Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,438,341	A→G	V151A (GTG→GCG)	ytfL ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,438,341	0	A	G	100.0%	796.2 / NA	250	V151A (GTG→GCG)	ytfL	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (134/116); total (134/116)

Only 100 of 262 total aligned reads displayed.

TAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACACCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTC  >  NC_000913/4438251‑4438430

tAGATGTCCTCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGTACCACGcc                                                                                         >  2:4546051/1‑93 (MQ=255)

tAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGcc                                                                                         <  2:918876/93‑1 (MQ=255)

tAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGcc                                                                                         >  1:4151727/1‑93 (MQ=255)

tAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGcc                                                                                         >  2:236103/1‑93 (MQ=255)

 aGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCa                                                                                        >  1:3011449/1‑93 (MQ=255)

  gATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAg                                                                                       <  2:4600897/93‑1 (MQ=255)

  gATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAg                                                                                       >  1:1043042/1‑93 (MQ=255)

   aTGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGc                                                                                      >  1:3547195/1‑93 (MQ=255)

   aTGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGc                                                                                      >  1:2939288/1‑93 (MQ=255)

    tctcatcaGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCg                                                                                     >  2:1236918/3‑93 (MQ=255)

    tGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCg                                                                                     <  2:2691511/93‑1 (MQ=255)

    tGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCg                                                                                     >  1:4046468/1‑93 (MQ=255)

         tcaGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTg                                                                                >  2:1453817/1‑93 (MQ=255)

          caGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGc                                                                               >  2:707930/1‑93 (MQ=255)

            gAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCaa                                                                             >  2:2902927/1‑93 (MQ=255)

             aaGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCaaa                                                                            <  2:4286862/93‑1 (MQ=255)

              aGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAAc                                                                           >  1:810702/1‑93 (MQ=255)

                  aTGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTAc                                                                       >  2:2864798/1‑93 (MQ=255)

                  aTGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTAc                                                                       <  1:2407142/93‑1 (MQ=255)

                   tGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACa                                                                      >  1:2797213/1‑93 (MQ=255)

                   tGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACa                                                                      >  1:433192/1‑93 (MQ=255)

                   tGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACa                                                                      <  1:1440519/93‑1 (MQ=255)

                    gTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAg                                                                     >  1:1301692/1‑93 (MQ=255)

                     tCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCGAGGCCGTTGAAGACCCACGCCAGCGGGGTGCAAACGTACAgg                                                                    <  1:2520175/93‑1 (MQ=255)

                      cATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCACACGTACAGGc                                                                   >  2:1927366/1‑93 (MQ=255)

                      cATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGc                                                                   >  2:3505782/1‑93 (MQ=255)

                      cATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGc                                                                   >  1:3263316/1‑93 (MQ=255)

                       aTCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCa                                                                  <  2:1585974/93‑1 (MQ=255)

                       aTCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCa                                                                  >  1:386368/1‑93 (MQ=255)

                        tCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAg                                                                 >  2:380841/1‑93 (MQ=255)

                        tCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAg                                                                 >  1:613156/1‑93 (MQ=255)

                         cTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGa                                                                >  2:1058219/1‑93 (MQ=255)

                          tttACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGaa                                                               <  2:3579547/93‑1 (MQ=255)

                          tttACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGaa                                                               >  1:1402511/1‑93 (MQ=255)

                           ttACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAg                                                              >  2:2066005/1‑93 (MQ=255)

                            tACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAgc                                                             <  1:3606943/93‑1 (MQ=255)

                            tACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAgc                                                             <  1:4212513/93‑1 (MQ=255)

                               gTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCa                                                          <  2:3985018/93‑1 (MQ=255)

                               gTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCa                                                          >  1:1323210/1‑93 (MQ=255)

                               gTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACATACAGGCAGAAGCGCa                                                          <  2:1163862/93‑1 (MQ=255)

                                tACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCAt                                                         >  1:3174041/1‑93 (MQ=255)

                                tACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCAt                                                         <  1:1539865/93‑1 (MQ=255)

                                 aCCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATc                                                        <  2:3000541/93‑1 (MQ=255)

