Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,622,791 C→T P110S (CCG→TCG)  serB → 3‑phosphoserine phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,622,7910CT100.0% 740.4 / NA 205P110S (CCG→TCG) serB3‑phosphoserine phosphatase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (91/114);  total (91/114)

Only 100 of 213 total aligned reads displayed.

GCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGCCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATG  >  NC_000913/4622701‑4622880
                                                                                          |                                                                                         
gCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCg                                                                                         >  2:669766/1‑93 (MQ=255)
 cAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCgg                                                                                        >  2:2546080/1‑93 (MQ=255)
  aGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCggg                                                                                       >  2:737247/1‑93 (MQ=255)
  aGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCggg                                                                                       >  1:3328626/1‑93 (MQ=255)
    gTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGtt                                                                                     <  1:48525/93‑1 (MQ=255)
     ttCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGttt                                                                                    >  1:1375460/1‑93 (MQ=255)
       cactcacCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGc                                                                                  >  1:1147429/1‑93 (MQ=255)
       cactcacCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGc                                                                                  <  2:3960003/93‑1 (MQ=255)
        actcacCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCt                                                                                 >  1:4504788/1‑93 (MQ=255)
         ctcacCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTg                                                                                >  1:3562198/1‑93 (MQ=255)
           cacCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTggg                                                                              >  2:1629316/1‑92 (MQ=255)
           cacCGCACGGGCTACACACCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGt                                                                              <  2:2617586/93‑1 (MQ=255)
            acCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTg                                                                             >  2:2078771/1‑93 (MQ=255)
             ccGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGa                                                                            <  2:1616566/93‑1 (MQ=255)
               gCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATg                                                                          <  1:3421271/93‑1 (MQ=255)
                 aCGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGa                                                                        >  1:617154/1‑93 (MQ=255)
                  cGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATgggt                                                                       >  2:2471712/1‑91 (MQ=255)
                  cGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGat                                                                       <  2:378304/93‑1 (MQ=255)
                   gggCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGata                                                                      <  1:3887542/93‑1 (MQ=255)
                   gggCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGata                                                                      <  1:2104906/93‑1 (MQ=255)
                    ggCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGatat                                                                     <  1:3965725/93‑1 (MQ=255)
                    ggCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGatat                                                                     <  2:1277690/93‑1 (MQ=255)
                    ggCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGatat                                                                     <  2:4124115/93‑1 (MQ=255)
                     gCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATg                                                                    <  2:3374687/93‑1 (MQ=255)
                     gCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATg                                                                    <  1:2677465/93‑1 (MQ=255)
                     gCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGATGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATg                                                                    >  1:2516495/1‑93 (MQ=255)
                       tACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGa                                                                  >  1:2858772/1‑93 (MQ=255)
                        acacGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGAc                                                                 <  2:2117896/93‑1 (MQ=255)
                           cGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTcc                                                              >  2:1946683/1‑93 (MQ=255)
                             ccTGGCCCACGAAGCGCAGGCTGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCAc                                                            <  2:598600/93‑1 (MQ=255)
                             ccTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCAc                                                            >  2:2260583/1‑93 (MQ=255)
                             ccTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCAc                                                            >  2:2267203/1‑93 (MQ=255)
                             ccTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCAc                                                            >  1:923859/1‑93 (MQ=255)
                              cTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCAcc                                                           >  2:588575/1‑93 (MQ=255)
                               tGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCg                                                          >  1:4118375/1‑93 (MQ=255)
                                ggCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGc                                                         >  1:3664940/1‑93 (MQ=255)
                                 gCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGcc                                                        >  1:578523/1‑93 (MQ=255)
                                     ccGAAGCGCAGCCGGATGTCGCCCCGCTGGGGAAAATCCCGCGCCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGCCTCCTCCGCCATcc                                                    <  2:3005366/92‑1 (MQ=255)
                                      cGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCa                                                   >  2:1432576/1‑93 (MQ=255)
                                      cGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCa                                                   <  2:4206416/93‑1 (MQ=255)
                                      cGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGACATCCa                                                   >  1:2322626/1‑93 (MQ=255)
                                       gAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAg                                                  >  1:2018596/1‑93 (MQ=255)
                                        aaGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGa                                                 <  1:4580891/93‑1 (MQ=255)
