Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,606,400	G→A	Q62Q (CAG→CAA)	yjjG →	putative phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,606,400	0	G	A	100.0%	746.6 / NA	212	Q62Q (CAG→CAA)	yjjG	putative phosphatase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (121/91); total (121/91)

Only 100 of 217 total aligned reads displayed.

CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGG  >  NC_000913/4606310‑4606488

cACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACt                                                                                        >  1:3817262/1‑93 (MQ=255)

 aCCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACtt                                                                                       >  2:1653589/1‑93 (MQ=255)

 aCCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACtt                                                                                       >  2:2022108/1‑93 (MQ=255)

 aCCTTTACCGCTGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACtt                                                                                       >  1:760328/1‑93 (MQ=255)

  ccTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTc                                                                                      >  1:2973599/1‑93 (MQ=255)

  ccTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTc                                                                                      >  2:3149100/1‑93 (MQ=255)

  ccTTTACCGCTGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTc                                                                                      >  2:309373/1‑93 (MQ=255)

   cTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCa                                                                                     <  2:3989564/93‑1 (MQ=255)

    tttACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAg                                                                                    >  1:1090521/1‑93 (MQ=255)

    tttACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAg                                                                                    >  2:3308346/1‑93 (MQ=255)

    tttACCGCGGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAg                                                                                    <  1:2899976/93‑1 (MQ=255)

      tACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCa                                                                                  >  1:2141226/1‑93 (MQ=255)

        ccGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACg                                                                                <  2:2950978/93‑1 (MQ=255)

          gCTGAAGATTTTCAGGACTGTCAGGCCGTTAACAAGCCACTGTGGGAGGATTATCAAAACGGCCCGATCACTTCATTAGAACCTCAGAACggg                                                                              >  2:3557142/1‑93 (MQ=255)

            tGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCg                                                                            >  1:1376318/1‑93 (MQ=255)

             gAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCgg                                                                           >  1:493944/1‑93 (MQ=255)

             gAAGATTTTCAGGACTATCAGGCCGTTAACAAGCAACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCgg                                                                           >  2:4461056/1‑93 (MQ=255)

                gATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGttt                                                                        >  2:4657601/1‑93 (MQ=255)

                  ttttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTgg                                                                      >  2:3807053/1‑92 (MQ=255)

                  ttttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTga                                                                      >  2:279655/1‑93 (MQ=255)

                  ttttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTga                                                                      <  2:1121079/93‑1 (MQ=255)

                   tttCAGAACTACCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTgag                                                                     <  2:4063453/93‑1 (MQ=255)

                    ttCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTgaga                                                                    <  1:3703713/93‑1 (MQ=255)

                     tCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGagag                                                                   <  1:2847426/93‑1 (MQ=255)

                      cAGAACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGc                                                                  <  2:504531/93‑1 (MQ=255)

                        ggACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTg                                                                >  2:3649440/1‑93 (MQ=255)

                        ggACTATCAGCCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTg                                                                <  1:949470/93‑1 (MQ=255)

                         gACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTgg                                                               >  1:3260004/1‑93 (MQ=255)

                         aaCTATCAGGCGTTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTgg                                                               <  1:941217/92‑1 (MQ=255)

                          aCTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTggg                                                              >  2:797248/1‑93 (MQ=255)

                              tCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGa                                                          >  2:3825435/1‑93 (MQ=255)

                               taGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGaa                                                         <  2:452997/92‑1 (MQ=255)

                                agcccGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                        <  2:3718505/90‑1 (MQ=255)

                                aGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAc                                                        <  1:4010083/93‑1 (MQ=255)

                                 ggCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGGCGAACg                                                       >  1:880718/1‑93 (MQ=255)

                                 ggCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACg                                                       >  1:2876418/1‑93 (MQ=255)

                                    cGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCt                                                    >  1:423884/1‑93 (MQ=255)