                                 aCCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATc                                                        <  2:1578485/93‑1 (MQ=255)

                                 aCCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATc                                                        >  1:3204055/1‑93 (MQ=255)

                                 aCCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATc                                                        <  1:3831722/93‑1 (MQ=255)

                                  ccATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATca                                                       >  2:1203592/1‑92 (MQ=255)

                                   cATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCgg                                                      <  1:4071278/93‑1 (MQ=255)

                                   cATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCgg                                                      >  1:4004074/1‑93 (MQ=255)

                                   cATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCgg                                                      >  1:1604138/1‑93 (MQ=255)

                                   cATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCgg                                                      >  2:2569578/1‑93 (MQ=255)

                                    aTTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCggg                                                     <  1:2752993/93‑1 (MQ=255)

                                    aTTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCggg                                                     >  1:4400364/1‑93 (MQ=255)

                                      tGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGtt                                                   >  2:1768249/1‑93 (MQ=255)

                                        gCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTtga                                                 <  1:770285/93‑1 (MQ=255)

                                        gCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGGtga                                                 >  1:2072712/1‑93 (MQ=255)

                                          aGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTtgatg                                               >  1:2287660/1‑93 (MQ=255)

                                            tttGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTgatgat                                             >  1:2696650/1‑93 (MQ=255)

                                            tttGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTgatgat                                             >  1:2913183/1‑93 (MQ=255)

                                             ttGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATa                                            <  1:3707415/93‑1 (MQ=255)

                                               gAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACg                                          >  1:3573594/1‑93 (MQ=255)

                                               gAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACg                                          >  2:3366018/1‑93 (MQ=255)

                                                aaaaTACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGc                                         >  2:781225/1‑93 (MQ=255)

                                                   aTACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCaaa                                      <  2:4246727/93‑1 (MQ=255)

                                                   aTACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCaaa                                      >  2:4355812/1‑93 (MQ=255)

                                                    tACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAg                                     >  2:1668491/1‑93 (MQ=255)

                                                    tACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAg                                     <  1:3454917/93‑1 (MQ=255)

                                                    tACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAg                                     >  2:1701734/1‑93 (MQ=255)

                                                     aCGGAAGATTATGTTCGCCAGTCCGTTGAAGACCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGAGGATACGCAAAGc                                    <  2:2899670/93‑1 (MQ=255)

                                                     aCGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGc                                    >  1:4206110/1‑93 (MQ=255)

                                                       ggAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCca                                  <  1:751372/93‑1 (MQ=255)

                                                       ggAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCca                                  <  1:985802/93‑1 (MQ=255)

                                                        gAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTTCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCcac                                 >  1:3043848/1‑93 (MQ=255)

                                                        gAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCcac                                 <  1:427910/93‑1 (MQ=255)

                                                        gAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCcac                                 >  1:2976482/1‑93 (MQ=255)

                                                        gAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCcac                                 >  2:1522081/1‑93 (MQ=255)

                                                          aGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAg                               >  2:1415035/1‑93 (MQ=255)

                                                          aGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAg                               >  1:1093847/1‑93 (MQ=255)

                                                          aGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAg                               >  1:4634954/1‑93 (MQ=255)

                                                           gATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGc                              >  2:4101478/1‑93 (MQ=255)

                                                            aTTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCt                             <  1:498966/93‑1 (MQ=255)

                                                             ttATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCtt                            >  1:2890920/1‑93 (MQ=255)

                                                                tGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTg                         <  1:637336/93‑1 (MQ=255)

                                                                 gTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTgg                        <  2:3334036/93‑1 (MQ=255)

                                                                 gTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTgg                        >  2:2444614/1‑93 (MQ=255)

                                                                     gCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCa                    >  1:2145092/1‑93 (MQ=255)

                                                                        aGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATc                 <  2:2830468/93‑1 (MQ=255)

                                                                        aGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATc                 <  1:2421506/93‑1 (MQ=255)

                                                                         ggCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCa                >  2:3232445/1‑93 (MQ=255)

