Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG > NC_000913/3725655‑3725839
|
AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCC > SRR4302535.2052038/1‑94 (MQ=60)
GTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑ACC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcc > SRR4302535.375839/1‑92 (MQ=60)
GCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgta < SRR4302535.3805879/94‑6 (MQ=60)
CGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACG < SRR4302535.4269437/94‑1 (MQ=60)
GCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGG < SRR4302535.3879874/94‑1 (MQ=60)
GCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgcaccg > SRR4302535.1709612/1‑86 (MQ=60)
CAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCCTACGGTA > SRR4302535.106797/1‑94 (MQ=60)
CAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccctccggc > SRR4302535.2066139/1‑85 (MQ=60)
ACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCCCCAGCCTTGCTGCGCCCAGTTCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAA < SRR4302535.4164515/94‑1 (MQ=60)
TTCAATGAGCGATATCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAG < SRR4302535.2697881/94‑1 (MQ=60)
TCAATGAGCGATTTCTCTGGATTCGCCGCCACCTTCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAG < SRR4302535.1391393/94‑1 (MQ=60)
CAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCT > SRR4302535.3153919/1‑94 (MQ=60)
AATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCT < SRR4302535.4046068/94‑1 (MQ=60)
ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGCACGGTAATCGAGCTG > SRR4302535.1078275/1‑94 (MQ=60)
ATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccgcgcggatgcgggcg > SRR4302535.1135072/1‑75 (MQ=60)
TGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGC > SRR4302535.4681210/1‑94 (MQ=60)
GAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CGCCC‑‑CCCcccgtcgagacacgaggtgct > SRR4302535.1237068/1‑73 (MQ=60)
ggtTTTCTCTGGTTCCGCCGCGATCGCCGCCAGCCTTGCTGCGCCCAGTGGTGGCCCCC‑‑CAC‑‑C‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGAC < SRR4302535.2524537/91‑1 (MQ=47)
TTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgtactcgaatctaactcctcgacggc > SRR4302535.2058252/1‑66 (MQ=60)
CTCTGGCTTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGA < SRR4302535.1860498/94‑1 (MQ=60)
CTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGCAATCGAGCCGCTGACCGCTGA > SRR4302535.1574425/1‑94 (MQ=60)
CTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGCACGGTAATCGAGCTGCTGACCGCTGCTA > SRR4302535.1301017/1‑94 (MQ=60)
TGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGATCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATC > SRR4302535.3419295/1‑94 (MQ=60)
gattccccgccgtccGCGCCAGCCTTGCTGCGGCCAGTGCTGG‑‑CCC‑‑CACCAC‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC < SRR4302535.252941/79‑1 (MQ=60)
GATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCC < SRR4302535.3775463/94‑1 (MQ=60)
ATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccgtcgggaatcagcctgctgacccccggtatccc > SRR4302535.2497120/1‑58 (MQ=60)
ATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCCCC > SRR4302535.2586870/1‑94 (MQ=60)
TTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccgaaggcaatcaagctgactcccgccgaaagcccc > SRR4302535.354646/1‑57 (MQ=60)
CGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCA < SRR4302535.4208421/94‑1 (MQ=60)
GCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacggtactcgagctgatgaccgctgcgactccccac > SRR4302535.508445/1‑54 (MQ=60)
CCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGCAAGGGAAAAGAGCTGCGGAGCGCTGATATCCGCCAGC > SRR4302535.205568/1‑94 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCCGATATCCGCCAGCAC > SRR4302535.914661/1‑94 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacggtaagcgcgcgcccgacacctgccttccgccggca > SRR4302535.1326128/1‑52 (MQ=60)
CGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑C‑‑CCCCC‑‑CCCccctccggcaaaccacctggtcacacgccgtatctccacgcc > SRR4302535.3320201/1‑52 (MQ=60)
CCGATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCAT < SRR4302535.2700880/94‑1 (MQ=60)
CGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGC‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT < SRR4302535.1556333/94‑1 (MQ=60)
CGATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATC < SRR4302535.2858196/94‑1 (MQ=60)
GATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG < SRR4302535.103250/94‑1 (MQ=60)
GATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG < SRR4302535.199776/94‑1 (MQ=60)
GATCTGCCCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCT < SRR4302535.3171790/94‑1 (MQ=60)
CATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTG < SRR4302535.743018/94‑1 (MQ=60)
ATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccacccggcaacaacccgcccctgcctcgtatcgtcaccgccctg > SRR4302535.1719484/1‑48 (MQ=60)
TCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGA < SRR4302535.288527/94‑1 (MQ=60)
CTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccctgaggggaaggatctccggagccccgctttctctcctcagctgat > SRR4302535.4482613/1‑46 (MQ=60)
TGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACG > SRR4302535.1591461/1‑94 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCC < SRR4302535.1078130/94‑1 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGAAATCGGCCTGCTGACCGCTGAAATAGGCCAGCATCTGAtgca > SRR4302535.1608506/1‑90 (MQ=57)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCCCGCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCC > SRR4302535.4199448/1‑94 (MQ=60)
CGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccccgcgcaaagagcgtgtgtccccctgtaatcccccgcgaactgcccc > SRR4302535.911306/1‑43 (MQ=60)
CCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAG < SRR4302535.3638527/94‑1 (MQ=60)
CCAGCCTCGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAG < SRR4302535.1105876/94‑1 (MQ=60)
CAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcccccccgcaatccgtcgcgtggccgctgcgattcccccccacctccctccagc > SRR4302535.2730400/1‑40 (MQ=60)
AGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTCCGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTA > SRR4302535.723057/1‑94 (MQ=60)
GCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccctacgggaatcgagctggtgcgcgccgtcatcccccccccccttcgcccagcgc > SRR4302535.103537/1‑38 (MQ=60)
CCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACT < SRR4302535.542180/94‑1 (MQ=60)
CTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCcggcccggaatcgcgctgccggacgccgttatccgccagcaacaggcccccgagctca > SRR4302535.2794616/1‑36 (MQ=60)
CTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccgtacggcaaccgggacgctgacggctgcgatccgccagcatctcacccccggaata > SRR4302535.3001005/1‑36 (MQ=60)
GCTGCGCCCAGTGCTGG‑‑CCC‑‑CCC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACT < SRR4302535.3011608/94‑1 (MQ=60)
GCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacggtaatccagctgctgacccctcagatccgcccgccactcaggcccgtactcacc > SRR4302535.295767/1‑33 (MQ=60)
CTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCccccacgggcatagaggcgccggacgctgcaattgccccgccaccgcatcccccaccaccac > SRR4302535.3307765/1‑32 (MQ=60)
CGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGGCAGTACTCACTACGCG > SRR4302535.3122332/1‑94 (MQ=60)
CCCCAGTGCTGG‑‑CCCCTCAC‑‑C‑‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCG < SRR4302535.1924139/94‑1 (MQ=60)
ctgcctcccccagggcctcccccacccccCCCCC‑‑CCCGTACGGTAATCCAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCA < SRR4302535.2410062/65‑1 (MQ=60)
CAGTGCTGG‑‑CCC‑‑CCC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCC < SRR4302535.158910/94‑1 (MQ=60)
CGTGCTGG‑‑CCC‑‑CGC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCC < SRR4302535.1540321/94‑1 (MQ=60)
cgGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.1300034/92‑1 (MQ=60)
GTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.2147114/94‑1 (MQ=60)
GTGCTGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCC > SRR4302535.758595/1‑94 (MQ=60)
GTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCCCTCCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.180389/94‑1 (MQ=60)
tccccccgtgcctgccccacaaccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACG < SRR4302535.4098390/70‑1 (MQ=60)
gccccttgtgcgggccccacacccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACG < SRR4302535.2031613/70‑1 (MQ=60)
CTGG‑‑CCC‑‑CAC‑‑ACCC‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCC < SRR4302535.3185750/94‑1 (MQ=60)
TGG‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCC < SRR4302535.2105136/94‑1 (MQ=60)
GG‑‑CCC‑‑CAC‑‑AC‑C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCA < SRR4302535.4253847/94‑1 (MQ=60)
G‑‑CCC‑‑CAC‑‑A‑‑TCCCCCCC‑‑CCCGGACGGGAATCGACGTGCTGACCGCTGATATCCGCCAGCATCTGACGCCCGTACTCACTACACGCCCCGCCCCCA > SRR4302535.2323260/1‑94 (MQ=60)
agtcctgcccccccaccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCG < SRR4302535.3707458/77‑1 (MQ=60)
cccccctccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAAT < SRR4302535.1793216/85‑1 (MQ=60)
C‑‑A‑‑TC‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTAAGCGCCCCGCCCCCCATCAACG > SRR4302535.618326/1‑94 (MQ=60)
cacacccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCA < SRR4302535.1439718/87‑1 (MQ=60)
catccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAAC < SRR4302535.451049/89‑1 (MQ=60)
aaccCCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACG < SRR4302535.2590083/90‑1 (MQ=60)
C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGGCCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAA > SRR4302535.2308815/1‑94 (MQ=60)
C‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAA > SRR4302535.4435896/1‑94 (MQ=60)
CCCCC‑‑CCCGTAGGTTAACCGGGTTGCCGACCGCTGAAACCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAAC < SRR4302535.3980153/94‑1 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACC > SRR4302535.1377844/1‑94 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA < SRR4302535.3605282/94‑1 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACA > SRR4302535.3568411/1‑94 (MQ=60)
CCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGACCCCAATCAACGTAACA > SRR4302535.496498/1‑94 (MQ=60)
CCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACAC > SRR4302535.4280351/1‑94 (MQ=60)
CC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACT < SRR4302535.147610/94‑1 (MQ=60)
C‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTT > SRR4302535.976374/1‑94 (MQ=60)
C‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTT > SRR4302535.479969/1‑94 (MQ=60)
CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT > SRR4302535.1510601/1‑94 (MQ=60)
CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT > SRR4302535.4588299/1‑94 (MQ=60)
CCCGTACAGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTT < SRR4302535.3486016/94‑1 (MQ=60)
CCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG > SRR4302535.3155527/1‑94 (MQ=60)
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AGTTGCGGCAACAATTCAATGAGCGATTTCTCTGGATTCGCCGCGATCTGCGCCAGCCTTGCTGCGCCCAGTGCTGG‑‑CCC‑‑CAC‑‑A‑‑T‑‑CCCCC‑‑CCCGTACGGTAATCGAGCTGCTGACCGCTGATATCCGCCAGCATCTGACGCCAGTACTCACTACGCGCCCCGCCCCCAATCAACGTAACACTTTG > NC_000913/3725655‑3725839
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
