Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,478,527 |
Δ1 bp |
intergenic (+36/+23) |
yjgN → / ← valS |
hypothetical protein/valine tRNA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,478,527 | 0 | G | . | 99.4%
| 770.8
/ ‑2.7
| 170 | intergenic (+36/+23) | yjgN/valS | hypothetical protein/valine tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base . (95/74); minor base T (0/1); total (95/75) |
| Fisher's exact test for biased strand distribution p-value = 4.41e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.05e-01 |
Only 100 of 180 total aligned reads displayed.
AGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCCGGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCA > NC_000913/4478437‑4478614
|
aGGCTTCTTAGCCAGTATTTCACGGTGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGttt < 1:4632361/93‑1 (MQ=255)
ggCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGtttt > 2:4323331/1‑93 (MQ=255)
gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGGCGGA‑GCATGGTCCGGGCTTCGGtttc > 2:57924/1‑92 (MQ=255)
cttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtca < 1:440560/93‑1 (MQ=255)
ttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcat > 2:1985387/1‑93 (MQ=255)
ttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcat > 1:3932266/1‑93 (MQ=255)
ttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcat < 1:3673916/93‑1 (MQ=255)
tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatc > 1:1069322/1‑93 (MQ=255)
tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatc > 1:3879050/1‑93 (MQ=255)
tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATATCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatc > 1:3304912/1‑93 (MQ=255)
cttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatca > 1:4189104/1‑93 (MQ=255)
cttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTtcatca < 1:2381085/93‑1 (MQ=255)
ttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCAc < 2:667222/93‑1 (MQ=255)
ttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCAc > 1:2193886/1‑93 (MQ=255)
aGCCAGTATTTCACGGGGAGTTATGCCTTCTTTCCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtg < 1:3259609/93‑1 (MQ=255)
aGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtg < 1:702166/93‑1 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt < 1:159191/93‑1 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt > 1:3803292/1‑93 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt > 1:491970/1‑93 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt > 2:1419755/1‑93 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt < 2:3405717/93‑1 (MQ=255)
gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgt > 1:2933758/1‑93 (MQ=255)
gcAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgtg < 2:332871/92‑1 (MQ=255)
ccAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACtgtg < 2:1615833/93‑1 (MQ=255)
cAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCAGGA‑GCATGCTCCGGGCCT‑CGTTTTCATCACTgtgt > 1:2149751/1‑93 (MQ=255)
gTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGttt > 1:1852107/1‑93 (MQ=255)
gTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGttt > 2:947024/1‑93 (MQ=255)
tATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGtttt > 2:2521434/1‑93 (MQ=255)
tATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGtttt > 2:1112675/1‑93 (MQ=255)
tATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGtttt > 1:81731/1‑93 (MQ=255)
aTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTg > 1:4274836/1‑93 (MQ=255)
cACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTa < 1:3640379/93‑1 (MQ=255)
aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTAc > 1:3141708/1‑93 (MQ=255)
aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTAc < 2:867238/93‑1 (MQ=255)
cGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACa < 1:2771805/93‑1 (MQ=255)
cGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACa < 2:3483714/93‑1 (MQ=255)
cGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACa < 1:461639/93‑1 (MQ=255)
gggAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAgc > 1:2324861/1‑93 (MQ=255)
gggAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAgc < 2:2396714/93‑1 (MQ=255)
gTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGGCGGA‑GCATGCTCCGGCCTT‑CGTTTTTATTACTGTGTTTTTTTTTCAGCgcgg > 2:1779273/1‑93 (MQ=255)
gTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCgcgg > 1:3500262/1‑93 (MQ=255)
tATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCgcggcg > 2:2904347/1‑93 (MQ=255)
aTGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa < 2:721000/93‑1 (MQ=255)
aTGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa < 2:1847081/93‑1 (MQ=255)
tGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGAt > 2:1390295/1‑93 (MQ=255)
gCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATa > 1:4663306/1‑93 (MQ=255)
ccTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATaa < 1:4160235/93‑1 (MQ=255)
ccTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATaa > 1:2291236/1‑93 (MQ=255)
ccTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGG‑CTTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATaa < 2:3765809/93‑1 (MQ=255)
cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCCGG‑‑GGATGCTCCCGCCTTCCGTTTTC‑TTACTGTGGTTTTATTTTAGCGCGGGGATaaa > 1:51177/1‑92 (MQ=255)
cttcttTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAAc < 1:3138939/93‑1 (MQ=255)
ttcttTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACa < 2:4242615/93‑1 (MQ=255)
tttACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGcc < 1:4340151/93‑1 (MQ=255)
ttACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCct < 2:4392367/93‑1 (MQ=255)
ttACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCct < 2:3605205/93‑1 (MQ=255)
aCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgc > 1:3457271/1‑93 (MQ=255)
ccATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgct < 1:2616832/93‑1 (MQ=255)
cATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgctg < 1:1227257/93‑1 (MQ=255)
cATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgctg < 2:3612303/93‑1 (MQ=255)
aTTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGt > 1:1554290/1‑93 (MQ=255)
aTTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGt < 2:4038368/93‑1 (MQ=255)
aTTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGt > 2:1265853/1‑93 (MQ=255)
ttCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTc < 1:4060483/93‑1 (MQ=255)
tCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCa < 2:2642774/93‑1 (MQ=255)
tGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTCCAGCGCGGCGATAACAGCCTGCTGTTCAAt > 2:472711/1‑93 (MQ=255)
tGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAAt < 1:1462589/93‑1 (MQ=255)
gTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATc < 1:3496982/93‑1 (MQ=255)
tAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCa > 1:1129550/1‑93 (MQ=255)
tAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCa < 1:2708537/93‑1 (MQ=255)
agagAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGt > 1:1050169/1‑93 (MQ=255)
agagAT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGt < 2:834421/93‑1 (MQ=255)
gagaT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTTAATCAGtt > 1:901306/1‑93 (MQ=255)
gagaT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtt > 2:1447300/1‑93 (MQ=255)
gagaT‑AAAAAAGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtt > 1:2861941/1‑93 (MQ=255)
gataaaaaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGCTAACAGCCTGCTGTTCAATCAGtttc > 1:1687795/4‑93 (MQ=255)
gataaaaaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttc > 2:4557418/4‑93 (MQ=255)
gataaaaaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttc > 2:1145334/4‑93 (MQ=255)
taaaaaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttcgc < 2:3021512/92‑1 (MQ=255)
taaaaaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttcgc < 2:447789/92‑1 (MQ=255)
aaaaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttcgctt < 1:135832/93‑1 (MQ=255)
aaaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttcgcttt > 1:1360154/1‑93 (MQ=255)
aaaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttcgctttc > 2:384078/1‑93 (MQ=255)
aaGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttcgctttcg > 1:3509558/1‑93 (MQ=255)
aGGCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAACGCGGCGATAACAGGCTGCTGTTTTATCAGtttcgctttcgc > 2:4080140/1‑93 (MQ=255)
ggCCGGA‑GCATGCTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTttcgctttcgct > 2:4119129/1‑93 (MQ=255)
cggagcatgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTcc < 2:2767284/89‑1 (MQ=255)
ggagcatgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCg > 1:3085232/4‑93 (MQ=255)
ggagcatgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCg > 2:2333165/4‑93 (MQ=255)
ggagcatgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCg > 1:1193873/4‑93 (MQ=255)
ggagcatgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCg > 2:736862/4‑93 (MQ=255)
agcatgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGcc > 1:1782057/2‑92 (MQ=255)
catgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATa > 1:1695539/1‑93 (MQ=255)
catgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATa < 2:1579497/93‑1 (MQ=255)
tgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGc < 1:937883/93‑1 (MQ=255)
tgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGc > 2:1685583/1‑93 (MQ=255)
tgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGc > 2:3137531/1‑93 (MQ=255)
tgcTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGc > 1:3612292/1‑93 (MQ=255)
cTCCGGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCt < 2:2161344/93‑1 (MQ=255)
ggCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCa > 1:876562/1‑93 (MQ=255)
ggCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCa < 2:2237829/93‑1 (MQ=255)
|
AGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCCGGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCA > NC_000913/4478437‑4478614
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCC‑GGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCT > NC_000913/4478432‑4478620
|
GATAAAGGGTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTTC > SRR4302535.1302401/1‑94 (MQ=60)
AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTT < SRR4302535.81488/94‑1 (MQ=60)
AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTT < SRR4302535.4426257/94‑1 (MQ=60)
AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTT > SRR4302535.2332545/1‑94 (MQ=60)
AGGCTTCTTAGCCAGTATTTCACGGTGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTT < SRR4302535.4663791/94‑1 (MQ=60)
AGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTT > SRR4302535.2167230/1‑94 (MQ=60)
GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTC > SRR4302535.1476261/1‑94 (MQ=60)
CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCAT < SRR4302535.443644/94‑1 (MQ=60)
CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCAT > SRR4302535.3959107/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.514361/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.3905681/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC < SRR4302535.3699355/94‑1 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.1076923/1‑94 (MQ=60)
TTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATATCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATC > SRR4302535.3327904/1‑94 (MQ=60)
TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCA < SRR4302535.1769969/94‑1 (MQ=60)
TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCA > SRR4302535.4217778/1‑94 (MQ=60)
CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCAC > SRR4302535.2209520/1‑94 (MQ=60)
CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCAC < SRR4302535.2398184/94‑1 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTCCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT < SRR4302535.3282264/94‑1 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT > SRR4302535.495418/1‑94 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT > SRR4302535.3829511/1‑94 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT < SRR4302535.707089/94‑1 (MQ=60)
AGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGT > SRR4302535.2954406/1‑94 (MQ=60)
GCGAGTATTGCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTG < SRR4302535.3313664/94‑1 (MQ=60)
GCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTG < SRR4302535.160308/94‑1 (MQ=60)
CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCAGGA‑GCATGCTCCGGGCCT‑‑CGTTTTCATCACTGTGT > SRR4302535.2165212/1‑94 (MQ=60)
CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTT > SRR4302535.3060981/1‑94 (MQ=60)
AGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTT > SRR4302535.1865452/1‑94 (MQ=60)
GTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTT > SRR4302535.82312/1‑94 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGCT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG > SRR4302535.1158747/1‑94 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG > SRR4302535.137829/1‑94 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG < SRR4302535.4682687/94‑1 (MQ=60)
TATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTG > SRR4302535.4304096/1‑94 (MQ=60)
TTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGAT < SRR4302535.2818650/94‑1 (MQ=60)
TTCACGGGGAGTTATGCCTTCTTTGCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATT < SRR4302535.1129480/94‑1 (MQ=60)
CACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTAC > SRR4302535.3163568/1‑94 (MQ=60)
CACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTAC < SRR4302535.3665598/94‑1 (MQ=60)
CGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAG < SRR4302535.464864/94‑1 (MQ=60)
CGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAG < SRR4302535.2791543/94‑1 (MQ=60)
GGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGC > SRR4302535.2341494/1‑94 (MQ=60)
GGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCG < SRR4302535.3957725/94‑1 (MQ=60)
GAGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCG < SRR4302535.591238/94‑1 (MQ=60)
AGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGG > SRR4302535.3524597/1‑94 (MQ=60)
AGTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGACTACAGAGCGG > SRR4302535.3788710/1‑94 (MQ=60)
GTTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGC > SRR4302535.486942/1‑94 (MQ=60)
TTATGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCG < SRR4302535.2412129/94‑1 (MQ=60)
TGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATA > SRR4302535.2656550/1‑94 (MQ=60)
TGCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATA > SRR4302535.4694840/1‑94 (MQ=60)
GCCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAA > SRR4302535.2307628/1‑94 (MQ=60)
CCTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAAC < SRR4302535.4188708/94‑1 (MQ=60)
CTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑TGTTTTCATCACTGTGTTTTGATTACAGTGCGGTGATAACA > SRR4302535.95571/1‑94 (MQ=60)
CTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACA < SRR4302535.3160782/94‑1 (MQ=60)
CTTCTTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACA < SRR4302535.4171293/94‑1 (MQ=60)
TTTACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCT < SRR4302535.4369837/94‑1 (MQ=60)
TACCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGC > SRR4302535.3481306/1‑94 (MQ=60)
TCCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCT < SRR4302535.1572975/94‑1 (MQ=60)
CCATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTG < SRR4302535.2635592/94‑1 (MQ=60)
CATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT < SRR4302535.1236032/94‑1 (MQ=60)
CATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT > SRR4302535.1265224/1‑94 (MQ=60)
CATTTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGT > SRR4302535.1565490/1‑94 (MQ=60)
TTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCA < SRR4302535.4088277/94‑1 (MQ=60)
TTCTGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCA > SRR4302535.4331457/1‑94 (MQ=60)
TGTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATC < SRR4302535.1473066/94‑1 (MQ=60)
GTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA > SRR4302535.3627233/1‑94 (MQ=60)
GTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA < SRR4302535.3521284/94‑1 (MQ=60)
GTAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCA > SRR4302535.1137612/1‑94 (MQ=60)
TAAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAG < SRR4302535.2727892/94‑1 (MQ=60)
AAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGT > SRR4302535.1211903/1‑94 (MQ=60)
AAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGT < SRR4302535.3119621/94‑1 (MQ=60)
AAGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGT > SRR4302535.1057637/1‑94 (MQ=60)
AGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTTAATCAGTT > SRR4302535.907688/1‑94 (MQ=60)
AGAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTT > SRR4302535.2882215/1‑94 (MQ=60)
GAGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTT < SRR4302535.3663969/94‑1 (MQ=60)
AGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGCTAACAGCCTGCTGTTCAATCAGTTTC > SRR4302535.1700013/1‑94 (MQ=60)
AGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTC > SRR4302535.85957/1‑94 (MQ=60)
AGAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTC < SRR4302535.2926495/94‑1 (MQ=60)
GAT‑AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCG > SRR4302535.1612447/1‑94 (MQ=60)
AAAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTT > SRR4302535.3204033/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTTGCTTT > SRR4302535.3968502/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT > SRR4302535.2023387/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT < SRR4302535.136780/94‑1 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT > SRR4302535.1369881/1‑94 (MQ=60)
AAAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTT < SRR4302535.4237430/94‑1 (MQ=60)
AAAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTC > SRR4302535.2355033/1‑94 (MQ=60)
AAAGGCCGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCG > SRR4302535.3533947/1‑94 (MQ=60)
gcggaGCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCC < SRR4302535.801625/89‑1 (MQ=60)
CGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCG > SRR4302535.3106724/1‑94 (MQ=60)
CGGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCG > SRR4302535.1202426/1‑94 (MQ=60)
GGA‑GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGC > SRR4302535.3456921/1‑94 (MQ=60)
gaGCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCC > SRR4302535.1794953/3‑94 (MQ=60)
GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATA < SRR4302535.3900232/94‑1 (MQ=60)
GCATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATA > SRR4302535.1707796/1‑94 (MQ=60)
CATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAG > SRR4302535.900121/1‑94 (MQ=60)
ATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGC > SRR4302535.4424751/1‑94 (MQ=60)
ATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGC > SRR4302535.3487187/1‑94 (MQ=60)
ATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGC > SRR4302535.4494352/1‑94 (MQ=60)
ATGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGC > SRR4302535.3637340/1‑94 (MQ=60)
TGCTCC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCC < SRR4302535.944526/94‑1 (MQ=60)
CC‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCC > SRR4302535.916267/1‑94 (MQ=60)
C‑GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCA > SRR4302535.882770/1‑94 (MQ=60)
GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCCG > SRR4302535.2728927/1‑94 (MQ=60)
GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAG < SRR4302535.3532173/94‑1 (MQ=60)
GGCCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAG > SRR4302535.3517824/1‑94 (MQ=60)
CCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCT > SRR4302535.4664870/1‑94 (MQ=60)
CCTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCT < SRR4302535.3240528/94‑1 (MQ=60)
CTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCaccacgcag > SRR4302535.447014/1‑85 (MQ=60)
CTT‑CGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTT > SRR4302535.1520145/1‑94 (MQ=60)
TCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCT < SRR4302535.761794/94‑1 (MQ=60)
TCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCT < SRR4302535.844868/94‑1 (MQ=60)
TCGTTTTCATCACTGTGTTTTGATTACAGCGCGACGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCT < SRR4302535.1650680/94‑1 (MQ=60)
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GATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAAGGCCGGATGCATGCTCC‑GGCCTTGCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCTTTCGCTTCCGCATAGCCTTCCAGCTTCT > NC_000913/4478432‑4478620
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
