Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,311,496 |
+C |
coding (301/408 nt) |
phnQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,311,495 | 1 | . | C | 99.2%
| 735.5
/ ‑1.3
| 235 | coding (302/408 nt) | phnQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (132/101); total (133/102) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-01 |
Only 100 of 257 total aligned reads displayed.
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
gAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑a < 1:3996972/93‑1 (MQ=255)
aGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑c > 2:638040/1‑93 (MQ=255)
gTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑cc > 1:2786523/1‑92 (MQ=255)
tAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑ccg > 2:1981833/1‑91 (MQ=255)
tAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑ccg > 1:4064823/1‑91 (MQ=255)
aTGATTAATGTGGATAGAGTTTCTTTTTGGGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑ccgtt < 1:951649/93‑5 (MQ=255)
aTGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑ccgtt > 2:398092/1‑89 (MQ=255)
gATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTcc > 2:2225891/1‑93 (MQ=255)
tAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGc > 2:2911789/1‑93 (MQ=255)
aTGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGccc > 1:4336199/1‑93 (MQ=255)
aTGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGccc < 2:4261768/93‑1 (MQ=255)
tgtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCTGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCa > 1:2384524/1‑93 (MQ=255)
tgtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCa > 2:471893/1‑93 (MQ=255)
gtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAg < 1:1380241/93‑1 (MQ=255)
gtgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAg < 1:756140/93‑1 (MQ=255)
tgGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAgg > 2:2408302/1‑93 (MQ=255)
gATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGcc > 2:1020309/1‑93 (MQ=255)
gATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGcc > 1:1978613/1‑93 (MQ=255)
gATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGcc < 1:4093449/93‑1 (MQ=255)
aTAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCg > 1:1850322/1‑93 (MQ=255)
tAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGa > 1:333489/1‑93 (MQ=255)
tgagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCCCCCTGCTCTCGCTGTCC‑ACCGTTCCGGCCCAGGCCGat < 2:2619374/92‑1 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGata > 2:2712650/1‑93 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGata > 2:840791/1‑93 (MQ=255)
gagTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGata < 2:881408/93‑1 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtatt < 1:1047276/93‑1 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtatt < 1:975463/93‑1 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtatt > 2:4593036/1‑93 (MQ=255)
gTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtatt > 2:2762445/1‑93 (MQ=255)
ttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtattat > 1:1876955/1‑93 (MQ=255)
ttCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGAtattat < 1:3698955/93‑1 (MQ=255)
tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATc > 1:169253/1‑93 (MQ=255)
tCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATc > 2:1112909/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATcga > 1:466229/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATcga > 1:2048469/1‑93 (MQ=255)
tttttGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATcga < 1:1645132/93‑1 (MQ=255)
gAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGaca < 1:4429820/93‑1 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCGC‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt < 1:3183802/93‑1 (MQ=255)
tGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCAtt < 1:2259296/93‑1 (MQ=255)
tAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCa > 2:3237223/1‑93 (MQ=255)
aaTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCaa > 1:2557932/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAat > 1:4258797/1‑93 (MQ=255)
aTGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTCGCAat > 1:2474090/1‑93 (MQ=255)
tGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAata > 2:40971/1‑93 (MQ=255)
gAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAatat > 1:3413087/1‑93 (MQ=255)
aaCGCTTTCCTCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTc < 1:3876528/93‑1 (MQ=255)
aCGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTca < 2:3341743/93‑1 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag < 2:1165254/93‑1 (MQ=255)
cGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcag < 1:3008110/93‑1 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc < 1:683541/93‑1 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc > 2:2286353/1‑93 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc < 1:835974/93‑1 (MQ=255)
gCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagc < 1:2842582/93‑1 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag > 1:3958510/1‑93 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag > 1:1301673/1‑93 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag > 2:2125683/1‑93 (MQ=255)
tttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTcagcag < 2:3544207/93‑1 (MQ=255)
ttCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCCGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAgg > 1:2953933/1‑93 (MQ=255)
tCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGc < 2:923203/93‑1 (MQ=255)
ccGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCg > 1:1473778/1‑93 (MQ=255)
cGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGa > 1:462744/1‑93 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt < 1:2171455/93‑1 (MQ=255)
gCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGACATTATCGACGACACCATTGGCAATATTCAGCAGGCGAt > 2:3392351/1‑93 (MQ=255)
cTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCTGGCGAtt > 1:3522561/1‑93 (MQ=255)
tATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTa > 2:3195224/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa < 2:2152553/93‑1 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 2:1374370/1‑93 (MQ=255)
aTTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTaa > 1:3739453/1‑93 (MQ=255)
ttCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATg < 1:3143705/93‑1 (MQ=255)
ttCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATg < 1:235949/93‑1 (MQ=255)
ttCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCAATTAATg > 2:2353925/1‑93 (MQ=255)
tCTTTTATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGa < 1:53399/93‑1 (MQ=255)
ttttATTCCCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGCCAATATTCAGCAGGCGATTAATGACg < 1:2610791/93‑1 (MQ=255)
ttttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACg > 2:1727345/1‑93 (MQ=255)
ttttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACg > 2:4147398/1‑93 (MQ=255)
tttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGGCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGc > 1:1328199/1‑93 (MQ=255)
ttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt < 2:181087/93‑1 (MQ=255)
ttATTCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCt > 1:4026827/1‑93 (MQ=255)
ttCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat > 2:3860410/1‑93 (MQ=255)
ttCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtat > 1:1526986/1‑93 (MQ=255)
tCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtata < 1:596755/93‑1 (MQ=255)
tCACCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTtata > 2:3040136/1‑93 (MQ=255)
cccccTGCTCACGCTGTCC‑ACCGTGCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATaa < 2:4407086/91‑1 (MQ=255)
aCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc > 1:1955795/1‑93 (MQ=255)
aCCCTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAc < 1:370277/93‑1 (MQ=255)
cccTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAcc < 2:2053948/93‑1 (MQ=255)
cTGCTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCt > 1:2885529/1‑93 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 2:2567069/93‑1 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 1:3509624/93‑1 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc > 2:1453434/1‑93 (MQ=255)
cTCACGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGAc < 2:2231984/93‑1 (MQ=255)
aCGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt > 2:3748741/1‑93 (MQ=255)
aCGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGt > 1:2079761/1‑93 (MQ=255)
cGCTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCTATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTg < 1:3296593/93‑1 (MQ=255)
gCTGTCC‑ACCGTTCCGGCCCAGGCCGATATCATCGACGACACGATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTgg < 2:4537539/93‑1 (MQ=255)
cTGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTggg < 1:11445/93‑1 (MQ=255)
tGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc < 1:638040/93‑1 (MQ=255)
tGTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGc > 2:741514/1‑93 (MQ=255)
gTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCg > 1:4147960/1‑93 (MQ=255)
gTCC‑ACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCg > 2:1864654/1‑93 (MQ=255)
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑CGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > NC_000913/4311403‑4311582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
|
GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑C < SRR4302535.4024317/94‑1 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑C‑C > SRR4302535.2806352/1‑94 (MQ=60)
AGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑C‑C > SRR4302535.1240660/1‑94 (MQ=60)
GTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑Ccg > SRR4302535.4092638/1‑92 (MQ=60)
AATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTT > SRR4302535.3660325/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGGGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTC < SRR4302535.958396/94‑1 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTC > SRR4302535.3104329/1‑94 (MQ=60)
ATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTC > SRR4302535.1611050/1‑94 (MQ=60)
TGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCC > SRR4302535.4158943/1‑94 (MQ=60)
ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGG < SRR4302535.3147124/94‑1 (MQ=60)
ATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGG > SRR4302535.1527992/1‑94 (MQ=60)
TTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGC < SRR4302535.4199986/94‑1 (MQ=60)
TAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCC > SRR4302535.665072/1‑94 (MQ=60)
AATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCC > SRR4302535.4365856/1‑94 (MQ=60)
ATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCTGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCA > SRR4302535.2401648/1‑94 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGG < SRR4302535.1390085/94‑1 (MQ=60)
GTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGG < SRR4302535.761464/94‑1 (MQ=60)
TGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGC > SRR4302535.4000210/1‑94 (MQ=60)
TGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGC > SRR4302535.1160183/1‑94 (MQ=60)
GGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCC > SRR4302535.1992863/1‑94 (MQ=60)
GTTAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCG > SRR4302535.2228658/1‑94 (MQ=60)
GATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCG > SRR4302535.4133757/1‑94 (MQ=60)
GATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCG < SRR4302535.4121462/94‑1 (MQ=60)
GATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCG > SRR4302535.1863656/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGA > SRR4302535.4698983/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGA > SRR4302535.3007406/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGA > SRR4302535.3188471/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGA > SRR4302535.739262/1‑94 (MQ=60)
ATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGA > SRR4302535.335798/1‑94 (MQ=60)
TAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCTCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGAT < SRR4302535.3250884/94‑1 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATA > SRR4302535.18856/1‑94 (MQ=60)
AGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATA > SRR4302535.3956986/1‑94 (MQ=60)
GAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATAT < SRR4302535.1054943/94‑1 (MQ=60)
AGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATT < SRR4302535.4392917/94‑1 (MQ=60)
GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTA < SRR4302535.1054701/94‑1 (MQ=60)
GTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTA < SRR4302535.982387/94‑1 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTAT > SRR4302535.1890473/1‑94 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTAT > SRR4302535.1968886/1‑94 (MQ=60)
TTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTAT < SRR4302535.3472542/94‑1 (MQ=60)
TTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATC < SRR4302535.1521984/94‑1 (MQ=60)
TTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATC < SRR4302535.2831797/94‑1 (MQ=60)
TTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATC > SRR4302535.170429/1‑94 (MQ=60)
TTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATC < SRR4302535.3724578/94‑1 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGA > SRR4302535.469492/1‑94 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGA > SRR4302535.2624609/1‑94 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGA < SRR4302535.636380/94‑1 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGA > SRR4302535.736255/1‑94 (MQ=60)
CTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGA > SRR4302535.2063218/1‑94 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGAC < SRR4302535.1702847/94‑1 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGAC < SRR4302535.2091420/94‑1 (MQ=60)
TTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGAC < SRR4302535.1657023/94‑1 (MQ=60)
TTGAGGTTGGCTAATTAAACGCTTTCCGCTATTTCTTTTATTCTCCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGAC < SRR4302535.1960602/94‑1 (MQ=60)
TTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGAC < SRR4302535.3338740/94‑1 (MQ=60)
TTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGAC < SRR4302535.642314/94‑1 (MQ=60)
GAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACAC < SRR4302535.4460171/94‑1 (MQ=60)
AGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACC < SRR4302535.2545470/94‑1 (MQ=60)
GTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCAT < SRR4302535.959378/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCCGC‑C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTG < SRR4302535.3205795/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTG < SRR4302535.4037948/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTG < SRR4302535.2275382/94‑1 (MQ=60)
TGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTG > SRR4302535.2385881/1‑94 (MQ=60)
GGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGG < SRR4302535.3544602/94‑1 (MQ=60)
CTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCA > SRR4302535.4357574/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302535.2576347/1‑94 (MQ=60)
TAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAA > SRR4302535.1669775/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302535.2045980/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT < SRR4302535.3986728/94‑1 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302535.4287967/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAAT > SRR4302535.4118723/1‑94 (MQ=60)
AATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTCGCAAT > SRR4302535.2491935/1‑94 (MQ=60)
TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT > SRR4302535.3436836/1‑94 (MQ=60)
TGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATAT < SRR4302535.3727039/94‑1 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT < SRR4302535.1389524/94‑1 (MQ=60)
GAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATT < SRR4302535.2903479/94‑1 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC < SRR4302535.896771/94‑1 (MQ=60)
AAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTC > SRR4302535.2105231/1‑94 (MQ=60)
AACGCTTTCCTCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA < SRR4302535.3903154/94‑1 (MQ=60)
AACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCA < SRR4302535.2749209/94‑1 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTTCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC < SRR4302535.3299245/94‑1 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC < SRR4302535.3029179/94‑1 (MQ=60)
CGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGC > SRR4302535.337643/1‑94 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA < SRR4302535.841837/94‑1 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA < SRR4302535.2862739/94‑1 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA < SRR4302535.3848268/94‑1 (MQ=60)
GCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCA < SRR4302535.688325/94‑1 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302535.3985541/1‑94 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG < SRR4302535.3065817/94‑1 (MQ=60)
CTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAG > SRR4302535.1310971/1‑94 (MQ=60)
TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG < SRR4302535.174254/94‑1 (MQ=60)
TTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCCGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGG > SRR4302535.2974683/1‑94 (MQ=60)
TCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG > SRR4302535.1484330/1‑94 (MQ=60)
TCCGCTATTTCTTTTATTCACCCTGCTCACGCTGGCC‑ACC‑GTTCCTGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCG < SRR4302535.2270263/94‑1 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA > SRR4302535.828881/1‑94 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA > SRR4302535.465981/1‑94 (MQ=60)
CCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGA > SRR4302535.3681263/1‑94 (MQ=60)
TCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑AGC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT < SRR4302535.3733068/94‑1 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCTGGCGATT > SRR4302535.3547025/1‑94 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT > SRR4302535.1776471/1‑94 (MQ=60)
GCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATT < SRR4302535.2186996/94‑1 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302535.1556467/1‑94 (MQ=60)
CTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTA > SRR4302535.3880921/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302535.3765334/1‑94 (MQ=60)
TATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAA > SRR4302535.592304/1‑94 (MQ=60)
ATTTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAAT < SRR4302535.2062375/94‑1 (MQ=60)
TTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA < SRR4302535.237579/94‑1 (MQ=60)
TTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA < SRR4302535.2385562/94‑1 (MQ=60)
TTCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGA < SRR4302535.3165574/94‑1 (MQ=60)
TCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGAC < SRR4302535.53792/94‑1 (MQ=60)
TCTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATAAC > SRR4302535.2575749/1‑94 (MQ=60)
CTTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACG < SRR4302535.4079722/94‑1 (MQ=60)
TTTTATTCCCCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGCCAATATTCAGCAGGCGATTAATGACGC < SRR4302535.2629522/94‑1 (MQ=60)
TTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGGCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGC > SRR4302535.1337677/1‑94 (MQ=60)
TTTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGC < SRR4302535.346002/94‑1 (MQ=60)
TTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT > SRR4302535.230795/1‑94 (MQ=60)
TTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT > SRR4302535.4054377/1‑94 (MQ=60)
TTTATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCT < SRR4302535.3335635/94‑1 (MQ=60)
ATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT > SRR4302535.983629/1‑94 (MQ=60)
ATTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTAT > SRR4302535.1537988/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302535.2127075/1‑94 (MQ=60)
TTCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCAGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATA > SRR4302535.4667265/1‑94 (MQ=60)
TCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA < SRR4302535.600935/94‑1 (MQ=60)
TCACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAA < SRR4302535.4653003/94‑1 (MQ=60)
CACCCTGCTCACGCTGTCC‑ACC‑GTTCCTGCCCAGGCCGATATTATCGACGAGACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302535.568764/1‑94 (MQ=60)
CACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAAC > SRR4302535.1969874/1‑94 (MQ=60)
CCCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC < SRR4302535.87961/94‑1 (MQ=60)
ACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC > SRR4302535.1986117/1‑94 (MQ=60)
ACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC > SRR4302535.2923495/1‑94 (MQ=60)
ACCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACC < SRR4302535.372838/94‑1 (MQ=60)
CCCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCC < SRR4302535.2410366/94‑1 (MQ=60)
CCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGCTATTATCGACGACACCATTGGCAATATTCAGCAGGCGCTTAATGACGCTTCTCACCCT > SRR4302535.2847923/1‑94 (MQ=60)
CCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT < SRR4302535.1388358/94‑1 (MQ=60)
CCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302535.13259/1‑94 (MQ=60)
CCTGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCT > SRR4302535.2905943/1‑94 (MQ=60)
GGCTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGA < SRR4302535.2697678/94‑1 (MQ=60)
CTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302535.3534013/94‑1 (MQ=60)
CTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302535.4259380/94‑1 (MQ=60)
CTCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACC < SRR4302535.2949003/94‑1 (MQ=60)
TCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG < SRR4302535.1456423/94‑1 (MQ=60)
TCACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCG > SRR4302535.468099/1‑94 (MQ=60)
CACGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGT > SRR4302535.2094745/1‑94 (MQ=60)
CGCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCTATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGG < SRR4302535.3319512/94‑1 (MQ=60)
GCTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGG < SRR4302535.3731303/94‑1 (MQ=60)
CTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC > SRR4302535.4413526/1‑94 (MQ=60)
CTGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGC < SRR4302535.11534/94‑1 (MQ=60)
TGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG < SRR4302535.642500/94‑1 (MQ=60)
TGTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCG > SRR4302535.4176360/1‑94 (MQ=60)
GTCC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGA < SRR4302535.4062034/94‑1 (MQ=60)
TCC‑A‑CTGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAG < SRR4302535.1029298/94‑1 (MQ=60)
CC‑ACC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGA > SRR4302535.1468679/1‑94 (MQ=60)
C‑C‑C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT < SRR4302535.3046113/94‑1 (MQ=60)
acC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT > SRR4302535.422065/3‑94 (MQ=60)
acC‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT > SRR4302535.4083798/3‑94 (MQ=60)
acC‑GTTCCGGCCCAGGCCGATANTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACT < SRR4302535.4679027/92‑1 (MQ=60)
C‑C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTA < SRR4302535.3521937/94‑1 (MQ=60)
C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > SRR4302535.833212/1‑94 (MQ=60)
C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT < SRR4302535.3260893/94‑1 (MQ=60)
C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT < SRR4302535.3381386/94‑1 (MQ=60)
C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT < SRR4302535.1134505/94‑1 (MQ=60)
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GAGTAATGATTAATGTGGATAGAGTTTCTTTTTGAGGTTGGCTAATGAAACGCTTTCCGCTATTTCTTTTATTCACCCTGCTCACGCTGTCC‑A‑C‑GTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTAT > NC_000913/4311403‑4311589
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