                                         aGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAt                                                <  1:705200/93‑1 (MQ=255)
                                         aGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAt                                                <  2:3829002/93‑1 (MQ=255)
                                         aGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAt                                                <  1:4251643/93‑1 (MQ=255)
                                         aGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAt                                                <  2:1898871/93‑1 (MQ=255)
                                         aGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAt                                                <  1:3829024/93‑1 (MQ=255)
                                         aGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAt                                                <  1:3729919/93‑1 (MQ=255)
                                          gctcAGCTGGATGTCGCCCCGCTGGGTAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAtt                                               <  2:3369415/90‑1 (MQ=255)
                                          gcgcAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAtt                                               <  2:3461079/93‑1 (MQ=255)
                                          gcgcAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAtt                                               >  1:2242280/1‑93 (MQ=255)
                                          gcgcAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAtt                                               <  1:240335/93‑1 (MQ=255)
                                          gcgcAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAtt                                               <  1:3133599/93‑1 (MQ=255)
                                           cgcAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTg                                              <  1:4401094/93‑1 (MQ=255)
                                            gcAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGa                                             >  1:4318788/1‑93 (MQ=255)
                                             cAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGaa                                            <  1:678454/93‑1 (MQ=255)
                                             cAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGaa                                            >  1:2806453/1‑93 (MQ=255)
                                             cAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGaa                                            >  2:1460052/1‑93 (MQ=255)
                                              aGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAAt                                           <  2:2585621/93‑1 (MQ=255)
                                               gCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATg                                          >  1:824996/1‑93 (MQ=255)
                                               gCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATg                                          <  2:795091/93‑1 (MQ=255)
                                               gCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATg                                          <  2:838899/93‑1 (MQ=255)
                                                 tGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTa                                        >  2:1394645/1‑93 (MQ=255)
                                                 tGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGCTTGCTGGCGATGGATATGGACTCGACAGCCATCAAGATTGAAAGTa                                        >  2:1768606/1‑93 (MQ=255)
                                                  ggATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTAt                                       <  2:3638327/93‑1 (MQ=255)
                                                   gATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTAtt                                      >  1:3665839/1‑93 (MQ=255)
                                                   gATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTAtt                                      >  2:268149/1‑93 (MQ=255)
                                                   gATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTAtt                                      >  2:4147324/1‑93 (MQ=255)
                                                   gATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTAtt                                      >  2:4257269/1‑93 (MQ=255)
                                                    aTGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCGCCGCCATCCAGATTGAATGTATtg                                     <  1:2644790/93‑1 (MQ=255)
                                                     tGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATtga                                    <  1:4017836/93‑1 (MQ=255)
                                                     tGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATtga                                    >  2:233580/1‑93 (MQ=255)
                                                     tGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATtga                                    <  1:1986728/93‑1 (MQ=255)
                                                      gTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATtgat                                   <  2:3571784/93‑1 (MQ=255)
                                                        cGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATtgatga                                 <  1:4210650/93‑1 (MQ=255)
                                                        cGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATtgatga                                 <  1:4406119/93‑1 (MQ=255)
                                                         gCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGaa                                >  2:4494888/1‑93 (MQ=255)
                                                          ccccGCTGGGGAAAATCCCGCACCTGCGGACGTCGGGTTTGCTGGTGATGAATATGGACTCCGCCGCCATCCAGATTGAATGTATTGATGaaa                               <  2:2177765/93‑1 (MQ=255)
                                                          ccccGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGaaa                               <  2:1107856/93‑1 (MQ=255)
                                                          ccccGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGaaa                               <  2:2656793/93‑1 (MQ=255)
                                                           cccGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAAt                              <  2:2011606/93‑1 (MQ=255)
                                                           cccGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAAt                              >  1:299730/1‑93 (MQ=255)
                                                            ccGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAAtt                             >  2:2433399/1‑93 (MQ=255)
                                                              gCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGc                           <  1:1243238/93‑1 (MQ=255)
                                                              gCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGc                           <  1:213102/93‑1 (MQ=255)
                                                              gCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGc                           <  2:1559163/93‑1 (MQ=255)
                                                               cTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGcc                          <  1:3179988/93‑1 (MQ=255)
                                                                   ggAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAAc                      >  2:3278133/1‑93 (MQ=255)
