Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,427,095 A→G T195A (ACC→GCC)  b4207 → FKBP‑type 22KD peptidyl‑prolyl cis‑trans isomerase (rotamase)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,427,0950AG100.0% 628.0 / NA 202T195A (ACC→GCC) b4207FKBP‑type 22KD peptidyl‑prolyl cis‑trans isomerase (rotamase)
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (94/108);  total (94/108)

Only 100 of 211 total aligned reads displayed.

ATGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCACCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAATA  >  NC_000913/4427005‑4427184
                                                                                          |                                                                                         
 tGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGccc                                                                                        >  2:1412970/1‑93 (MQ=255)
 tGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGccc                                                                                        >  1:355414/1‑93 (MQ=255)
 tGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGccc                                                                                        <  2:1937953/93‑1 (MQ=255)
  gCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCt                                                                                       <  2:1121813/93‑1 (MQ=255)
  gCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCt                                                                                       <  1:2093899/93‑1 (MQ=255)
  gCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCt                                                                                       >  2:2387004/1‑93 (MQ=255)
    cGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTgg                                                                                     <  2:3746119/93‑1 (MQ=255)
    cGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTgg                                                                                     <  2:1763848/93‑1 (MQ=255)
     ggTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGgt                                                                                    >  2:2144481/1‑93 (MQ=255)
     ggTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGgt                                                                                    >  2:1443901/1‑93 (MQ=255)
      gTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGgtg                                                                                   >  1:319251/1‑93 (MQ=255)
       tAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGgtgt                                                                                  >  2:593086/1‑93 (MQ=255)
       tAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGgtgt                                                                                  >  2:2982112/1‑93 (MQ=255)
        aGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGtt                                                                                 <  1:1403115/93‑1 (MQ=255)
         ggTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGttt                                                                                <  1:1853379/93‑1 (MQ=255)
         ggTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGttt                                                                                >  2:4266121/1‑93 (MQ=255)
          gTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCACCGCCCTGGTGTTTg                                                                               >  2:920360/1‑93 (MQ=255)
           ttCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGa                                                                              >  1:2238828/1‑93 (MQ=255)
           gtCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGa                                                                              <  1:1181285/92‑1 (MQ=255)
              tAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGt                                                                           <  2:1881964/93‑1 (MQ=255)
              tAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGt                                                                           <  1:1453427/93‑1 (MQ=255)
               aaaTGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTc                                                                          >  1:2378076/1‑93 (MQ=255)
                aaTGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCg                                                                         <  1:4552759/93‑1 (MQ=255)
                aaTGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCg                                                                         >  2:1999055/1‑93 (MQ=255)
                 aTGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGa                                                                        <  1:1191992/93‑1 (MQ=255)
                 aTGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGa                                                                        >  2:189808/1‑93 (MQ=255)
                  tGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGaa                                                                       >  1:1619839/1‑93 (MQ=255)
                   gggAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAAc                                                                      <  1:2985807/93‑1 (MQ=255)
                   gggAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAAc                                                                      <  2:1104221/93‑1 (MQ=255)
                       aCTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAActgct                                                                  >  1:532886/1‑93 (MQ=255)
                       aCTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAActgct                                                                  <  1:919317/93‑1 (MQ=255)
                           aCTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGaa                                                              >  2:2775785/1‑93 (MQ=255)
                           aCTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGaa                                                              >  2:2710332/1‑93 (MQ=255)
                              aTCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATc                                                           <  1:173764/93‑1 (MQ=255)
                               tCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATcc                                                          <  1:3023863/93‑1 (MQ=255)
                                cccGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCct                                                         <  2:1080960/93‑1 (MQ=255)
                                 ccGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCctc                                                        >  1:2180383/1‑93 (MQ=255)
                                  cGCACGAACTTGCATATGGCGAGCCCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCctct                                                       <  2:1208012/93‑1 (MQ=255)
                                   gCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGACATCCTCTa                                                      >  2:732042/1‑93 (MQ=255)
                                   gCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTa                                                      >  1:2433181/1‑93 (MQ=255)
                                   gCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTa                                                      >  2:3091931/1‑93 (MQ=255)
                                      ggAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAagc                                                   >  2:3206300/1‑93 (MQ=255)
                                      ggAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAagc                                                   >  1:892492/1‑93 (MQ=255)
                                      ggAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAagc                                                   <  2:3391240/93‑1 (MQ=255)
                                       gAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAagca                                                  <  1:2407918/93‑1 (MQ=255)
                                       gAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAagca                                                  >  2:4519454/1‑93 (MQ=255)
                                       gAACTGGCATATGGCGAGCGCAGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAagca                                                  <  1:3817373/93‑1 (MQ=255)