                                                                         ggCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCa                <  1:2054429/93‑1 (MQ=255)

                                                                          gCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCAt               >  2:557708/1‑93 (MQ=255)

                                                                              ttGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCg           >  1:2027920/1‑93 (MQ=255)

                                                                              ttGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCg           >  2:4453781/1‑93 (MQ=255)

                                                                               tGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGa          <  1:1788177/93‑1 (MQ=255)

                                                                                gaagaaCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGAt         >  2:2205141/1‑93 (MQ=255)

                                                                                gaagaaCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGAt         <  1:3722128/93‑1 (MQ=255)

                                                                                 aagaaCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATg        >  2:2878748/1‑93 (MQ=255)

                                                                                 aagaaCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATg        <  1:561424/93‑1 (MQ=255)

                                                                                 aagaaCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATg        >  1:1738704/1‑93 (MQ=255)

                                                                                  agaaCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGc       >  2:3754746/1‑93 (MQ=255)

TAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACACCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTC  >  NC_000913/4438251‑4438430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACACCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTCGGGG  >  NC_000913/4438250‑4438434

GTAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCC                                                                                             >  SRR4302535.4180154/1‑94 (MQ=60)

 TAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCA                                                                                            >  SRR4302535.3032547/1‑94 (MQ=60)

 TAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCA                                                                                            <  SRR4302535.144019/94‑1 (MQ=60)

  AGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAG                                                                                           >  SRR4302535.1050436/1‑94 (MQ=60)

  AGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAG                                                                                           >  SRR4302535.4323668/1‑94 (MQ=60)

  AGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAG                                                                                           >  SRR4302535.791383/1‑94 (MQ=60)

   GATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGC                                                                                          >  SRR4302535.2959961/1‑94 (MQ=60)

   GATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGC                                                                                          >  SRR4302535.3571822/1‑94 (MQ=60)

    ATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAATATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCG                                                                                         <  SRR4302535.3772463/94‑1 (MQ=60)

    ATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCG                                                                                         >  SRR4302535.3675073/1‑94 (MQ=60)

    ATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCG                                                                                         >  SRR4302535.2512957/1‑94 (MQ=60)

    ATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCG                                                                                         >  SRR4302535.718511/1‑94 (MQ=60)

    ATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCG                                                                                         >  SRR4302535.4074167/1‑94 (MQ=60)

     TGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGG                                                                                        <  SRR4302535.1152459/94‑1 (MQ=60)

      GTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGG                                                                                       >  SRR4302535.2995749/1‑94 (MQ=60)

        CATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGT                                                                                     <  SRR4302535.4629631/94‑1 (MQ=60)

            AGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCAAGCCAGCGGGGTGCAA                                                                                 >  SRR4302535.4092591/1‑94 (MQ=60)

              AAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAAC                                                                               >  SRR4302535.3664456/1‑94 (MQ=60)

              AAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAAC                                                                               >  SRR4302535.816370/1‑94 (MQ=60)

               AGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACG                                                                              >  SRR4302535.407061/1‑94 (MQ=60)

                 TGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTA                                                                            >  SRR4302535.2932415/1‑94 (MQ=60)

                   ATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACA                                                                          >  SRR4302535.2817118/1‑94 (MQ=60)

                   ATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACA                                                                          <  SRR4302535.2424470/94‑1 (MQ=60)

                   ATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACA                                                                          >  SRR4302535.436210/1‑94 (MQ=60)

                    TGTCATCTTTACGTACCATTGGCAGTTTGAAAATGCGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAG                                                                         <  SRR4302535.2488291/94‑1 (MQ=60)

                    TGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAG                                                                         >  SRR4302535.1310990/1‑94 (MQ=60)

                    TGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAG                                                                         <  SRR4302535.1450822/94‑1 (MQ=60)

                    TGTCATCTTTACGTACCAATGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAG                                                                         <  SRR4302535.3889692/94‑1 (MQ=60)

                     TTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGG                                                                        <  SRR4302535.1395865/94‑1 (MQ=60)

                      TCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCGAGGCCGTTGAAGACCCACGCCAGCGGGGTGCAAACGTACAGGC                                                                       <  SRR4302535.2538337/94‑1 (MQ=60)