                                     gTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTg                                                   >  1:3912679/1‑93 (MQ=255)

                                     gTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTg                                                   >  2:1735692/1‑93 (MQ=255)

                                       tAACAAGCCCCTGCGGGTGGATTACCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGaa                                                 <  1:1654726/93‑1 (MQ=255)

                                       tAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGaa                                                 <  1:2424715/93‑1 (MQ=255)

                                          cAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGt                                              >  2:2621582/1‑93 (MQ=255)

                                          aaaGCCACGGTGGGTGGATTATCAAAACGGCGCGATCTCTTCATTACAACCACAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGt                                              <  1:2451485/92‑1 (MQ=255)

                                           aaGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTc                                             >  1:4583934/1‑93 (MQ=255)

                                           aaGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTc                                             <  2:148505/93‑1 (MQ=255)

                                            aGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCg                                            <  1:3525288/93‑1 (MQ=255)

                                            aGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCg                                            <  1:4044162/93‑1 (MQ=255)

                                            aGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAAGTCg                                            >  1:4629493/1‑93 (MQ=255)

                                             gCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGa                                           <  2:3233294/93‑1 (MQ=255)

                                             gCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGa                                           >  2:2724212/1‑93 (MQ=255)

                                               cACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAGCGTCGAGc                                         <  2:1406775/93‑1 (MQ=255)

                                               cACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGc                                         >  1:1302689/1‑93 (MQ=255)

                                                  tgtgGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAg                                      >  2:2587733/1‑93 (MQ=255)

                                                  tgtgGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAg                                      <  1:1636724/93‑1 (MQ=255)

                                                      ggtggATTATAAAAACGGCGCGATCACTTCATTACAACTTCAGCACAGGCGGCTTGAGAGCTGGGCCGAACGGCTGACGGTCGAGACAGGCaa                                  >  2:2094494/1‑93 (MQ=255)

                                                        tggATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAAc                                <  1:2665952/93‑1 (MQ=255)

                                                        tggATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAAc                                >  2:3938575/1‑93 (MQ=255)

                                                         ggATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACt                               >  1:910535/1‑93 (MQ=255)

                                                          gATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGTACGGGCGGGTTGAGAGCTGGGCCGAACGGCTGAGCGTCGAACCGGGTAAACTc                              >  2:1018593/1‑93 (MQ=255)

                                                          gATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTc                              <  2:725717/93‑1 (MQ=255)

                                                          gATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTc                              <  1:1773779/93‑1 (MQ=255)

                                                           aTTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGCCCGAACGGCTGAACGTCGAGCCAGGTAAACTCa                             <  2:2281274/93‑1 (MQ=255)

                                                            ttATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCaa                            >  2:3179893/1‑93 (MQ=255)

                                                            ttATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCaa                            >  2:3126213/1‑93 (MQ=255)

                                                            ttATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCaa                            <  1:437706/93‑1 (MQ=255)

                                                              aTCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACg                          >  1:2561916/1‑93 (MQ=255)

                                                               tCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGa                         >  1:2288390/1‑93 (MQ=255)

                                                                 aaaaCGGCGCGATCACTTCATTACAACTTCAGCGCGGTCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAg                       <  2:2977389/93‑1 (MQ=255)

                                                                 aaaaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAg                       >  1:539548/1‑93 (MQ=255)

                                                                 aaaaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGATTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCACGTAAAATCAACGAAg                       >  2:4050630/1‑93 (MQ=255)

                                                                  aaaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGc                      >  2:549438/1‑93 (MQ=255)

                                                                   aaCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGcc                     >  1:4082406/1‑93 (MQ=255)

                                                                    aCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAGGCCt                    >  2:3152769/1‑93 (MQ=255)

                                                                    aCGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCt                    <  2:4178924/93‑1 (MQ=255)

