Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I2 R1 | 1873 | 183.1 | 9376148 | 98.2% | 9207377 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,654 | A→G | Y98H (TAC→CAC) Y98H (TAC→CAC) |
fdhF ← b4560 ← |
selenopolypeptide subunit of formate dehydrogenase H hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,654 | 0 | A | G | 95.5% | 517.3 / 9.5 | 179 | Y98H (TAC→CAC) Y98H (TAC→CAC) | fdhF b4560 | selenopolypeptide subunit of formate dehydrogenase H hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (4/4); new base G (69/102); total (73/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Only 100 of 185 total aligned reads displayed.
ACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGA > NC_000913/4296566‑4296742 | aCGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTtc > 1:3866765/1‑93 (MQ=255) cGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTtct < 2:2078167/93‑1 (MQ=255) ggCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTtctc < 1:2705295/93‑1 (MQ=255) ggCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTtctc < 1:3447706/93‑1 (MQ=255) ggCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTtctc > 2:2402285/1‑93 (MQ=255) cgcgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTg > 2:1147882/1‑93 (MQ=255) cgcgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTg < 2:748560/93‑1 (MQ=255) gcgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGa < 1:1625609/93‑1 (MQ=255) cgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGAt < 1:114897/93‑1 (MQ=255) cgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGAt < 1:1172855/93‑1 (MQ=255) cgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCATGCTTCTCTTTGAt < 2:781188/93‑1 (MQ=255) cgcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGCAGTCTGGATGGCATCCGGACCGTGGTTCTCTTGGAt > 1:1369097/1‑93 (MQ=255) gcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATg < 1:1825653/93‑1 (MQ=255) gcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATg > 1:3002458/1‑93 (MQ=255) gcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATg < 2:1931937/93‑1 (MQ=255) gcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATg < 2:1468351/93‑1 (MQ=255) gcAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATg < 1:2620793/93‑1 (MQ=255) aaaTTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGgc > 1:3954282/1‑93 (MQ=255) aaaTTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGgc < 1:921830/93‑1 (MQ=255) tttttGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCt > 1:987625/1‑93 (MQ=255) ttttGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTc > 2:3049832/1‑93 (MQ=255) tttGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCa > 1:4489065/1‑93 (MQ=255) tttGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCa < 1:3765560/93‑1 (MQ=255) tttGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCa < 1:523996/93‑1 (MQ=255) tttGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCa < 1:3632410/93‑1 (MQ=255) tcATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGgc < 1:2204048/92‑1 (MQ=255) cATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGgcg > 1:311164/1‑93 (MQ=255) tACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTc < 1:3261647/93‑1 (MQ=255) tACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTc > 2:4019147/1‑93 (MQ=255) tACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTc < 2:2546624/93‑1 (MQ=255) tACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTc > 1:3140810/1‑93 (MQ=255) cATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACAGTGCTTCTCTTTGATGGCGCTCAGGCGCTCgg > 2:482970/1‑93 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGc > 1:4485533/1‑93 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGc < 2:3702639/93‑1 (MQ=255) aTAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGc > 2:837293/1‑93 (MQ=255) tAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCa > 1:3387118/1‑93 (MQ=255) tAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCGCTTTGATGGCGCTCAGGCGCTCGGCa > 2:3796780/1‑93 (MQ=255) tAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCa < 2:3340530/93‑1 (MQ=255) aGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCaa > 2:3115040/1‑93 (MQ=255) aGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCaa < 2:4486844/93‑1 (MQ=255) gTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAAc > 2:1110902/1‑93 (MQ=255) gTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAAc > 1:4667705/1‑93 (MQ=255) gTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAAc > 2:1648566/1‑93 (MQ=255) gTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAAc < 2:498377/93‑1 (MQ=255) gTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAAc > 2:3030002/1‑93 (MQ=255) ggTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTa > 1:3787091/1‑93 (MQ=255) gTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTaa < 2:3283367/93‑1 (MQ=255) gTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTaa > 1:2924406/1‑93 (MQ=255) tttCGTTCCCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAAt < 2:1469372/93‑1 (MQ=255) tttCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAAt < 2:1871550/93‑1 (MQ=255) ttCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAAtt < 1:2529237/93‑1 (MQ=255) tCGTTCCCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTc < 2:3018205/93‑1 (MQ=255) tCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTc < 2:853609/93‑1 (MQ=255) tCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTc < 1:3678390/93‑1 (MQ=255) cGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGCCCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCa < 1:4436125/93‑1 (MQ=255) gTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAg > 1:2347663/1‑93 (MQ=255) aCCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCTGGCGATCGGCAACGTAATTCAGTGc > 1:3806888/1‑93 (MQ=255) cccGTACCCCGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGcc > 2:4580358/1‑93 (MQ=255) cGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTc > 1:1208254/1‑93 (MQ=255) gTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCa < 1:16866/93‑1 (MQ=255) gTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCa < 1:2421370/93‑1 (MQ=255) aCCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATc > 1:960357/1‑93 (MQ=255) aCCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATc < 2:2298483/93‑1 (MQ=255) aCCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATc > 1:330611/1‑93 (MQ=255) aCCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATc < 2:3891048/93‑1 (MQ=255) aCCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATc < 1:1536242/93‑1 (MQ=255) aCGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCa < 2:3906946/93‑1 (MQ=255) aCGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGCAATTCAGTGTCTCATCCCa > 2:1280822/1‑93 (MQ=255) gcgAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAgg > 1:2091789/1‑93 (MQ=255) aggagCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGaaa > 2:3350442/1‑93 (MQ=255) aggagCCGGCCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGaaa > 1:3369501/1‑93 (MQ=255) gagCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACa < 1:1415032/93‑1 (MQ=255) gagCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACa < 1:2820790/93‑1 (MQ=255) cGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGtt < 2:4112608/93‑1 (MQ=255) cGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGtt > 1:4310969/1‑93 (MQ=255) cGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGtt < 1:2208486/93‑1 (MQ=255) gtcgtcTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCg < 2:1794657/93‑1 (MQ=255) tcgtcTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGa < 2:1355091/93‑1 (MQ=255) tcgtcTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGa < 1:4148264/93‑1 (MQ=255) tcgtcTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGa > 2:3386084/1‑93 (MQ=255) tcgtcTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGa < 2:358756/93‑1 (MQ=255) tcgtcTGGATGGCATCCGGACCGTGCTGCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGa < 1:668489/93‑1 (MQ=255) tcgtcTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGa > 1:1925922/1‑93 (MQ=255) cgtcTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAg < 2:2478618/93‑1 (MQ=255) tcTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGtt < 2:2006989/93‑1 (MQ=255) tGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTg > 1:1034467/1‑93 (MQ=255) gATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTgcc < 1:2853270/93‑1 (MQ=255) gATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTgcc < 2:1471427/93‑1 (MQ=255) aTGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTgccg < 1:2001011/93‑1 (MQ=255) cATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCAc < 2:583549/93‑1 (MQ=255) tCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGc < 2:4558265/93‑1 (MQ=255) tCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGc < 1:40395/93‑1 (MQ=255) tCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGc < 1:620531/93‑1 (MQ=255) tCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGc < 2:2226869/93‑1 (MQ=255) ccGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCt < 1:399302/93‑1 (MQ=255) cGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTg < 1:4543170/93‑1 (MQ=255) ggACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTgg > 1:4196911/1‑93 (MQ=255) ggACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTgg > 1:856679/1‑93 (MQ=255) ccGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGa < 1:4324561/93‑1 (MQ=255) ccGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGa > 2:2717170/1‑93 (MQ=255) | ACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGA > NC_000913/4296566‑4296742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
CAATAACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGACGGAT > NC_000913/4296561‑4296747 | CAATAACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTG < SRR4302535.2712593/94‑1 (MQ=60)CAATAACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTG < SRR4302535.326764/94‑1 (MQ=60)CAATAACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTG < SRR4302535.3494359/94‑1 (MQ=60)CAATAACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGAGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTG > SRR4302535.548972/1‑94 (MQ=60) AACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTC > SRR4302535.3893353/1‑94 (MQ=60) GGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCT < SRR4302535.3471677/94‑1 (MQ=60) GGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCT < SRR4302535.2724627/94‑1 (MQ=60) GCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTT < SRR4302535.1164619/94‑1 (MQ=60) GCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGAT < SRR4302535.1637346/94‑1 (MQ=60) GCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGCAGTCTGGATGGCATCCGGACCGTGGTTCTCTTGGAT > SRR4302535.1378884/1‑94 (MQ=60) TGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATG > SRR4302535.3023505/1‑94 (MQ=60) CGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATG < SRR4302535.1409350/94‑1 (MQ=60) CGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATG < SRR4302535.1181228/94‑1 (MQ=60) CGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATG < SRR4302535.115703/94‑1 (MQ=60) GCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGG < SRR4302535.1838833/94‑1 (MQ=60) GCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGG < SRR4302535.2639582/94‑1 (MQ=60) CAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGC > SRR4302535.3981277/1‑94 (MQ=60) AAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCG < SRR4302535.928366/94‑1 (MQ=60) AATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGC > SRR4302535.4079890/1‑94 (MQ=60) ATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCT > SRR4302535.994641/1‑94 (MQ=60) ATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCT > SRR4302535.4476069/1‑94 (MQ=60) ATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCT < SRR4302535.13030/94‑1 (MQ=60) TTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCA > SRR4302535.4519881/1‑94 (MQ=60) TTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCA > SRR4302535.2157583/1‑94 (MQ=60) TTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAG < SRR4302535.527657/94‑1 (MQ=60) TTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAG < SRR4302535.3791567/94‑1 (MQ=60) TTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAG < SRR4302535.3657586/94‑1 (MQ=60) TTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAG < SRR4302535.666841/94‑1 (MQ=60) TCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCG < SRR4302535.2219750/94‑1 (MQ=60) GCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCG < SRR4302535.1209543/94‑1 (MQ=60) GCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCG < SRR4302535.3662508/94‑1 (MQ=60) GCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCG > SRR4302535.313319/1‑94 (MQ=60) ATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCT < SRR4302535.1883667/94‑1 (MQ=60) ATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCT < SRR4302535.4372880/94‑1 (MQ=60) ATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCT > SRR4302535.4518182/1‑94 (MQ=60) ATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCT < SRR4302535.3950878/94‑1 (MQ=60) ATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCT < SRR4302535.2470653/94‑1 (MQ=60) TTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTC > SRR4302535.3162665/1‑94 (MQ=60) TACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCG < SRR4302535.3284306/94‑1 (MQ=60) TACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCG > SRR4302535.3420539/1‑94 (MQ=60) ACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGG < SRR4302535.3394427/94‑1 (MQ=60) ACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGG > SRR4302535.3545051/1‑94 (MQ=60) CATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGC > SRR4302535.4516325/1‑94 (MQ=60) ATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCA > SRR4302535.3410687/1‑94 (MQ=60) AGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAAC > SRR4302535.4699248/1‑94 (MQ=60) GTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACG < SRR4302535.3227148/94‑1 (MQ=60) TGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTA > SRR4302535.3813216/1‑94 (MQ=60) GGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAA > SRR4302535.2945026/1‑94 (MQ=60) GGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAA > SRR4302535.3821997/1‑94 (MQ=60) GTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAAT > SRR4302535.2589537/1‑94 (MQ=60) TTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTC < SRR4302535.2547459/94‑1 (MQ=60) TCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCA < SRR4302535.3703850/94‑1 (MQ=60) CGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGCCCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAG < SRR4302535.4466528/94‑1 (MQ=60) CGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAG > SRR4302535.2364491/1‑94 (MQ=60) CGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAG > SRR4302535.208101/1‑94 (MQ=60) TTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTG < SRR4302535.2260919/94‑1 (MQ=60) TTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTG < SRR4302535.476023/94‑1 (MQ=60) TACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCTGGCGATCGGCAACGTAATTCAGTGC > SRR4302535.3833137/1‑94 (MQ=60) ACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCC < SRR4302535.2920206/94‑1 (MQ=60) CCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTTATGGCGCTCAGGCGCTCGCCTACTTATTTCAGTGCCT > SRR4302535.3140841/1‑94 (MQ=60) CCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCC > SRR4302535.4325836/1‑94 (MQ=60) CCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTC < SRR4302535.338501/94‑1 (MQ=60) CCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTC > SRR4302535.1216938/1‑94 (MQ=60) GTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCAT < SRR4302535.16992/94‑1 (MQ=60) GTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCAT < SRR4302535.2438807/94‑1 (MQ=60) TACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATC > SRR4302535.967179/1‑94 (MQ=60) TACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATC > SRR4302535.332902/1‑94 (MQ=60) ACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCC < SRR4302535.1547309/94‑1 (MQ=60) CCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCC < SRR4302535.761751/94‑1 (MQ=60) CGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGG > SRR4302535.2106862/1‑94 (MQ=60) GCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGA > SRR4302535.1802710/1‑94 (MQ=60) GAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAA > SRR4302535.3891299/1‑94 (MQ=60) GAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAA > SRR4302535.4041187/1‑94 (MQ=60) GAGGAGCCGGCCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAA > SRR4302535.3392945/1‑94 (MQ=60) GAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAG < SRR4302535.2840825/94‑1 (MQ=60) GAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAG < SRR4302535.3730621/94‑1 (MQ=60) GAGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAG < SRR4302535.1425134/94‑1 (MQ=60) GAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAG < SRR4302535.1696615/94‑1 (MQ=60) GGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGG < SRR4302535.92600/94‑1 (MQ=60) AGCCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGG < SRR4302535.4348943/94‑1 (MQ=60) CCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTT > SRR4302535.4340459/1‑94 (MQ=60) CCGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCACTGCCTCATCCCCGGAAACAGGGT > SRR4302535.990940/1‑94 (MQ=60) CGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTC < SRR4302535.2224216/94‑1 (MQ=60) CGGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTC < SRR4302535.1466418/94‑1 (MQ=60) GGTCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCG > SRR4302535.4614940/1‑94 (MQ=60) GTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGA > SRR4302535.1939805/1‑94 (MQ=60) TCGTCTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAG < SRR4302535.4176665/94‑1 (MQ=60) TCGTCTGGATGGCATCCGGACCGTGCTGCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAG < SRR4302535.673148/94‑1 (MQ=60) CTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTTAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTG > SRR4302535.3021638/1‑94 (MQ=60) CTGGATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTG > SRR4302535.1041814/1‑94 (MQ=60) GATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCG < SRR4302535.2873484/94‑1 (MQ=60) GATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCG < SRR4302535.3988075/94‑1 (MQ=60) ATGGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGC < SRR4302535.2015428/94‑1 (MQ=60) GGCATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCA > SRR4302535.2426324/1‑94 (MQ=60) CATCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACG > SRR4302535.311495/1‑94 (MQ=60) TCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCT < SRR4302535.624844/94‑1 (MQ=60) TCCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCT < SRR4302535.40702/94‑1 (MQ=60) TCCGGACCGTGCGTCTCGTTGATGGCGCTCAGGCGCTCGTCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCT < SRR4302535.2703742/94‑1 (MQ=60) CCGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTG < SRR4302535.402099/94‑1 (MQ=60) CGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGG < SRR4302535.4574243/94‑1 (MQ=60) CGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGG > SRR4302535.862716/1‑94 (MQ=60) CGGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGG > SRR4302535.4225630/1‑94 (MQ=60) GGACCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGC < SRR4302535.1983499/94‑1 (MQ=60) CCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGAC < SRR4302535.594814/94‑1 (MQ=60) CCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGAC < SRR4302535.283088/94‑1 (MQ=60) CCGTGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGAC < SRR4302535.4354140/94‑1 (MQ=60) TGCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGACGGA > SRR4302535.1078761/1‑94 (MQ=60) GCTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGACGGAT > SRR4302535.4466087/1‑94 (MQ=60) | CAATAACGGCGCGCGCAAATTTTTGCATTACATAGTTGGTTTCGTTACCCGTACCACGCGAGGAGCCGGTCGTCTGGATGGCATCCGGACCGTACTTCTCTTTGATGGCGCTCAGGCGCTCGGCAACGTAATTCAGTGCCTCATCCCAGGAAACAGGTTCGAGTTTGCCGCCACGCTGGCGACGGAT > NC_000913/4296561‑4296747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |