Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,499,347 |
+C |
intergenic (+190/+324) |
yjgZ → / ← yi41 |
hypothetical protein/IS4 hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,499,343 | 1 | . | C | 97.5%
| 626.7
/ 7.4
| 205 | intergenic (+186/+328) | yjgZ/yi41 | hypothetical protein/IS4 hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (4/1); new base C (114/83); total (121/84) |
| Fisher's exact test for biased strand distribution p-value = 4.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 |
Only 100 of 234 total aligned reads displayed.
ACGCGGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGT > NC_000913/4499251‑4499430
|
acGCGGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGActagctag > 1:3125488/1‑93 (MQ=255)
gcgGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑cc > 1:1416319/1‑93 (MQ=255)
gggCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑cccc > 2:1377618/1‑93 (MQ=255)
ggCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑ccccc > 1:3233986/1‑92 (MQ=255)
gCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑ccccct < 2:200671/93‑3 (MQ=255)
tGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑ccccctac > 2:2780326/1‑89 (MQ=255)
tGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑ccccctac < 1:965148/93‑5 (MQ=255)
aCAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGc < 1:4027152/93‑1 (MQ=255)
aaTGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCaa < 1:3490566/93‑1 (MQ=255)
tGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAAcc > 2:4247482/1‑93 (MQ=255)
ggTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaa > 1:4299181/1‑93 (MQ=255)
ggTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaa < 2:4116140/93‑1 (MQ=255)
gTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaa > 2:1962697/1‑93 (MQ=255)
tCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaat > 2:2292623/1‑93 (MQ=255)
tCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaat < 2:2664337/93‑1 (MQ=255)
gcAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaat < 1:639509/92‑1 (MQ=255)
aGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaataa > 2:3287913/1‑93 (MQ=255)
gAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaataaa > 2:58297/1‑93 (MQ=255)
aaTATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaataaat < 2:2629084/93‑1 (MQ=255)
aaTATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCaaataaat > 2:3440938/1‑93 (MQ=255)
atatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATc > 2:1231501/1‑93 (MQ=255)
atatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATc > 2:151507/1‑93 (MQ=255)
atatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATc < 2:1775218/93‑1 (MQ=255)
tatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTGCCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCa > 2:1729749/1‑93 (MQ=255)
tatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCa < 1:4481389/93‑1 (MQ=255)
tatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCa > 1:3914691/1‑93 (MQ=255)
tatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCa > 1:1555902/1‑93 (MQ=255)
tatGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCa > 2:2447067/1‑93 (MQ=255)
atGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCaa > 2:2990665/1‑93 (MQ=255)
atGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCaa < 1:2893641/93‑1 (MQ=255)
tGAGTTAGGCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAAc > 2:4577202/1‑93 (MQ=255)
tGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAAc < 1:3514823/93‑1 (MQ=255)
tGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAAc > 1:2226492/1‑93 (MQ=255)
aGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCa > 1:1873450/1‑93 (MQ=255)
aGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCa > 2:3725487/1‑93 (MQ=255)
aGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCa > 1:3837510/1‑93 (MQ=255)
aGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCa > 2:1050065/1‑93 (MQ=255)
gTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCAt > 1:3259896/1‑93 (MQ=255)
gCCCGGGGTTATTCCTGGGGTCAGTACTTCAGATCTACCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTc < 2:4369864/93‑1 (MQ=255)
gCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTc > 1:1248362/1‑93 (MQ=255)
gCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTc > 2:1013267/1‑93 (MQ=255)
gCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACAATCGTc > 1:482389/1‑93 (MQ=255)
cccGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCa < 2:3545613/93‑1 (MQ=255)
cGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCaga > 2:2092419/1‑93 (MQ=255)
cGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCaga < 1:1213558/93‑1 (MQ=255)
cGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCaga < 1:3973900/93‑1 (MQ=255)
ggCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCagag < 1:2483854/93‑1 (MQ=255)
ggCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCagag < 2:1951279/93‑1 (MQ=255)
gttgttCCTGGGTTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGc < 1:371970/93‑1 (MQ=255)
gTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCCACCAAATAAATCAACCATCGTCAGAGTGc > 2:1594854/1‑93 (MQ=255)
gTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGc > 2:477840/1‑93 (MQ=255)
gTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGc > 1:2377908/1‑93 (MQ=255)
gTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGc > 2:1465715/1‑93 (MQ=255)
ttATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCa > 2:4308461/1‑93 (MQ=255)
tATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCaa < 1:1634134/93‑1 (MQ=255)
aTTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAAt < 1:3108692/93‑1 (MQ=255)
aTTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAAt > 1:2761383/1‑93 (MQ=255)
ttCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATc > 1:2018334/1‑93 (MQ=255)
ccTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGt > 2:2921779/1‑93 (MQ=255)
cTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGtt < 1:3022696/93‑1 (MQ=255)
tGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTc > 2:2499785/1‑93 (MQ=255)
tGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTc > 1:3062164/1‑93 (MQ=255)
tGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTc > 1:4623453/1‑93 (MQ=255)
tGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTc > 2:935906/1‑93 (MQ=255)
tGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTc < 1:3212818/93‑1 (MQ=255)
gggTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCat > 1:3800969/1‑93 (MQ=255)
ggTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCata < 1:2150283/93‑1 (MQ=255)
ggTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCata > 2:3079466/1‑93 (MQ=255)
tCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCAtata > 2:3262920/1‑93 (MQ=255)
taGTACTTCAGAGCTAGCCTCCGGTACCAGACTAGCTAG‑CCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATaca < 1:1460660/92‑1 (MQ=255)
aGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATaca < 2:3951387/93‑1 (MQ=255)
gTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATacac > 2:523210/1‑93 (MQ=255)
gTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATacac < 2:2413073/93‑1 (MQ=255)
gTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATacac < 2:3973954/93‑1 (MQ=255)
gTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATacac > 1:3787210/1‑93 (MQ=255)
cTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGt > 1:4667206/1‑93 (MQ=255)
cTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGt < 2:8221/93‑1 (MQ=255)
ttCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTc > 1:341002/1‑93 (MQ=255)
ttCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTc > 2:1492160/1‑93 (MQ=255)
tCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCg > 1:771989/1‑93 (MQ=255)
aGATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGt < 1:2510719/93‑1 (MQ=255)
aGATCTAGCCTCCGGTACCAGACTAGCTAGACCCCTACGCAACCAAATAAATCAACCATAGTCAGAGTGCAATCGTTCATATACACTGTCGGt > 1:2317736/1‑93 (MQ=255)
gATCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTg > 2:4664324/1‑93 (MQ=255)
aTCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGa > 1:2644698/1‑93 (MQ=255)
aTCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGa < 2:4189420/93‑1 (MQ=255)
tCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGAt > 2:387334/1‑93 (MQ=255)
tCTAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGAt > 2:4070156/1‑93 (MQ=255)
tAGCCTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATgc < 2:3185484/93‑1 (MQ=255)
tAGCCTCCGCTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATgc < 1:1014859/93‑1 (MQ=255)
ccTCCGGTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCt > 1:4102646/1‑93 (MQ=255)
ggTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTaaaaa > 2:1126095/1‑93 (MQ=255)
gTACCAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTaaaaaa < 2:4642276/93‑1 (MQ=255)
tatcAGAGTAGATAGCCCCCCACGCAACCAAATAAATCAACCATCGTCAGAGTGCACTCGTTCATATACACTGTCGGTGATGCGCTAAAAAAt < 1:3632926/90‑1 (MQ=255)
cAGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCg > 1:812978/1‑93 (MQ=255)
aGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGt < 1:3572989/93‑1 (MQ=255)
aGACTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGt > 2:2176009/1‑93 (MQ=255)
aCTAGCTAGCCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTa < 1:46021/93‑1 (MQ=255)
tagctagcCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAAt < 1:4554161/93‑1 (MQ=255)
agctagcCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATg < 1:257051/93‑1 (MQ=255)
gctagcCCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGt > 1:1776580/1‑93 (MQ=255)
|
ACGCGGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CCCCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGT > NC_000913/4499251‑4499430
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCCTC > NC_000913/4499255‑4499440
|
GGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CC‑CCC > SRR4302535.3256427/1‑94 (MQ=60)
GGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CC‑CCC < SRR4302535.1457892/94‑1 (MQ=60)
GCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CC‑CCcta < SRR4302535.996641/94‑4 (MQ=60)
CTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTAC < SRR4302535.1151199/94‑1 (MQ=60)
TGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACG > SRR4302535.1124039/1‑94 (MQ=60)
TGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACG < SRR4302535.972008/94‑1 (MQ=60)
GACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGC > SRR4302535.4005694/1‑94 (MQ=60)
ACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCA < SRR4302535.4054707/94‑1 (MQ=60)
AATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAAC < SRR4302535.3514824/94‑1 (MQ=60)
AATGGGTCAGAATATGAGTAAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAAC < SRR4302535.2243431/94‑1 (MQ=60)
ATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACC < SRR4302535.1999055/94‑1 (MQ=60)
ATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACC > SRR4302535.4565261/1‑94 (MQ=60)
GGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAA > SRR4302535.4328604/1‑94 (MQ=60)
GGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAA > SRR4302535.3390591/1‑94 (MQ=60)
GCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATA < SRR4302535.643978/94‑1 (MQ=60)
CAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAA < SRR4302535.4706225/94‑1 (MQ=60)
CAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAA < SRR4302535.2724299/94‑1 (MQ=60)
CAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAA > SRR4302535.3999009/1‑94 (MQ=60)
CAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAA > SRR4302535.314564/1‑94 (MQ=60)
AGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAA > SRR4302535.2380315/1‑94 (MQ=60)
GAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAAT < SRR4302535.4364262/94‑1 (MQ=60)
AATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGCTCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATC > SRR4302535.2526514/1‑94 (MQ=60)
ATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCA > SRR4302535.3941480/1‑94 (MQ=60)
ATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCA > SRR4302535.3590906/1‑94 (MQ=60)
ATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCA > SRR4302535.1567118/1‑94 (MQ=60)
TATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAA < SRR4302535.4512148/94‑1 (MQ=60)
ATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAAC < SRR4302535.4525601/94‑1 (MQ=60)
ATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAAC > SRR4302535.2242333/1‑94 (MQ=60)
ATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAAC < SRR4302535.2914108/94‑1 (MQ=60)
ATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAAC < SRR4302535.711867/94‑1 (MQ=60)
TGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACC < SRR4302535.3539247/94‑1 (MQ=60)
GAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCA > SRR4302535.3863965/1‑94 (MQ=60)
GAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCA > SRR4302535.1886951/1‑94 (MQ=60)
AGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCAT > SRR4302535.3282551/1‑94 (MQ=60)
AGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTC > SRR4302535.1775419/1‑94 (MQ=60)
AGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTC > SRR4302535.1257271/1‑94 (MQ=60)
AGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACAATCGTC > SRR4302535.485772/1‑94 (MQ=60)
CCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAG > SRR4302535.1579338/1‑94 (MQ=60)
CCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAG > SRR4302535.3186623/1‑94 (MQ=60)
CCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAG < SRR4302535.2603777/94‑1 (MQ=60)
CCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGA < SRR4302535.346036/94‑1 (MQ=60)
CCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGA < SRR4302535.1825947/94‑1 (MQ=60)
CGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAG > SRR4302535.4645533/1‑94 (MQ=60)
CGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAG < SRR4302535.1222262/94‑1 (MQ=60)
CGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAG < SRR4302535.4001044/94‑1 (MQ=60)
CGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAG < SRR4302535.3863929/94‑1 (MQ=60)
CGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAG < SRR4302535.3899671/94‑1 (MQ=60)
GGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGT > SRR4302535.3399525/1‑94 (MQ=60)
GGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGT < SRR4302535.2501761/94‑1 (MQ=60)
CGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGC > SRR4302535.2394987/1‑94 (MQ=60)
TTTATTCCTGGGGTCAGTACTTCAGATCTGGCCTCTGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAATGCA < SRR4302535.2046440/94‑1 (MQ=60)
GTTGTTCCTGGGTTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCA < SRR4302535.374543/94‑1 (MQ=60)
GTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCA > SRR4302535.1362820/1‑94 (MQ=60)
TATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAAT < SRR4302535.2166429/94‑1 (MQ=60)
TATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAAT < SRR4302535.465761/94‑1 (MQ=60)
TATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAAT < SRR4302535.1645942/94‑1 (MQ=60)
TATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAAT > SRR4302535.2781059/1‑94 (MQ=60)
TATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAAT < SRR4302535.873320/94‑1 (MQ=60)
ATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATC > SRR4302535.2032878/1‑94 (MQ=60)
ATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATC < SRR4302535.3130334/94‑1 (MQ=60)
ATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATC < SRR4302535.2881334/94‑1 (MQ=60)
TCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGT > SRR4302535.3809751/1‑94 (MQ=60)
CCTGGGGTCAGTACTTCAGATCTACCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTT < SRR4302535.4118182/94‑1 (MQ=60)
CTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTC < SRR4302535.3043860/94‑1 (MQ=60)
CTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTC > SRR4302535.4654854/1‑94 (MQ=60)
CTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTC > SRR4302535.3083575/1‑94 (MQ=60)
gtGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCA < SRR4302535.3252487/92‑1 (MQ=60)
TGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCA < SRR4302535.3235070/94‑1 (MQ=60)
gggggtagttcttcagattctggcttccggACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCAT < SRR4302535.3741107/64‑1 (MQ=60)
GTGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCAT < SRR4302535.3690882/94‑1 (MQ=60)
GGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCAT > SRR4302535.3827170/1‑94 (MQ=60)
GGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATA < SRR4302535.1421632/94‑1 (MQ=60)
GGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATAT < SRR4302535.2165746/94‑1 (MQ=60)
TCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAACAAATCAACCATCGTCAGAGTGCAATCGTTCATATAC < SRR4302535.773758/94‑1 (MQ=60)
TAGTACTTCAGAGCTAGCCTCCGGTACCAGACTAGCTAG‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACAC < SRR4302535.1471126/94‑1 (MQ=60)
AGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACAC > SRR4302535.4676477/1‑94 (MQ=60)
AGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACAC > SRR4302535.2966053/1‑94 (MQ=60)
AGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACAC > SRR4302535.3813335/1‑94 (MQ=60)
AGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACT > SRR4302535.251671/1‑94 (MQ=60)
GTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACT < SRR4302535.3820221/94‑1 (MQ=60)
TACTTGCGATCTAGCCTCCGGTACCAGTCTAGCTAG‑CCTCATCCGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATGCACTG < SRR4302535.3045416/94‑1 (MQ=60)
TACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTG < SRR4302535.3129995/94‑1 (MQ=60)
ACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGT > SRR4302535.4698749/1‑94 (MQ=60)
CTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTC > SRR4302535.343368/1‑94 (MQ=60)
CTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTC > SRR4302535.794231/1‑94 (MQ=60)
CTTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTC < SRR4302535.3527827/94‑1 (MQ=60)
TTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCG < SRR4302535.3268315/94‑1 (MQ=60)
TTCAGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCG > SRR4302535.777421/1‑94 (MQ=60)
CAGATCTAGCCTCCGGTACCAGACTAGCTAGACC‑CCTACGCAACCAAATAAATCAACCATAGTCAGAGTGCAATCGTTCATATACACTGTCGGT > SRR4302535.2334325/1‑94 (MQ=60)
CAGAGCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGT < SRR4302535.1557096/94‑1 (MQ=60)
AGATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTG < SRR4302535.2528818/94‑1 (MQ=60)
GATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGA > SRR4302535.2663639/1‑94 (MQ=60)
ATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGAT < SRR4302535.2283969/94‑1 (MQ=60)
ATCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGAT > SRR4302535.3228550/1‑94 (MQ=60)
TCTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATG < SRR4302535.4129518/94‑1 (MQ=60)
CTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGC > SRR4302535.4172733/1‑94 (MQ=60)
CTAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGC < SRR4302535.3046259/94‑1 (MQ=60)
TAGCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCG > SRR4302535.2459384/1‑94 (MQ=60)
TAGCCTCCGCTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCG < SRR4302535.1022073/94‑1 (MQ=60)
GCCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCT > SRR4302535.4130736/1‑94 (MQ=60)
CCTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTA < SRR4302535.2571153/94‑1 (MQ=60)
CTCCGGTACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAA > SRR4302535.2023827/1‑94 (MQ=60)
CCGGTACCAGACTAGCTAG‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAA > SRR4302535.1625838/1‑94 (MQ=60)
TACCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATG < SRR4302535.3658102/94‑1 (MQ=60)
CCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCG > SRR4302535.818676/1‑94 (MQ=60)
CCAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCG > SRR4302535.2718969/1‑94 (MQ=60)
CAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGT < SRR4302535.877770/94‑1 (MQ=60)
CAGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGT > SRR4302535.3576012/1‑94 (MQ=60)
AGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTT < SRR4302535.1243955/94‑1 (MQ=60)
AGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTT < SRR4302535.3597766/94‑1 (MQ=60)
AGACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTT > SRR4302535.4598356/1‑94 (MQ=60)
GACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTA < SRR4302535.3865996/94‑1 (MQ=60)
GACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTA > SRR4302535.49240/1‑94 (MQ=60)
ACTAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAA < SRR4302535.46370/94‑1 (MQ=60)
TAGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATG < SRR4302535.4585273/94‑1 (MQ=60)
TAGCTAG‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGT > SRR4302535.3804607/1‑94 (MQ=60)
AGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGT < SRR4302535.258826/94‑1 (MQ=60)
AGCTAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGT > SRR4302535.1789443/1‑94 (MQ=60)
TAGCCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGA > SRR4302535.34054/1‑94 (MQ=60)
agcCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAG > SRR4302535.3521748/4‑94 (MQ=60)
gcCC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGT > SRR4302535.476948/3‑94 (MQ=60)
C‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTT > SRR4302535.1192274/1‑94 (MQ=60)
C‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGAGCAATCGGTCATATACACTGTCGGCGATGCGCTAAAAAATGCGTTAATGTTGAGTT > SRR4302535.674779/1‑94 (MQ=60)
C‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCC > SRR4302535.1973660/1‑94 (MQ=60)
CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCCT > SRR4302535.2042979/1‑94 (MQ=60)
CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCCT < SRR4302535.3136409/94‑1 (MQ=60)
CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCCT > SRR4302535.1234520/1‑94 (MQ=60)
CTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCCTC > SRR4302535.876067/1‑94 (MQ=60)
CTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCCTC > SRR4302535.4131159/1‑94 (MQ=60)
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GGGCTGACAATGGGTCAGAATATGAGTTAGCCCGGCGTTATTCCTGGGGTCAGTACTTCAGATCTAGCCTCCGGTACCAGACTAGCTAG‑CC‑CCTACGCAACCAAATAAATCAACCATCGTCAGAGTGCAATCGTTCATATACACTGTCGGTGATGCGCTAAAAAATGCGTTAATGTTGAGTTCCTC > NC_000913/4499255‑4499440
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