                      TCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGC                                                                       >  SRR4302535.3285981/1‑94 (MQ=60)

                      TCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGC                                                                       <  SRR4302535.4236567/94‑1 (MQ=60)

                       CATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCA                                                                      <  SRR4302535.760322/94‑1 (MQ=60)

                       CATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCA                                                                      >  SRR4302535.389054/1‑94 (MQ=60)

                       CATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCA                                                                      >  SRR4302535.575868/1‑94 (MQ=60)

                        ATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAG                                                                     <  SRR4302535.1524858/94‑1 (MQ=60)

                        ATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAG                                                                     >  SRR4302535.617420/1‑94 (MQ=60)

                          CTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAAGCACGCCAGCGGGGCGCAAACGTACAGGCAGAA                                                                   >  SRR4302535.2103210/1‑94 (MQ=60)

                          CTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAA                                                                   >  SRR4302535.3590166/1‑94 (MQ=60)

                          CTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAA                                                                   >  SRR4302535.1412518/1‑94 (MQ=60)

                           TTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAG                                                                  <  SRR4302535.2948718/94‑1 (MQ=60)

                             TACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCG                                                                <  SRR4302535.3631963/94‑1 (MQ=60)

                             TACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCG                                                                <  SRR4302535.4241343/94‑1 (MQ=60)

                             TACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCG                                                                <  SRR4302535.2430506/94‑1 (MQ=60)

                              ACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGC                                                               <  SRR4302535.969329/94‑1 (MQ=60)

                              ACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGC                                                               >  SRR4302535.180023/1‑94 (MQ=60)

                               CGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGACCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCA                                                              <  SRR4302535.6330/94‑1 (MQ=60)

                               CGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCA                                                              >  SRR4302535.3773374/1‑94 (MQ=60)

                               CGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCA                                                              <  SRR4302535.585621/94‑1 (MQ=60)

                               CGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCA                                                              >  SRR4302535.1332653/1‑94 (MQ=60)

                               CGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCA                                                              >  SRR4302535.2759852/1‑94 (MQ=60)

                               CGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCA                                                              <  SRR4302535.804321/94‑1 (MQ=60)

                                GTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCAT                                                             >  SRR4302535.3196009/1‑94 (MQ=60)

                                GTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCAT                                                             <  SRR4302535.4189485/94‑1 (MQ=60)

                                 TACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATC                                                            <  SRR4302535.3111792/94‑1 (MQ=60)

                                 TACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATC                                                            <  SRR4302535.1550968/94‑1 (MQ=60)

                                 TACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATC                                                            >  SRR4302535.3226245/1‑94 (MQ=60)

                                  ACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCG                                                           <  SRR4302535.713704/94‑1 (MQ=60)

                                  ACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCG                                                           <  SRR4302535.3858144/94‑1 (MQ=60)

                                  ACCATGGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCG                                                           <  SRR4302535.2079923/94‑1 (MQ=60)

                                   CCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGG                                                          >  SRR4302535.165478/1‑94 (MQ=60)

                                   CCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGG                                                          >  SRR4302535.1615709/1‑94 (MQ=60)

                                   CCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGG                                                          >  SRR4302535.4031467/1‑94 (MQ=60)

                                    CATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGG                                                         >  SRR4302535.4430479/1‑94 (MQ=60)

                                    CATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGG                                                         <  SRR4302535.4099139/94‑1 (MQ=60)

                                     ATTGGCAGTTTGAAAATACGGAAGATTATGTTCGTCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGT                                                        >  SRR4302535.4404226/1‑94 (MQ=60)

                                     ATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGT                                                        >  SRR4302535.3211578/1‑94 (MQ=60)

                                     ATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGT                                                        <  SRR4302535.2772612/94‑1 (MQ=60)

                                      TTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTT                                                       >  SRR4302535.3570553/1‑94 (MQ=60)

                                      TTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTT                                                       <  SRR4302535.1586123/94‑1 (MQ=60)

                                       TGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTG                                                      <  SRR4302535.1081739/94‑1 (MQ=60)

                                        GGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGGTGA                                                     >  SRR4302535.2087645/1‑94 (MQ=60)