                                           tGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAgcgc                                              >  2:2193898/1‑93 (MQ=255)
                                            ggCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCa                                             >  1:1083996/1‑93 (MQ=255)
                                            ggCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCa                                             >  1:196621/1‑93 (MQ=255)
                                            ggCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCa                                             >  1:1376476/1‑93 (MQ=255)
                                               atatGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTc                                          >  2:3182449/1‑93 (MQ=255)
                                               atatGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTc                                          >  2:1251294/1‑93 (MQ=255)
                                                tatGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCt                                         >  1:503753/1‑93 (MQ=255)
                                                  tGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGt                                       <  2:1022771/93‑1 (MQ=255)
                                                    gCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTc                                     <  2:1738835/93‑1 (MQ=255)
                                                       aGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTcccc                                  <  2:806813/93‑1 (MQ=255)
                                                       aGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTcccc                                  >  2:3233418/1‑93 (MQ=255)
                                                          gcggcgCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCg                               <  2:4340476/93‑1 (MQ=255)
                                                            ggcgcaggcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGaa                             <  2:81159/93‑1 (MQ=255)
                                                            ggcgcaggcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGaa                             <  2:286798/93‑1 (MQ=255)
                                                             gcgcaggcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAAc                            <  2:334662/93‑1 (MQ=255)
                                                             gcgcaggcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAAc                            <  2:2920774/93‑1 (MQ=255)
                                                               gcaggcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACga                          <  2:1618774/93‑1 (MQ=255)
                                                                 aggcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACgaga                        <  2:2476893/93‑1 (MQ=255)
                                                                  ggcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGagag                       >  1:4107127/1‑93 (MQ=255)
                                                                   gcgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAgg                      <  1:2683046/93‑1 (MQ=255)
                                                                    cgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAggg                     <  1:4011287/93‑1 (MQ=255)
                                                                    cgcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAggg                     <  2:1680241/93‑1 (MQ=255)
                                                                     gcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAgggg                    <  2:398452/93‑1 (MQ=255)
                                                                     gcaTCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAgggg                    >  1:4358693/1‑93 (MQ=255)
                                                                      catccatcCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGa                   >  2:2725089/1‑93 (MQ=255)
                                                                      catccatcCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGa                   <  2:4498942/93‑1 (MQ=255)
                                                                      catccatcCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGa                   <  2:4239161/93‑1 (MQ=255)
                                                                      catccatcCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGa                   <  2:488953/93‑1 (MQ=255)
                                                                      catccatcCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGa                   <  1:514780/93‑1 (MQ=255)
                                                                      catccatcCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGa                   <  2:1638044/93‑1 (MQ=255)
                                                                       atccatccCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAg                  >  2:1473328/1‑93 (MQ=255)
                                                                        tccatccCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAga                 >  1:998382/1‑92 (MQ=255)
                                                                        tccatccCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGc                 >  2:3059962/1‑93 (MQ=255)
                                                                        tccatccCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGc                 <  1:2546370/93‑1 (MQ=255)
                                                                        tccatccCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGc                 >  2:401394/1‑93 (MQ=255)
                                                                          catccCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAg               >  1:3397125/1‑93 (MQ=255)
                                                                              ccTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCAt           <  2:4650618/93‑1 (MQ=255)
                                                                              ccTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCAt           <  2:1832908/93‑1 (MQ=255)
                                                                              ccTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCAt           <  2:181415/93‑1 (MQ=255)
                                                                              ccTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCAt           >  2:4283139/1‑93 (MQ=255)
                                                                               cTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCAtt          >  1:1001717/1‑93 (MQ=255)
                                                                               cTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCAtt          <  1:1312928/93‑1 (MQ=255)
                                                                                tCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTc         <  1:1657252/93‑1 (MQ=255)
                                                                                tCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTc         <  1:2847564/93‑1 (MQ=255)
                                                                                 ccGTTCAGCGCCCTGGTGTTTGAAGTGGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGACGGTAGCAGGCATTCa        >  2:1854734/1‑93 (MQ=255)
                                                                                 ccGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCa        <  1:616801/93‑1 (MQ=255)
                                                                                 ccGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCa        <  2:1566242/93‑1 (MQ=255)
                                                                                  cGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAg       <  2:3242289/93‑1 (MQ=255)
                                                                                   gTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGc      <  2:1294924/93‑1 (MQ=255)
                                                                                     tCAGCGCCCTGGTTTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTGCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCaa    <  2:4430304/93‑1 (MQ=255)
                                                                                     tCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCaa    >  1:2650402/1‑93 (MQ=255)
                                                                                     tCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCaa    <  2:527745/93‑1 (MQ=255)