                                                                       aaTCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGc                  <  1:4464746/93‑1 (MQ=255)
                                                                       aaTCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGc                  <  2:538246/93‑1 (MQ=255)
                                                                           ccGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGa              <  1:1532637/93‑1 (MQ=255)
                                                                            cGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGaa             <  1:4483631/93‑1 (MQ=255)
                                                                            cGCACCTGCGCACGTCGGGTTTGCTGGAGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGaa             <  1:940252/93‑1 (MQ=255)
                                                                             gCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAAc            <  2:3492948/93‑1 (MQ=255)
                                                                               aCCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACgg          >  2:1116522/1‑93 (MQ=255)
                                                                                  tGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCg       >  1:4341262/1‑93 (MQ=255)
                                                                                   gcgcACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCga      <  1:1427812/93‑1 (MQ=255)
                                                                                       aCGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGAtg  <  2:1289055/93‑1 (MQ=255)
                                                                                       aCGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGAtg  >  1:186382/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGCCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATG  >  NC_000913/4622701‑4622880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGCCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATGGTG  >  NC_000913/4622698‑4622883
                                                                                             |                                                                                            
CTGGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGT                                                                                              >  SRR4302535.4475505/1‑94 (MQ=60)
CTGGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGT                                                                                              <  SRR4302535.148859/94‑1 (MQ=60)
CTGGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGT                                                                                              >  SRR4302535.2726852/1‑94 (MQ=60)
 TGGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTC                                                                                             <  SRR4302535.2739257/94‑1 (MQ=60)
 TGGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTC                                                                                             <  SRR4302535.2568266/94‑1 (MQ=60)
  GGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCG                                                                                            <  SRR4302535.4515743/94‑1 (MQ=60)
  GGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCG                                                                                            >  SRR4302535.508241/1‑94 (MQ=60)
    CAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGG                                                                                          >  SRR4302535.3351783/1‑94 (MQ=60)
       GTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTT                                                                                       >  SRR4302535.1385286/1‑94 (MQ=60)
       GTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTT                                                                                       >  SRR4302535.3258380/1‑94 (MQ=60)
       GTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTT                                                                                       <  SRR4302535.48893/94‑1 (MQ=60)
         TCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGC                                                                                     >  SRR4302535.1155607/1‑94 (MQ=60)
         TCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGC                                                                                     <  SRR4302535.3564616/94‑1 (MQ=60)
          CACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCT                                                                                    >  SRR4302535.1373425/1‑94 (MQ=60)
          CACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCT                                                                                    >  SRR4302535.4535717/1‑94 (MQ=60)
           ACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTG                                                                                   >  SRR4302535.3586898/1‑94 (MQ=60)
                 CGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATG                                                                             <  SRR4302535.4528204/94‑1 (MQ=60)
                  GCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGG                                                                            <  SRR4302535.3445066/94‑1 (MQ=60)
                   CACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGA                                                                           >  SRR4302535.621447/1‑94 (MQ=60)
                    TCGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGAT                                                                          <  SRR4302535.4305291/94‑1 (MQ=60)
                    ACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGAT                                                                          <  SRR4302535.4512427/94‑1 (MQ=60)
                    ACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGAT                                                                          <  SRR4302535.2057268/94‑1 (MQ=60)
                     CGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATA                                                                         >  SRR4302535.2709466/1‑94 (MQ=60)
                      GGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCCCCTGCGCACGTCGGGTTTGCTGGTGATGGATAT                                                                        <  SRR4302535.2349322/94‑1 (MQ=60)
                      GGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATAT                                                                        <  SRR4302535.2120087/94‑1 (MQ=60)
                      GGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATAT                                                                        <  SRR4302535.3607193/94‑1 (MQ=60)
                      GGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATAT                                                                        <  SRR4302535.3914207/94‑1 (MQ=60)
                       GGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATG                                                                       <  SRR4302535.3785110/94‑1 (MQ=60)
                       GGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATG                                                                       <  SRR4302535.2489771/94‑1 (MQ=60)
                       GGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATG                                                                       <  SRR4302535.3754595/94‑1 (MQ=60)
                       GGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATG                                                                       <  SRR4302535.3992815/94‑1 (MQ=60)