                                         GCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGAT                                                    <  SRR4302535.3054964/94‑1 (MQ=60)

                                         GCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGAT                                                    <  SRR4302535.775706/94‑1 (MQ=60)

                                          CAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATG                                                   >  SRR4302535.2304001/1‑94 (MQ=60)

                                          CAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATG                                                   >  SRR4302535.16037/1‑94 (MQ=60)

                                            GTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGAT                                                 >  SRR4302535.2715926/1‑94 (MQ=60)

                                            GTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGAT                                                 <  SRR4302535.323602/94‑1 (MQ=60)

                                            GTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGAT                                                 >  SRR4302535.2933762/1‑94 (MQ=60)

                                              TTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATAC                                               <  SRR4302535.4619309/94‑1 (MQ=60)

                                              TTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATAC                                               <  SRR4302535.3733085/94‑1 (MQ=60)

                                               TGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACG                                              >  SRR4302535.3598372/1‑94 (MQ=60)

                                               TGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACG                                              >  SRR4302535.3940065/1‑94 (MQ=60)

                                                   AATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAA                                          >  SRR4302535.2134791/1‑94 (MQ=60)

                                                   AATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAA                                          >  SRR4302535.3046597/1‑94 (MQ=60)

                                                   AATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAA                                          >  SRR4302535.3747623/1‑94 (MQ=60)

                                                    ATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAG                                         <  SRR4302535.3555219/94‑1 (MQ=60)

                                                    ATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAG                                         >  SRR4302535.207993/1‑94 (MQ=60)

                                                    ATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAG                                         <  SRR4302535.860537/94‑1 (MQ=60)

                                                     TACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGC                                        <  SRR4302535.3478933/94‑1 (MQ=60)

                                                     TACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGC                                        >  SRR4302535.4234893/1‑94 (MQ=60)

                                                      ACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCC                                       <  SRR4302535.2802788/94‑1 (MQ=60)

                                                      ACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCC                                       <  SRR4302535.3203312/94‑1 (MQ=60)

                                                       CGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCATACGTACAGGCAGAAGCGCATCGGGCTGATGATACGCAAAGCCA                                      >  SRR4302535.2833645/1‑94 (MQ=60)

                                                        GGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTTCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCAC                                     >  SRR4302535.3065171/1‑94 (MQ=60)

                                                        GGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCAC                                     <  SRR4302535.4412308/94‑1 (MQ=60)

                                                        GGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCAC                                     <  SRR4302535.756664/94‑1 (MQ=60)

                                                        GGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCAC                                     <  SRR4302535.992806/94‑1 (MQ=60)

                                                        GGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCAC                                     >  SRR4302535.2997366/1‑94 (MQ=60)

                                                         GAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACA                                    >  SRR4302535.192100/1‑94 (MQ=60)

                                                         GAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACA                                    >  SRR4302535.1442566/1‑94 (MQ=60)

                                                         GAAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACA                                    <  SRR4302535.430887/94‑1 (MQ=60)

                                                          AAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAG                                   >  SRR4302535.1101635/1‑94 (MQ=60)

                                                          AAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAG                                   >  SRR4302535.4666392/1‑94 (MQ=60)

                                                          AAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAG                                   <  SRR4302535.4703864/94‑1 (MQ=60)

                                                          AAGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAG                                   <  SRR4302535.4216943/94‑1 (MQ=60)

                                                           AGATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGC                                  >  SRR4302535.361170/1‑94 (MQ=60)

                                                            GATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCT                                 >  SRR4302535.2389913/1‑94 (MQ=60)

                                                            GATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCT                                 <  SRR4302535.2176809/94‑1 (MQ=60)

                                                             ATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTT                                <  SRR4302535.502465/94‑1 (MQ=60)

                                                             ATTATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTT                                >  SRR4302535.2911372/1‑94 (MQ=60)

                                                               TATGTTCGCCAGTCCGTTGAAGATCCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCT                              <  SRR4302535.3024493/94‑1 (MQ=60)

                                                               TATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCT                              <  SRR4302535.1756666/94‑1 (MQ=60)