                                                                      ggCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCttt                  >  2:1828708/1‑93 (MQ=255)

                                                                      ggCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCttt                  <  1:509708/93‑1 (MQ=255)

                                                                       gcgcGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTtta                 <  1:2344115/93‑1 (MQ=255)

                                                                        cgcgATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTttat                >  2:2175109/1‑93 (MQ=255)

                                                                          cgATCACTTCATTCCAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGACCGTCGAGCCAGGTAAACTCAACGAAGCCTttatta              <  2:2687304/93‑1 (MQ=255)

                                                                           gATCACTTCATTACAACTTCAGCACGGGCGTTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTaa             <  2:3470864/93‑1 (MQ=255)

                                                                           gATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTaa             <  2:1969198/93‑1 (MQ=255)

                                                                           gATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTaa             <  2:3464769/93‑1 (MQ=255)

                                                                            aTCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAt            <  2:2193655/93‑1 (MQ=255)

                                                                            aTCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAt            <  1:3318180/93‑1 (MQ=255)

                                                                              cACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATga          >  2:4419540/1‑92 (MQ=255)

                                                                              cACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGc          <  1:1330785/93‑1 (MQ=255)

                                                                               aCTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCg         >  1:1220540/1‑93 (MQ=255)

                                                                               aCTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCg         >  2:2429988/1‑93 (MQ=255)

                                                                                 ttCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAt       <  1:3112343/93‑1 (MQ=255)

                                                                                 ttCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAt       >  1:589616/1‑93 (MQ=255)

                                                                                 ttCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAt       >  1:332848/1‑93 (MQ=255)

                                                                                 ttCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAt       <  1:4599044/93‑1 (MQ=255)

                                                                                  tCATTACAACTTGAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATg      <  1:1520699/93‑1 (MQ=255)

                                                                                  tCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATg      >  1:1581463/1‑93 (MQ=255)

                                                                                  tCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATg      <  1:3572689/93‑1 (MQ=255)

                                                                                    aTTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGc    >  1:1968960/1‑93 (MQ=255)

                                                                                    aTTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGc    >  1:2806325/1‑93 (MQ=255)

                                                                                    aTTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGc    >  1:1388137/1‑93 (MQ=255)

                                                                                     ttACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCg   >  1:4487361/1‑93 (MQ=255)

                                                                                      tACAACTTCAGCACGGGCGGGTTGAGAGCTGGGCCGGACGGCTCAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCgg  >  2:1782242/1‑93 (MQ=255)

CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGG  >  NC_000913/4606310‑4606488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  >  NC_000913/4606307‑4606492

CGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAA                                                                                              >  SRR4302535.2419361/1‑94 (MQ=60)

CGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAA                                                                                              >  SRR4302535.1578979/1‑94 (MQ=60)

CGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAA                                                                                              >  SRR4302535.918291/1‑94 (MQ=60)

 GTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAAC                                                                                             >  SRR4302535.2093970/1‑94 (MQ=60)

 GTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAAC                                                                                             <  SRR4302535.580840/94‑1 (MQ=60)

  TCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACT                                                                                            >  SRR4302535.3843606/1‑94 (MQ=60)

   CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTT                                                                                           >  SRR4302535.4464373/1‑94 (MQ=60)

   CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTT                                                                                           >  SRR4302535.1532318/1‑94 (MQ=60)

   CACCTTTACCGCTGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTT                                                                                           >  SRR4302535.765685/1‑94 (MQ=60)

    ACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTC                                                                                          >  SRR4302535.2994472/1‑94 (MQ=60)

    ACCTTTACCGCTGAAGATTTTCAGGACTATCAGGACGTTAACAAGCCACTGTGGGTGGATTATCAAAAAGGCGCGATCACTTCATTACAACTTC                                                                                          >  SRR4302535.402645/1‑94 (MQ=60)

      CTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAG                                                                                        >  SRR4302535.1098292/1‑94 (MQ=60)

       ttacccgtTGAAGATTTTCAGGATTACCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGC                                                                                       <  SRR4302535.1963871/86‑1 (MQ=60)

       TTTACCGCGGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGC                                                                                       <  SRR4302535.2920478/94‑1 (MQ=60)

        tgaccgtggagcatttagaggccttaaggtccgtcAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCA                                                                                      <  SRR4302535.4297478/59‑1 (MQ=60)

        TTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCA                                                                                      >  SRR4302535.2156637/1‑94 (MQ=60)

         TACCGTGGAAGATTTCCAGGACTATCAGGCCTTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCAC                                                                                     <  SRR4302535.3825588/94‑1 (MQ=60)

            CGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGG                                                                                  >  SRR4302535.3342529/1‑94 (MQ=60)

              CTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCG                                                                                >  SRR4302535.1386146/1‑94 (MQ=60)

              CTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCG                                                                                >  SRR4302535.2972639/1‑94 (MQ=60)

               TGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGG                                                                               >  SRR4302535.497408/1‑94 (MQ=60)

                  AGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTT                                                                            >  SRR4302535.1330204/1‑94 (MQ=60)

                       TTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAG                                                                       <  SRR4302535.3729361/94‑1 (MQ=60)

                        TCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGC                                                                      <  SRR4302535.2897065/94‑1 (MQ=60)

                        TCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGC                                                                      <  SRR4302535.2867607/94‑1 (MQ=60)

                         CAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCT                                                                     <  SRR4302535.3925659/94‑1 (MQ=60)

                           GGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGG                                                                   >  SRR4302535.3282659/1‑94 (MQ=60)

                           GGACTATCAGCCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGG                                                                   <  SRR4302535.956193/94‑1 (MQ=60)

                            gtctaccgggctGTTAACAAGCCACTGGGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGG                                                                  <  SRR4302535.2631576/82‑1 (MQ=60)

                            AACTATCGGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGG                                                                  <  SRR4302535.3302591/94‑1 (MQ=60)

                            AACTATCAGGCGTTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGG                                                                  <  SRR4302535.947880/94‑1 (MQ=60)

                              CTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCC                                                                >  SRR4302535.906544/1‑94 (MQ=60)

                                  CAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAAC                                                            >  SRR4302535.4339922/1‑94 (MQ=60)

                                   AGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGGCGAACG                                                           >  SRR4302535.886952/1‑94 (MQ=60)

                                   AGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACG                                                           >  SRR4302535.494897/1‑94 (MQ=60)

                                   AGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACG                                                           <  SRR4302535.4037515/94‑1 (MQ=60)

                                   AGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACG                                                           >  SRR4302535.2896792/1‑94 (MQ=60)

                                    GGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGG                                                          <  SRR4302535.3381392/94‑1 (MQ=60)

                                      cagtaAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCT                                                        <  SRR4302535.1784895/89‑1 (MQ=60)

                                      CCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCT                                                        <  SRR4302535.722974/94‑1 (MQ=60)

                                      CCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCT                                                        >  SRR4302535.426842/1‑94 (MQ=60)

                                       CGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTG                                                       >  SRR4302535.95004/1‑94 (MQ=60)

                                       CGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTG                                                       >  SRR4302535.3939461/1‑94 (MQ=60)

                                        GTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGA                                                      >  SRR4302535.2456747/1‑94 (MQ=60)

                                        GTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGA                                                      >  SRR4302535.1347494/1‑94 (MQ=60)

                                          TAACAAGCCCCTGCGGGTGGATTACCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAC                                                    <  SRR4302535.1666697/94‑1 (MQ=60)

                                          TAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAC                                                    <  SRR4302535.1632612/94‑1 (MQ=60)

                                          TAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAC                                                    <  SRR4302535.2442186/94‑1 (MQ=60)

                                          TAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAC                                                    <  SRR4302535.2247319/94‑1 (MQ=60)

                                           AACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACG                                                   >  SRR4302535.3636539/1‑94 (MQ=60)

                                             CAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTC                                                 <  SRR4302535.2530069/94‑1 (MQ=60)

                                             CAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTC                                                 >  SRR4302535.4518597/1‑94 (MQ=60)

                                             CAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTC                                                 <  SRR4302535.2336373/94‑1 (MQ=60)

                                             CAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTC                                                 >  SRR4302535.4615151/1‑94 (MQ=60)

                                             AAAGCCACTGTGGGTGGATGATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTC                                                 <  SRR4302535.4113977/94‑1 (MQ=60)

                                             AAAGCCACGGTGGGTGGATTATCAAAACGGCGCGATCTCTTCATTACAACCACAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTC                                                 <  SRR4302535.2469156/94‑1 (MQ=60)

                                              AAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAAAGTCG                                                >  SRR4302535.4660909/1‑94 (MQ=60)

                                               AGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGA                                               <  SRR4302535.4071851/94‑1 (MQ=60)

                                               AGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGA                                               >  SRR4302535.1311767/1‑94 (MQ=60)

                                               AGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGA                                               <  SRR4302535.3549767/94‑1 (MQ=60)

                                               AGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGGTTGAGAGCTGGGCCGAACGGCTGAACGTCGA                                               >  SRR4302535.3550500/1‑94 (MQ=60)

                                                 CCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGC                                             >  SRR4302535.1311991/1‑94 (MQ=60)

                                                 CCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGC                                             >  SRR4302535.2827370/1‑94 (MQ=60)

                                                  CACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCC                                            <  SRR4302535.2881945/94‑1 (MQ=60)

                                                  CACTGTGGGAGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGACCGTCGAGCC                                            >  SRR4302535.1137021/1‑94 (MQ=60)

                                                     TGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGG                                         <  SRR4302535.1648547/94‑1 (MQ=60)

                                                      GTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGT                                        >  SRR4302535.56844/1‑94 (MQ=60)

                                                       TGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTA                                       <  SRR4302535.839617/94‑1 (MQ=60)

                                                         GGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAA                                     <  SRR4302535.100064/94‑1 (MQ=60)

                                                         GGTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAA                                     >  SRR4302535.2604207/1‑94 (MQ=60)

                                                          GTGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAAC                                    <  SRR4302535.930512/94‑1 (MQ=60)

                                                           TGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACT                                   >  SRR4302535.917009/1‑94 (MQ=60)

                                                           TGGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACT                                   <  SRR4302535.2685038/94‑1 (MQ=60)

                                                            GGATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTC                                  >  SRR4302535.501054/1‑94 (MQ=60)

                                                            GGATTATCAAAACGGCGCGATAACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTC                                  >  SRR4302535.4633134/1‑94 (MQ=60)

                                                             GATTATCAAAACGGCGCGATCACTTCATTCCAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCA                                 <  SRR4302535.3111814/94‑1 (MQ=60)

                                                             GATTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCA                                 <  SRR4302535.1786631/94‑1 (MQ=60)

                                                               TTATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAAC                               <  SRR4302535.440768/94‑1 (MQ=60)

                                                                TATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACG                              >  SRR4302535.2580358/1‑94 (MQ=60)

                                                                TATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACG                              <  SRR4302535.4090114/94‑1 (MQ=60)

                                                                 ATCAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGA                             >  SRR4302535.2304736/1‑94 (MQ=60)

                                                                   CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAG                           >  SRR4302535.543313/1‑94 (MQ=60)

                                                                   CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAG                           >  SRR4302535.2370187/1‑94 (MQ=60)

                                                                   CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAG                           >  SRR4302535.2757087/1‑94 (MQ=60)

                                                                   CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAG                           <  SRR4302535.3166307/94‑1 (MQ=60)

                                                                   CAAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAG                           >  SRR4302535.1659388/1‑94 (MQ=60)

                                                                    AAAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGC                          >  SRR4302535.4159913/1‑94 (MQ=60)