                       GGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGATGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATG                                                                       >  SRR4302535.2534633/1‑94 (MQ=60)
                        GCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGG                                                                      <  SRR4302535.2696618/94‑1 (MQ=60)
                        GCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGG                                                                      >  SRR4302535.443300/1‑94 (MQ=60)
                         CTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGA                                                                     >  SRR4302535.2879026/1‑94 (MQ=60)
                          TACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGAC                                                                    >  SRR4302535.2186317/1‑94 (MQ=60)
                           ACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCACACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACT                                                                   <  SRR4302535.4030726/94‑1 (MQ=60)
                            CACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTC                                                                  <  SRR4302535.679964/94‑1 (MQ=60)
                             CCGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCC                                                                 <  SRR4302535.3690669/94‑1 (MQ=60)
                              CGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCA                                                                >  SRR4302535.2633293/1‑94 (MQ=60)
                               GCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCAC                                                               >  SRR4302535.930405/1‑94 (MQ=60)
                               GCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCAC                                                               >  SRR4302535.930404/1‑94 (MQ=60)
                                CCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACC                                                              >  SRR4302535.1438439/1‑94 (MQ=60)
                                 CTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCG                                                             >  SRR4302535.4146561/1‑94 (MQ=60)
                                  TGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGC                                                            >  SRR4302535.3690319/1‑94 (MQ=60)
                                   GGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCC                                                           >  SRR4302535.582589/1‑94 (MQ=60)
                                   GGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCC                                                           <  SRR4302535.302018/94‑1 (MQ=60)
                                     CCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCAT                                                         >  SRR4302535.2001481/1‑94 (MQ=60)
                                     CCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCAT                                                         >  SRR4302535.744286/1‑94 (MQ=60)
                                       CACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCC                                                       >  SRR4302535.4264812/1‑94 (MQ=60)
                                        ACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGACATCCA                                                      >  SRR4302535.2339248/1‑94 (MQ=60)
                                         CGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAG                                                     >  SRR4302535.2033141/1‑94 (MQ=60)
                                           AAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAT                                                   >  SRR4302535.2062968/1‑94 (MQ=60)
                                           AAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAT                                                   <  SRR4302535.4612088/94‑1 (MQ=60)
                                           AAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAT                                                   >  SRR4302535.2855333/1‑94 (MQ=60)
                                           AAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAT                                                   <  SRR4302535.3665904/94‑1 (MQ=60)
                                           AAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAT                                                   >  SRR4302535.584354/1‑94 (MQ=60)
                                           AAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGAT                                                   <  SRR4302535.435218/94‑1 (MQ=60)
                                            AGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATT                                                  <  SRR4302535.4280774/94‑1 (MQ=60)
                                            AGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATT                                                  <  SRR4302535.820274/94‑1 (MQ=60)
                                            AGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATT                                                  <  SRR4302535.710150/94‑1 (MQ=60)
                                            AGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATT                                                  >  SRR4302535.2258232/1‑94 (MQ=60)
                                            AGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATT                                                  <  SRR4302535.3755749/94‑1 (MQ=60)
                                            AGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATT                                                  <  SRR4302535.3855434/94‑1 (MQ=60)
                                             GCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTG                                                 <  SRR4302535.241983/94‑1 (MQ=60)
                                             GCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTG                                                 <  SRR4302535.3155418/94‑1 (MQ=60)
                                              CGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGA                                                <  SRR4302535.4431212/94‑1 (MQ=60)
                                              CGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGA                                                >  SRR4302535.4348334/1‑94 (MQ=60)
                                              CGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGA                                                <  SRR4302535.2890854/94‑1 (MQ=60)
                                               GCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAA                                               <  SRR4302535.2137148/94‑1 (MQ=60)
                                               GCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAA                                               >  SRR4302535.2826404/1‑94 (MQ=60)
                                                CAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAAT                                              <  SRR4302535.683198/94‑1 (MQ=60)
                                                 AGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATG                                             >  SRR4302535.830779/1‑94 (MQ=60)
                                                 AGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATG                                             >  SRR4302535.968674/1‑94 (MQ=60)
                                                  GCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGT                                            <  SRR4302535.706232/94‑1 (MQ=60)