                                                               TATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCT                              >  SRR4302535.2055578/1‑94 (MQ=60)

                                                                ATGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTG                             >  SRR4302535.2599725/1‑94 (MQ=60)

                                                                 TGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGG                            <  SRR4302535.2709259/94‑1 (MQ=60)

                                                                 TGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGG                            <  SRR4302535.2875972/94‑1 (MQ=60)

                                                                 TGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGG                            <  SRR4302535.641787/94‑1 (MQ=60)

                                                                 TGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGAGCATCGGGGTGATGATACGCAAAGCCACAGCTTCTGG                            >  SRR4302535.4186131/1‑94 (MQ=60)

                                                                 TGTTCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGGGCAAACGTACAGGCAGAAGGGCATCGGGTTGATGATACGCAAAGCCACAGCTTTTGG                            >  SRR4302535.1288707/1‑94 (MQ=60)

                                                                    TCGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGC                         >  SRR4302535.2323466/1‑94 (MQ=60)

                                                                     CGCCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCA                        >  SRR4302535.2160524/1‑94 (MQ=60)

                                                                       CCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAAT                      >  SRR4302535.3917398/1‑94 (MQ=60)

                                                                       CCAGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAAT                      >  SRR4302535.4171220/1‑94 (MQ=60)

                                                                         AGGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCA                    <  SRR4302535.2438945/94‑1 (MQ=60)

                                                                          GGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCAT                   <  SRR4302535.2069228/94‑1 (MQ=60)

                                                                          GGCCGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCAT                   <  SRR4302535.1313138/94‑1 (MQ=60)

                                                                             CGTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACC                <  SRR4302535.508257/94‑1 (MQ=60)

                                                                              GTTGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCG               >  SRR4302535.2042538/1‑94 (MQ=60)

                                                                              GTTGAAGAACCACGCCAGCGGGGGGCAAACGTACAGGCAGAAGCGCATCGGGGTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCG               >  SRR4302535.2799623/1‑94 (MQ=60)

                                                                                TGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGAT             <  SRR4302535.513994/94‑1 (MQ=60)

                                                                                TGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGAT             <  SRR4302535.1801114/94‑1 (MQ=60)

                                                                                TGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGAT             <  SRR4302535.1985446/94‑1 (MQ=60)

                                                                                TGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGAT             <  SRR4302535.302220/94‑1 (MQ=60)

                                                                                TGAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGAT             <  SRR4302535.3294709/94‑1 (MQ=60)

                                                                                 GAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATG            <  SRR4302535.3625269/94‑1 (MQ=60)

                                                                                 GAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATG            >  SRR4302535.1751270/1‑94 (MQ=60)

                                                                                 GAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATG            <  SRR4302535.3747914/94‑1 (MQ=60)

                                                                                 GAAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATG            >  SRR4302535.3452587/1‑94 (MQ=60)

                                                                                  AAGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGC           <  SRR4302535.565349/94‑1 (MQ=60)

                                                                                   AGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCG          <  SRR4302535.2938157/94‑1 (MQ=60)

                                                                                   AGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCG          <  SRR4302535.4071472/94‑1 (MQ=60)

                                                                                   AGAACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCG          <  SRR4302535.4254467/94‑1 (MQ=60)

                                                                                     AACCACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTT        >  SRR4302535.4262627/1‑94 (MQ=60)

                                                                                        CACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTCG     >  SRR4302535.4471086/1‑94 (MQ=60)

                                                                                        CACGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTCG     <  SRR4302535.140000/94‑1 (MQ=60)

                                                                                          CGCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTCGGG   <  SRR4302535.1236115/94‑1 (MQ=60)

                                                                                           GCCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTCGGGG  <  SRR4302535.3184920/94‑1 (MQ=60)

GTAGATGTCATCAGAAGTGATGTCATCTTTACGTACCATTGGCAGTTTGAAAATACGGAAGATTATGTTCGCCAGGCCGTTGAAGAACCACACCAGCGGGGTGCAAACGTACAGGCAGAAGCGCATCGGGTTGATGATACGCAAAGCCACAGCTTCTGGCGCAATCATACCGATGCGTTTCGGGG  >  NC_000913/4438250‑4438434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`