   ATCTGTTGCTGCAACATACCTCCGCCCCTCTCACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCAC                            >  SRR4302535.1115934/1‑94 (MQ=60)

                                                                    TCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACC                           <  SRR4302535.1636455/94‑1 (MQ=60)

                                                                    TCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACC                           <  SRR4302535.3448910/94‑1 (MQ=60)

                                                                    TCTGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACAGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACG                           >  SRR4302535.3062462/1‑94 (MQ=60)

                                                                      TGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGT                         >  SRR4302535.417766/1‑94 (MQ=60)

                                                                      TGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGT                         >  SRR4302535.1080772/1‑94 (MQ=60)

                                                                      TGTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGT                         <  SRR4302535.4074541/94‑1 (MQ=60)

                                                                       TTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTT                        <  SRR4302535.765670/94‑1 (MQ=60)

                                                                       GTTGCTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTT                        <  SRR4302535.1088931/94‑1 (MQ=60)

                                                                           CTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCG                    >  SRR4302535.1878985/1‑94 (MQ=60)

                                                                           CTGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCG                    >  SRR4302535.4442275/1‑94 (MQ=60)

                                                                            TGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGA                   >  SRR4302535.580935/1‑94 (MQ=60)

                                                                            TGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGA                   >  SRR4302535.3211352/1‑94 (MQ=60)

                                                                            TGCAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGA                   >  SRR4302535.3260253/1‑94 (MQ=60)

                                                                              CAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACA                 >  SRR4302535.3528478/1‑94 (MQ=60)

                                                                              CAACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACA                 <  SRR4302535.1740953/94‑1 (MQ=60)

                                                                               AACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAA                >  SRR4302535.117202/1‑94 (MQ=60)

                                                                               AACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAA                >  SRR4302535.1169536/1‑94 (MQ=60)

                                                                                ACATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAAC               >  SRR4302535.4335387/1‑94 (MQ=60)

                                                                                 CATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACG              <  SRR4302535.2274354/94‑1 (MQ=60)

                                                                                  ATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGG             <  SRR4302535.2326162/94‑1 (MQ=60)

                                                                                  ATACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACACGGAGCGTTTTTTCATCCGCACCGTTCCCGACAACGG             >  SRR4302535.778867/1‑94 (MQ=60)

                                                                                   TACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGA            >  SRR4302535.2402113/1‑94 (MQ=60)

                                                                                    ACCTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAA           <  SRR4302535.2301258/94‑1 (MQ=60)

                                                                                      CTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAAT         >  SRR4302535.2805709/1‑94 (MQ=60)

                                                                                      CTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAAT         <  SRR4302535.1644165/94‑1 (MQ=60)

                                                                                      CTCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAAT         <  SRR4302535.3454091/94‑1 (MQ=60)

                                                                                       CCCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATT        <  SRR4302535.4206169/94‑1 (MQ=60)

                                                                                        CCGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTA       <  SRR4302535.4148284/94‑1 (MQ=60)

                                                                                         CGCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTAT      >  SRR4302535.170779/1‑94 (MQ=60)

                                                                                          GCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATG     <  SRR4302535.1067451/94‑1 (MQ=60)

                                                                                          GCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATG     >  SRR4302535.3907211/1‑94 (MQ=60)

                                                                                          GCCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATG     <  SRR4302535.3362232/94‑1 (MQ=60)

                                                                                           CCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGA    <  SRR4302535.1229880/94‑1 (MQ=60)

                                                                                           CCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGA    >  SRR4302535.300937/1‑94 (MQ=60)

                                                                                           CCCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGA    >  SRR4302535.3623692/1‑94 (MQ=60)

                                                                                            CCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAG   >  SRR4302535.2816810/1‑94 (MQ=60)

                                                                                            CCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAG   <  SRR4302535.930940/94‑1 (MQ=60)

                                                                                            CCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAG   >  SRR4302535.3747170/1‑94 (MQ=60)

                                                                                            CCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAG   >  SRR4302535.223027/1‑94 (MQ=60)

                                                                                            CCCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAG   <  SRR4302535.56999/94‑1 (MQ=60)

                                                                                            CCCTCTGACACTTAATAAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAG   >  SRR4302535.1022677/1‑94 (MQ=60)

                                                                                             CCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAGC  <  SRR4302535.3935618/94‑1 (MQ=60)

CATCTGGTAACGGATGAAATTCTGAATCAGCTGGCTGATATGCCGCGCGTTAACATCGGCTTACTGCATCTGTTGCTGCAACATACCTCCGCCTCTCTGACACTTAATGAGAACTGCGATCCCACCGTACGCCACGACATGGAGCGTTTTTTCCTCCGCACCGTTCCCGACAACGGAAATTATGAGC  >  NC_000913/4267865‑4268051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`