Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,356,775 |
C→T |
A279T (GCC→ACC) |
cadB ← |
transport of lysine/cadaverine |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,356,775 | 0 | C | T | 99.0%
| 684.1
/ NA
| 202 | A279T (GCC→ACC) | cadB | transport of lysine/cadaverine |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (100/99); minor base G (2/0); total (103/99) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 206 total aligned reads displayed.
CTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAG > NC_000913/4356685‑4356864
|
cTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTgg < 2:219711/93‑1 (MQ=255)
cTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTgg > 2:3828979/1‑93 (MQ=255)
ttCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGGAGTCAGGCACGCAAAGgtggtg < 1:2628267/93‑1 (MQ=255)
gggAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAAt > 2:1692027/1‑93 (MQ=255)
gAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGc < 2:574698/93‑1 (MQ=255)
aGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCTAAGGTGTTGAACGCAg > 2:3794955/1‑93 (MQ=255)
aGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAg > 1:574897/1‑93 (MQ=255)
gTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGa > 2:1355258/1‑93 (MQ=255)
ttACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGaa > 1:3747187/1‑93 (MQ=255)
ttACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGaa < 1:3222825/93‑1 (MQ=255)
ttACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTAACAACATCATCCAGTAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGaa > 2:4288288/1‑93 (MQ=255)
tACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGaaa > 1:165938/1‑93 (MQ=255)
cgtggtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCa < 1:1933294/93‑1 (MQ=255)
cgtcgtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCa > 1:1094077/1‑93 (MQ=255)
cgtcgtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCa > 2:3337426/1‑93 (MQ=255)
cgtcgtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCa < 1:1555802/93‑1 (MQ=255)
gtcgtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAg < 2:3270310/93‑1 (MQ=255)
gtcgtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAg > 2:4448636/1‑93 (MQ=255)
gtcgtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAg < 2:4270924/93‑1 (MQ=255)
tcgtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAgc < 1:4343315/93‑1 (MQ=255)
gtTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGGGGGGAATGCAGAAACCAgcgg > 2:724458/1‑93 (MQ=255)
tAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAgcggcg > 2:1224976/1‑93 (MQ=255)
aGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGgcgc < 2:1911357/93‑1 (MQ=255)
gCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCa > 2:2669002/1‑93 (MQ=255)
aCGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCATAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCa < 1:4504747/93‑1 (MQ=255)
cGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAg > 1:2372503/1‑93 (MQ=255)
gTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGt < 2:2439580/93‑1 (MQ=255)
gacccctgcctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGtt < 1:2191434/89‑1 (MQ=255)
acacCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTa > 2:3698014/1‑93 (MQ=255)
acacCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTa < 2:246413/93‑1 (MQ=255)
cacCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTAc > 1:2940571/1‑93 (MQ=255)
cctgcctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCg < 1:3278024/93‑1 (MQ=255)
ctgcctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGa < 2:4148999/93‑1 (MQ=255)
ctgcctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGa < 1:2896635/93‑1 (MQ=255)
gcctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAgg < 1:341338/93‑1 (MQ=255)
gcctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGGGGTGAATGCAGAAACCAGCGGCGCAGCCCAGCTACCGAgg > 1:804045/1‑93 (MQ=255)
cctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGa < 2:671082/93‑1 (MQ=255)
cctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGa < 1:4074286/93‑1 (MQ=255)
ctgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGAt < 1:4399768/93‑1 (MQ=255)
tgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATa < 2:2752540/93‑1 (MQ=255)
tgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATa < 1:393532/93‑1 (MQ=255)
tgGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATa > 2:2011866/1‑93 (MQ=255)
cTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTg > 2:890453/1‑93 (MQ=255)
tACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGa > 1:2832497/1‑93 (MQ=255)
aCCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGaa < 1:2472248/93‑1 (MQ=255)
cAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGc < 1:2060606/93‑1 (MQ=255)
aaCATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCa > 2:2935898/1‑93 (MQ=255)
aCATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAc > 1:3386867/1‑93 (MQ=255)
aCATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAc > 2:3545141/1‑93 (MQ=255)
aCATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAc > 2:3435614/1‑93 (MQ=255)
catcatCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACt > 1:1252054/1‑93 (MQ=255)
catcatCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACt < 2:3531085/93‑1 (MQ=255)
atcatcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTg > 1:4427918/1‑93 (MQ=255)
atcatcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTg > 2:463533/1‑93 (MQ=255)
tcatcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTgt > 2:1162274/1‑92 (MQ=255)
tcatcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGa < 1:651130/93‑1 (MQ=255)
catcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGAt < 2:3734659/93‑1 (MQ=255)
atcCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGAtt > 2:3206865/1‑93 (MQ=255)
ccAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGc < 1:2283918/93‑1 (MQ=255)
aGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCaa > 1:1780997/1‑93 (MQ=255)
aGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCaa < 2:4641177/93‑1 (MQ=255)
aGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCaa > 1:1949425/1‑93 (MQ=255)
aGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCaa < 1:528324/93‑1 (MQ=255)
ggAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCaaa < 1:2908347/93‑1 (MQ=255)
ggAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCaaa > 2:3685439/1‑93 (MQ=255)
gAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGACAGTTGAAGCACTGATTGCAAAc < 1:2145315/93‑1 (MQ=255)
cccAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGa < 2:3082214/93‑1 (MQ=255)
cccAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGa > 2:1373149/1‑93 (MQ=255)
ccAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAg > 1:1974705/1‑93 (MQ=255)
ccAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAg < 1:3357256/93‑1 (MQ=255)
cAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGc > 1:2998757/1‑93 (MQ=255)
cAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGc > 1:1195447/1‑93 (MQ=255)
cAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGc < 1:1864668/93‑1 (MQ=255)
cAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGc > 1:3621811/1‑93 (MQ=255)
cAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGc < 1:2411823/93‑1 (MQ=255)
agagAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCa > 1:2557683/1‑93 (MQ=255)
gagaAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCAc > 2:4410864/1‑93 (MQ=255)
gaAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCg < 2:1845280/93‑1 (MQ=255)
gaAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCg > 2:2101122/1‑93 (MQ=255)
gaAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCg > 1:2664416/1‑93 (MQ=255)
aGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGa > 2:3456230/1‑93 (MQ=255)
aGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGa > 2:3015933/1‑93 (MQ=255)
gTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGaa < 2:3615847/93‑1 (MQ=255)
gTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGaa > 2:1478697/1‑93 (MQ=255)
gTCAGGCACGCAAAGGTGGGGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGaa < 1:834668/93‑1 (MQ=255)
tCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAg > 2:2471044/1‑93 (MQ=255)
cAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAgc > 1:1609394/1‑93 (MQ=255)
aGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAgcc > 1:1998736/1‑93 (MQ=255)
ccGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCa < 2:763224/92‑1 (MQ=255)
cGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCAt > 2:4038496/1‑93 (MQ=255)
gCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCAtt > 1:2096612/1‑93 (MQ=255)
gCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCAtt < 1:4020162/93‑1 (MQ=255)
cAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTa > 2:399670/1‑93 (MQ=255)
aaaGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTAc > 1:3010237/1‑93 (MQ=255)
aaaGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTAc > 2:2896133/1‑93 (MQ=255)
aaaGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTAc < 2:4466735/93‑1 (MQ=255)
aaaGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTAc < 2:2161009/93‑1 (MQ=255)
aaGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACa < 2:2556119/93‑1 (MQ=255)
aaGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACa > 2:4355105/1‑93 (MQ=255)
aGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACag > 2:2492019/1‑93 (MQ=255)
|
CTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAG > NC_000913/4356685‑4356864
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGA > NC_000913/4356682‑4356868
|
AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGT < SRR4302535.419190/94‑1 (MQ=60)
AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGT > SRR4302535.4205261/1‑94 (MQ=60)
AACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTG < SRR4302535.3690724/94‑1 (MQ=60)
ACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGG > SRR4302535.2441479/1‑94 (MQ=60)
ACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGG < SRR4302535.463088/94‑1 (MQ=60)
ACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGG < SRR4302535.1816347/94‑1 (MQ=60)
CTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGT < SRR4302535.3393948/94‑1 (MQ=60)
TTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGGAGTCAGGCACGCAAAGGTGGTGA < SRR4302535.2647100/94‑1 (MQ=60)
CGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAAT < SRR4302535.1426391/94‑1 (MQ=60)
CGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAAT > SRR4302535.2677870/1‑94 (MQ=60)
GAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCA > SRR4302535.242484/1‑94 (MQ=60)
GAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCA < SRR4302535.3672344/94‑1 (MQ=60)
AAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAG > SRR4302535.578932/1‑94 (MQ=60)
AGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGA > SRR4302535.4393814/1‑94 (MQ=60)
GTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAA > SRR4302535.3773111/1‑94 (MQ=60)
GTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAA < SRR4302535.4443635/94‑1 (MQ=60)
TTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAA < SRR4302535.3245163/94‑1 (MQ=60)
TTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAA > SRR4302535.1174267/1‑94 (MQ=60)
TTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAA > SRR4302535.838311/1‑94 (MQ=60)
TTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAA > SRR4302535.167094/1‑94 (MQ=60)
CCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCA > SRR4302535.1101865/1‑94 (MQ=60)
CGTGGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAG < SRR4302535.1947218/94‑1 (MQ=60)
CGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAG < SRR4302535.3499390/94‑1 (MQ=60)
CGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAG < SRR4302535.1567017/94‑1 (MQ=60)
GTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGC < SRR4302535.3354076/94‑1 (MQ=60)
TCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCG < SRR4302535.4373019/94‑1 (MQ=60)
TTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCG < SRR4302535.3922162/94‑1 (MQ=60)
GCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAG < SRR4302535.1883864/94‑1 (MQ=60)
CGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGC < SRR4302535.2867757/94‑1 (MQ=60)
tattacgtcaacccttccgcactcgggagggttctactgttaAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCC > SRR4302535.3030496/43‑94 (MQ=60)
ACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCATAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAG < SRR4302535.4535676/94‑1 (MQ=60)
ACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAG > SRR4302535.1992189/1‑94 (MQ=60)
ACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAG > SRR4302535.2389544/1‑94 (MQ=60)
CGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGT > SRR4302535.2502594/1‑94 (MQ=60)
GTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTT > SRR4302535.4632170/1‑94 (MQ=60)
gaccCCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTA < SRR4302535.2207030/90‑1 (MQ=60)
TACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTA < SRR4302535.2178802/94‑1 (MQ=60)
TACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTA < SRR4302535.3430303/94‑1 (MQ=60)
ACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTAC > SRR4302535.2961247/1‑94 (MQ=60)
ACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCG < SRR4302535.1585981/94‑1 (MQ=60)
CCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGA < SRR4302535.3300795/94‑1 (MQ=60)
CTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAG < SRR4302535.2087356/94‑1 (MQ=60)
CTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAG < SRR4302535.2917119/94‑1 (MQ=60)
TGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGNAGTCAGGCACGCAAANGTGGTGNATGCNGANACNNNNNNCGCAGNCCAGnnnnngnng > SRR4302535.2211458/1‑85 (MQ=60)
TGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGG < SRR4302535.636430/94‑1 (MQ=60)
TGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGGGGTGAATGCAGAAACCAGCGGCGCAGCCCAGCTACCGAGG > SRR4302535.809690/1‑94 (MQ=60)
GCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGA < SRR4302535.343705/94‑1 (MQ=60)
CCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAGGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGAT < SRR4302535.2987491/94‑1 (MQ=60)
CCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGAT < SRR4302535.4102162/94‑1 (MQ=60)
CTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATA < SRR4302535.4429881/94‑1 (MQ=60)
CTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATA < SRR4302535.3986262/94‑1 (MQ=60)
TGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAG < SRR4302535.396277/94‑1 (MQ=60)
TGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAG > SRR4302535.4107270/1‑94 (MQ=60)
GGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAAGGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGT < SRR4302535.1691093/94‑1 (MQ=60)
CCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTG > SRR4302535.3466103/1‑94 (MQ=60)
CCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTG < SRR4302535.2354542/94‑1 (MQ=60)
CTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGA > SRR4302535.2852604/1‑94 (MQ=60)
ACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAG < SRR4302535.2490072/94‑1 (MQ=60)
CCAACATCATCCAGGAGCCCAGGGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTCCCGAGGATAGTTGAAGC > SRR4302535.3269070/1‑94 (MQ=60)
CCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGC > SRR4302535.1209133/1‑94 (MQ=60)
CAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCA < SRR4302535.2075455/94‑1 (MQ=60)
AACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAC > SRR4302535.3410434/1‑94 (MQ=60)
ACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACT < SRR4302535.4076478/94‑1 (MQ=60)
ACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACT > SRR4302535.1260994/1‑94 (MQ=60)
CATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTG > SRR4302535.4458249/1‑94 (MQ=60)
TCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGAT < SRR4302535.655671/94‑1 (MQ=60)
CATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATT < SRR4302535.2057229/94‑1 (MQ=60)
ATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTG < SRR4302535.2596786/94‑1 (MQ=60)
ATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAATGATTG > SRR4302535.3020255/1‑94 (MQ=60)
CCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCA < SRR4302535.2300237/94‑1 (MQ=60)
CAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAA > SRR4302535.1793885/1‑94 (MQ=60)
CAGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAA > SRR4302535.1963457/1‑94 (MQ=60)
AGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAA < SRR4302535.532015/94‑1 (MQ=60)
AGGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAA < SRR4302535.1664931/94‑1 (MQ=60)
AGGAGCCAAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCCCTGATTGCAAA < SRR4302535.995323/94‑1 (MQ=60)
GGAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAAC < SRR4302535.2928903/94‑1 (MQ=60)
GAGCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGACAGTTGAAGCACTGATTGCAAACG < SRR4302535.2160747/94‑1 (MQ=60)
GCCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGA > SRR4302535.1950023/1‑94 (MQ=60)
CCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAG < SRR4302535.2946393/94‑1 (MQ=60)
CCCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAG > SRR4302535.1988927/1‑94 (MQ=60)
CCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGC > SRR4302535.197754/1‑94 (MQ=60)
CCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGC > SRR4302535.3646915/1‑94 (MQ=60)
CCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGC > SRR4302535.1204012/1‑94 (MQ=60)
CCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGC < SRR4302535.3380628/94‑1 (MQ=60)
CCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGC > SRR4302535.3019783/1‑94 (MQ=60)
CCAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGC < SRR4302535.542150/94‑1 (MQ=60)
CAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCA > SRR4302535.4519211/1‑94 (MQ=60)
CAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCA < SRR4302535.2429184/94‑1 (MQ=60)
CAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCA < SRR4302535.1878112/94‑1 (MQ=60)
CAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCA > SRR4302535.2576098/1‑94 (MQ=60)
CAGAGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCA < SRR4302535.2251598/94‑1 (MQ=60)
GAGAAGTCAGGCACGCAAAGGGGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACC > SRR4302535.2353854/1‑94 (MQ=60)
AGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCG > SRR4302535.3233026/1‑94 (MQ=60)
AGAAGTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCG > SRR4302535.2683490/1‑94 (MQ=60)
GTCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAG < SRR4302535.2739848/94‑1 (MQ=60)
GTCAGGCACGCAAAGGTGGGGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAG < SRR4302535.840521/94‑1 (MQ=60)
TCAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGC > SRR4302535.1620999/1‑94 (MQ=60)
CAGGCACGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCC > SRR4302535.2013136/1‑94 (MQ=60)
CGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATT > SRR4302535.2111731/1‑94 (MQ=60)
CGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATT < SRR4302535.2124602/94‑1 (MQ=60)
CGCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATT < SRR4302535.1839495/94‑1 (MQ=60)
GCAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTA < SRR4302535.4047670/94‑1 (MQ=60)
CAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTAC > SRR4302535.3031321/1‑94 (MQ=60)
CAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTAC > SRR4302535.2919130/1‑94 (MQ=60)
CAAAGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTAC > SRR4302535.750481/1‑94 (MQ=60)
AGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGA > SRR4302535.593402/1‑94 (MQ=60)
AGGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGA > SRR4302535.3614520/1‑94 (MQ=60)
GGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCCCTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAA < SRR4302535.583384/94‑1 (MQ=60)
GGTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAA > SRR4302535.3881806/1‑94 (MQ=60)
GGTGGTGAAGGCAGAAACCAGCGGCGCAGCGCAGTCACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAA < SRR4302535.897915/94‑1 (MQ=60)
GTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAG > SRR4302535.1515731/1‑94 (MQ=60)
GTGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAG < SRR4302535.3133900/94‑1 (MQ=60)
TGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGA < SRR4302535.3610180/94‑1 (MQ=60)
|
AAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCACTGATTGCAAACGGAGCACCGGAAGCCGCCATTACAGAAGA > NC_000913/4356682‑4356868
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