                                                    TGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTAT                                          <  SRR4302535.4448207/94‑1 (MQ=60)
                                                     GGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATT                                         >  SRR4302535.3691223/1‑94 (MQ=60)
                                                      GATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTG                                        <  SRR4302535.2687666/94‑1 (MQ=60)
                                                       ATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCGCCGCCATCCAGATTGAATGTATTGA                                       <  SRR4302535.2663732/94‑1 (MQ=60)
                                                        TGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGAT                                      <  SRR4302535.404928/94‑1 (MQ=60)
                                                        TGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGAT                                      <  SRR4302535.4045322/94‑1 (MQ=60)
                                                        TGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGAT                                      <  SRR4302535.2001034/94‑1 (MQ=60)
                                                        TGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTCCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGAT                                      <  SRR4302535.4507223/94‑1 (MQ=60)
                                                           CGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAA                                   <  SRR4302535.4239469/94‑1 (MQ=60)
                                                           CGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAA                                   <  SRR4302535.4436274/94‑1 (MQ=60)
                                                           CGCCCCACTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAA                                   >  SRR4302535.1554300/1‑94 (MQ=60)
                                                            GCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAA                                  >  SRR4302535.4225474/1‑94 (MQ=60)
                                                            GCCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAA                                  >  SRR4302535.4598503/1‑94 (MQ=60)
                                                             CCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAAT                                 >  SRR4302535.906254/1‑94 (MQ=60)
                                                             CCCCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAAT                                 >  SRR4302535.301819/1‑94 (MQ=60)
                                                               CCGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTG                               <  SRR4302535.3882202/94‑1 (MQ=60)
                                                                CGCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGC                              >  SRR4302535.4714987/1‑94 (MQ=60)
                                                                 GCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCC                             <  SRR4302535.214565/94‑1 (MQ=60)
                                                                 GCTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCC                             <  SRR4302535.1252116/94‑1 (MQ=60)
                                                                  CTGGGGAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCA                            <  SRR4302535.3201973/94‑1 (MQ=60)
                                                                       GAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTG                       <  SRR4302535.123569/94‑1 (MQ=60)
                                                                       GAAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTG                       >  SRR4302535.3975608/1‑94 (MQ=60)
                                                                        AAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGG                      >  SRR4302535.2265445/1‑94 (MQ=60)
                                                                        AAAATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGG                      <  SRR4302535.1414188/94‑1 (MQ=60)
                                                                          AATCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCC                    <  SRR4302535.4495367/94‑1 (MQ=60)
                                                                            TCCCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGG                  <  SRR4302535.3433334/94‑1 (MQ=60)
                                                                              CCGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAA                <  SRR4302535.1543679/94‑1 (MQ=60)
                                                                               CGCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAAC               <  SRR4302535.4514406/94‑1 (MQ=60)
                                                                               CGCACCTGCGCACGTCGGGTTTGCTGGAGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAAC               <  SRR4302535.946908/94‑1 (MQ=60)
                                                                                GCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACG              <  SRR4302535.4056599/94‑1 (MQ=60)
                                                                                GCACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACG              <  SRR4302535.4317852/94‑1 (MQ=60)
                                                                                 CACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGG             <  SRR4302535.4377833/94‑1 (MQ=60)
                                                                                 CACCTGCGCACGCCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGG             <  SRR4302535.2727325/94‑1 (MQ=60)
                                                                                  ACCTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGG            <  SRR4302535.3177306/94‑1 (MQ=60)
                                                                                    CTGCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCG          >  SRR4302535.4370955/1‑94 (MQ=60)
                                                                                      GCGCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAG        <  SRR4302535.1438003/94‑1 (MQ=60)
                                                                                        GCACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATACAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGAT      <  SRR4302535.1887935/94‑1 (MQ=60)
                                                                                         CACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATG     >  SRR4302535.187669/1‑94 (MQ=60)
                                                                                          ACGTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATGG    >  SRR4302535.2262124/1‑94 (MQ=60)
                                                                                            GTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATGGTG  >  SRR4302535.3506085/1‑94 (MQ=60)
                                                                                            GTCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATGGTG  <  SRR4302535.2716360/94‑1 (MQ=60)
                                                                                             |                                                                                            
CTGGCAGGTTCACTCACCGCACGGGCTACACGCCTGGCCCACGAAGCGCAGCTGGATGTCGCCCCGCTGGGGAAAATCCCGCACCTGCGCACGCCGGGTTTGCTGGTGATGGATATGGACTCCACCGCCATCCAGATTGAATGTATTGATGAAATTGCCAAACTGGCCGGAACGGGCGAGATGGTG  >  NC_000913/4622698‑4622883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