                                                                     AAACGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCC                         >  SRR4302535.4110328/1‑94 (MQ=60)

                                                                        CGGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTT                      <  SRR4302535.1457896/94‑1 (MQ=60)

                                                                         GGCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTA                     <  SRR4302535.513272/94‑1 (MQ=60)

                                                                          GCGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTAT                    <  SRR4302535.2360887/94‑1 (MQ=60)

                                                                           CGCGATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATT                   <  SRR4302535.4622107/94‑1 (MQ=60)

                                                                              GATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAT                >  SRR4302535.2080927/1‑94 (MQ=60)

                                                                              GATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAAT                <  SRR4302535.1407510/94‑1 (MQ=60)

                                                                               ATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATG               <  SRR4302535.3341267/94‑1 (MQ=60)

                                                                               ATCACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATG               <  SRR4302535.4066684/94‑1 (MQ=60)

                                                                                 CACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCG             <  SRR4302535.1733674/94‑1 (MQ=60)

                                                                                 CACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCG             <  SRR4302535.1340277/94‑1 (MQ=60)

                                                                                 CACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCG             >  SRR4302535.1395310/1‑94 (MQ=60)

                                                                                 CACTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCG             >  SRR4302535.1229288/1‑94 (MQ=60)

                                                                                   CTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAT           >  SRR4302535.593747/1‑94 (MQ=60)

                                                                                   CTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAT           <  SRR4302535.2099535/94‑1 (MQ=60)

                                                                                   CTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAT           >  SRR4302535.335151/1‑94 (MQ=60)

                                                                                   CTTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGAT           >  SRR4302535.3651012/1‑94 (MQ=60)

                                                                                    TTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATG          <  SRR4302535.4630330/94‑1 (MQ=60)

                                                                                    TTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATG          <  SRR4302535.3134009/94‑1 (MQ=60)

                                                                                    TTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATG          >  SRR4302535.1592878/1‑94 (MQ=60)

                                                                                    TTCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGCCTGAACGTCGGGCCAGGCAAACTCAACGAAGCCTTTATTAATGCGATG          >  SRR4302535.3037665/1‑94 (MQ=60)

                                                                                     TCATTACAACTTGAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGG         <  SRR4302535.1531653/94‑1 (MQ=60)

                                                                                     TCATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGG         <  SRR4302535.3597465/94‑1 (MQ=60)

                                                                                      CATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGC        >  SRR4302535.1398044/1‑94 (MQ=60)

                                                                                      CATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGC        >  SRR4302535.2826275/1‑94 (MQ=60)

                                                                                      CATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGC        >  SRR4302535.1983146/1‑94 (MQ=60)

                                                                                      CATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGCCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGG        >  SRR4302535.3327918/1‑94 (MQ=60)

                                                                                       ATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCG       >  SRR4302535.4518167/1‑94 (MQ=60)

                                                                                       ATTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCG       <  SRR4302535.4692666/94‑1 (MQ=60)

                                                                                        TTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGG      >  SRR4302535.515118/1‑94 (MQ=60)

                                                                                        TTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGG      >  SRR4302535.887884/1‑94 (MQ=60)

                                                                                        TTACAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGG      <  SRR4302535.2597723/94‑1 (MQ=60)

                                                                                           CAACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAA   >  SRR4302535.2958121/1‑94 (MQ=60)

                                                                                            AACTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  >  SRR4302535.3726019/1‑94 (MQ=60)

CGTCACCTTTACCGCTGAAGATTTTCAGGACTATCAGGCCGTTAACAAGCCACTGTGGGTGGATTATCAAAACGGCGCGATCACTTCATTACAGCTTCAGCACGGGCGGTTTGAGAGCTGGGCCGAACGGCTGAACGTCGAGCCAGGTAAACTCAACGAAGCCTTTATTAATGCGATGGCGGAAAT  >  NC_000913/4606307‑4606492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`