                                                                                      cAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAAt   >  2:1500457/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCACCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAATA  >  NC_000913/4427005‑4427184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGATGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCACCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAATAAACC  >  NC_000913/4427002‑4427188
                                                                                             |                                                                                             
CTGATGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCG                                                                                               >  SRR4302535.2828805/1‑94 (MQ=60)
CTGATGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCG                                                                                               <  SRR4302535.72163/94‑1 (MQ=60)
   ATGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCC                                                                                            >  SRR4302535.357865/1‑94 (MQ=60)
    TGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCT                                                                                           <  SRR4302535.3676455/94‑1 (MQ=60)
     GTCGGTAGCTACTAAATGGGACGTGACTATCCCGCAGGAACTGGCATATGCCGAGCCCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTG                                                                                          <  SRR4302535.2108603/94‑1 (MQ=60)
     GCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTG                                                                                          <  SRR4302535.2108993/94‑1 (MQ=60)
        GGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTG                                                                                       >  SRR4302535.321459/1‑94 (MQ=60)
        GGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTG                                                                                       >  SRR4302535.509872/1‑94 (MQ=60)
         GTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGT                                                                                      >  SRR4302535.2125533/1‑94 (MQ=60)
           AGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTT                                                                                    <  SRR4302535.1413124/94‑1 (MQ=60)
            GGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTG                                                                                   <  SRR4302535.1866728/94‑1 (MQ=60)
             GTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGA                                                                                  <  SRR4302535.1661305/94‑1 (MQ=60)
             GTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGA                                                                                  >  SRR4302535.2254757/1‑94 (MQ=60)
              GTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAA                                                                                 <  SRR4302535.1189719/94‑1 (MQ=60)
               TCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAG                                                                                <  SRR4302535.2404012/94‑1 (MQ=60)
                 TAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTC                                                                              >  SRR4302535.2395156/1‑94 (MQ=60)
                 TAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTC                                                                              <  SRR4302535.1463827/94‑1 (MQ=60)
                   AATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGA                                                                            <  SRR4302535.4583869/94‑1 (MQ=60)
                    ATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAA                                                                           >  SRR4302535.1631523/1‑94 (MQ=60)
                    ATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAA                                                                           <  SRR4302535.1200528/94‑1 (MQ=60)
                     TGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAAC                                                                          <  SRR4302535.24328/94‑1 (MQ=60)
                      GGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACT                                                                         <  SRR4302535.3006748/94‑1 (MQ=60)
                         AACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCT                                                                      >  SRR4302535.536616/1‑94 (MQ=60)
                          ACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTG                                                                     >  SRR4302535.2755602/1‑94 (MQ=60)
                          ACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTG                                                                     <  SRR4302535.925837/94‑1 (MQ=60)
                            TGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGA                                                                   >  SRR4302535.2292723/1‑94 (MQ=60)
                               CTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAAT                                                                >  SRR4302535.3195510/1‑94 (MQ=60)
                                 ATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCC                                                              <  SRR4302535.174963/94‑1 (MQ=60)
                                 ATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCC                                                              >  SRR4302535.119342/1‑94 (MQ=60)
                                  TCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCT                                                             <  SRR4302535.3045034/94‑1 (MQ=60)
                                   CCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTC                                                            >  SRR4302535.2195944/1‑94 (MQ=60)
                                   CCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTC                                                            >  SRR4302535.2631423/1‑94 (MQ=60)
                                    CCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTAGAACTGCTGGAAATCCTCT                                                           >  SRR4302535.4315579/1‑94 (MQ=60)
                                     CGCAGGAACTGGCATATGGCGAGCGCGGCGCCGGCGCATCCATCCATCCGTTGAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTA                                                          >  SRR4302535.782759/1‑94 (MQ=60)
                                     CGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTA                                                          >  SRR4302535.4686195/1‑94 (MQ=60)
                                     CGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTA                                                          >  SRR4302535.2450710/1‑94 (MQ=60)
                                      GCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAA                                                         <  SRR4302535.902689/94‑1 (MQ=60)
                                        AGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGC                                                       <  SRR4302535.1094070/94‑1 (MQ=60)
                                        AGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGC                                                       >  SRR4302535.596948/1‑94 (MQ=60)
                                        AGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGC                                                       >  SRR4302535.2241982/1‑94 (MQ=60)
                                        AGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGC                                                       >  SRR4302535.898815/1‑94 (MQ=60)
                                          GAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAG                                                     <  SRR4302535.2425253/94‑1 (MQ=60)
                                          GAACTGGCATATGGCGAGCGCAGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAG                                                     <  SRR4302535.3843719/94‑1 (MQ=60)
                                              TGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCA                                                 >  SRR4302535.1386305/1‑94 (MQ=60)
                                              TGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCA                                                 >  SRR4302535.1091705/1‑94 (MQ=60)
                                              TGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCA                                                 >  SRR4302535.197974/1‑94 (MQ=60)
                                                GCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATT                                               >  SRR4302535.3991849/1‑94 (MQ=60)
                                                 CATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTC                                              >  SRR4302535.1351522/1‑94 (MQ=60)
                                                 CATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTC                                              <  SRR4302535.1985905/94‑1 (MQ=60)
                                                  ATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCT                                             >  SRR4302535.4100810/1‑94 (MQ=60)
                                                  ATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCT                                             <  SRR4302535.3769/94‑1 (MQ=60)
                                                  ATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCT                                             <  SRR4302535.2516645/94‑1 (MQ=60)
                                                  ATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCT                                             >  SRR4302535.507274/1‑94 (MQ=60)
                                                   TATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTG                                            <  SRR4302535.522443/94‑1 (MQ=60)
                                                   TATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTAGAAATCCTCTAAGCAGCGCATTCTG                                            <  SRR4302535.675511/94‑1 (MQ=60)
                                                    ATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGT                                           <  SRR4302535.3033251/94‑1 (MQ=60)
                                                       GCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCC                                        >  SRR4302535.938836/1‑94 (MQ=60)
                                                        CGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCC                                       >  SRR4302535.1029282/1‑94 (MQ=60)
                                                          AGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCT                                     <  SRR4302535.1412321/94‑1 (MQ=60)
                                                           GCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTC                                    <  SRR4302535.1554537/94‑1 (MQ=60)
                                                                    AGGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAG                           >  SRR4302535.4135249/1‑94 (MQ=60)
                                                                     GGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGG                          <  SRR4302535.1685005/94‑1 (MQ=60)
                                                                     GGCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGG                          <  SRR4302535.2696042/94‑1 (MQ=60)
                                                                      GCGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGG                         <  SRR4302535.2702235/94‑1 (MQ=60)
                                                                       CGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGG                        >  SRR4302535.4388531/1‑94 (MQ=60)
                                                                       CGCATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGG                        <  SRR4302535.4038729/94‑1 (MQ=60)
                                                                         CATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAG                      <  SRR4302535.518380/94‑1 (MQ=60)
                                                                          ATCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGA                     >  SRR4302535.1005464/1‑94 (MQ=60)
                                                                           TCCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCA                    <  SRR4302535.2564696/94‑1 (MQ=60)
                                                                            CCATCCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAG                   >  SRR4302535.3420761/1‑94 (MQ=60)
                                                                                CCCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCAT               <  SRR4302535.1258709/94‑1 (MQ=60)
                                                                                 CCTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATT              >  SRR4302535.1008835/1‑94 (MQ=60)
                                                                                  CTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTC             <  SRR4302535.1322315/94‑1 (MQ=60)
                                                                                  CTCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTC             >  SRR4302535.778281/1‑94 (MQ=60)
                                                                                   TCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCA            <  SRR4302535.4439439/94‑1 (MQ=60)
                                                                                   TCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCA            <  SRR4302535.1669236/94‑1 (MQ=60)
                                                                                   TCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCA            <  SRR4302535.2867746/94‑1 (MQ=60)
                                                                                   TCCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCA            <  SRR4302535.3532233/94‑1 (MQ=60)
                                                                                    CCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAG           >  SRR4302535.1672780/1‑94 (MQ=60)
                                                                                    CCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAG           <  SRR4302535.1974495/94‑1 (MQ=60)
                                                                                    CCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAG           >  SRR4302535.2455473/1‑94 (MQ=60)
                                                                                    CCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAG           >  SRR4302535.1415040/1‑94 (MQ=60)
                                                                                    CCGTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAG           <  SRR4302535.621092/94‑1 (MQ=60)
                                                                                      GTTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCA         <  SRR4302535.1797043/94‑1 (MQ=60)
                                                                                       TTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAA        >  SRR4302535.2669378/1‑94 (MQ=60)
                                                                                       TTCAGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAA        <  SRR4302535.3399657/94‑1 (MQ=60)
                                                                                          AGCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAATAA     <  SRR4302535.2944061/94‑1 (MQ=60)
                                                                                           GCGCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAATAAA    <  SRR4302535.1651086/94‑1 (MQ=60)
                                                                                             GCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAATAAACC  >  SRR4302535.133991/1‑94 (MQ=60)
                                                                                             GCCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGAAGCGCATTCTGTTCCCCTCGAACGCGAGGGGAGCAGGCATTCAGCAATAAACC  >  SRR4302535.3516036/1‑94 (MQ=60)
                                                                                             |                                                                                             
CTGATGCCGGTAGGTTCTAAATGGGAACTGACTATCCCGCAGGAACTGGCATATGGCGAGCGCGGCGCAGGCGCATCCATCCCTCCGTTCAGCACCCTGGTGTTTGAAGTCGAACTGCTGGAAATCCTCTAAGCAGCGCATTCTGTTCCCCTCGAACGAGAGGGGAGCAGGCATTCAGCAATAAACC  >  NC_000913/4427002‑4427188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