Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGGCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT  >  NC_000913/4448448‑4448634
                                                                                               |                                                                                             
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CG                                                                                               <  SRR4302535.2170527/94‑1 (MQ=60)
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAACGCGCT‑‑CG                                                                                               >  SRR4302535.29368/1‑94 (MQ=60)
     CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccg                                                                                          >  SRR4302535.3734956/1‑89 (MQ=60)
         AAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatc                                                                                      <  SRR4302535.1922519/94‑10 (MQ=60)
          AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatcc                                                                                     >  SRR4302535.4486365/1‑84 (MQ=60)
          AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatcc                                                                                     >  SRR4302535.3466278/1‑84 (MQ=60)
          AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatcc                                                                                     >  SRR4302535.1974479/1‑84 (MQ=60)
          AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGcgccgcatcc                                                                                     <  SRR4302535.3135175/94‑11 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG                                                                                      <  SRR4302535.2088490/94‑1 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG                                                                                      >  SRR4302535.77799/1‑94 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCG                                                                                      >  SRR4302535.5021/1‑94 (MQ=60)
            GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGG                                                                                     <  SRR4302535.2151249/94‑1 (MQ=60)
              AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCG                                                                                   >  SRR4302535.667259/1‑94 (MQ=60)
               GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGA                                                                                  >  SRR4302535.2618762/1‑94 (MQ=60)
               GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGA                                                                                  >  SRR4302535.3381098/1‑94 (MQ=60)
                AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAT                                                                                 <  SRR4302535.3839492/94‑1 (MQ=60)
                AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCCCGCCGCATCCGGCGAG                                                                                 >  SRR4302535.972592/1‑94 (MQ=60)
                 ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATG                                                                                >  SRR4302535.3263899/1‑94 (MQ=60)
                 ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATG                                                                                <  SRR4302535.1263381/94‑1 (MQ=60)
                   TAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGT                                                                              >  SRR4302535.83632/1‑94 (MQ=60)
                   TAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGT                                                                              >  SRR4302535.2209624/1‑94 (MQ=60)
                    AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTG                                                                             >  SRR4302535.1727781/1‑94 (MQ=60)
                     GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGC                                                                            <  SRR4302535.1481485/94‑1 (MQ=60)
                      AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGGGCT‑‑CGcgccgcatccggcggggggggc                                                                         >  SRR4302535.3939266/1‑72 (MQ=60)
                        AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACT                                                                         <  SRR4302535.769404/94‑1 (MQ=60)
                         AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTG                                                                        <  SRR4302535.1858872/94‑1 (MQ=60)
                         AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTG                                                                        >  SRR4302535.1946292/1‑94 (MQ=60)
                         AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTG                                                                        >  SRR4302535.4230152/1‑94 (MQ=60)
                         AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTG                                                                        <  SRR4302535.4509526/94‑1 (MQ=60)
                         AGAAGAAAAATATGGGGAATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTG                                                                        >  SRR4302535.2567716/1‑94 (MQ=60)
                            AGAAAAATATGGGTTATGGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAG                                                                     <  SRR4302535.31002/94‑1 (MQ=60)
                            AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAG                                                                     >  SRR4302535.3503899/1‑94 (MQ=60)
                              AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCC                                                                   <  SRR4302535.2904221/94‑1 (MQ=60)
                              AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCC                                                                   >  SRR4302535.2693298/1‑94 (MQ=60)
                               AAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCT                                                                  <  SRR4302535.1125249/94‑1 (MQ=60)
                               AAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCT                                                                  <  SRR4302535.4559131/94‑1 (MQ=60)
                                AAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTG                                                                 <  SRR4302535.3338296/94‑1 (MQ=60)
                                 AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGTTGCACTGAAGCCTGA                                                                >  SRR4302535.3162934/1‑94 (MQ=60)
                                 AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGA                                                                >  SRR4302535.2604015/1‑94 (MQ=60)
                                  ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAT                                                               >  SRR4302535.1690237/1‑94 (MQ=60)
                                  ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAT                                                               <  SRR4302535.2864413/94‑1 (MQ=60)
                                   TATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATG                                                              <  SRR4302535.3698518/94‑1 (MQ=60)
                                    ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGC                                                             >  SRR4302535.4075421/1‑94 (MQ=60)
                                    ATGGGGTATGGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGC                                                             <  SRR4302535.1744184/94‑1 (MQ=60)
                                      GGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGA                                                           >  SRR4302535.466901/1‑94 (MQ=60)
                                       GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAC                                                          <  SRR4302535.3114547/94‑1 (MQ=60)
                                       GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAC                                                          <  SRR4302535.732747/94‑1 (MQ=60)
                                        GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACG                                                         >  SRR4302535.581290/1‑94 (MQ=60)
                                        GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACG                                                         >  SRR4302535.3257338/1‑94 (MQ=60)
                                         GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC                                                        >  SRR4302535.3109785/1‑94 (MQ=60)
                                           ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT                                                      >  SRR4302535.1794799/1‑94 (MQ=60)
                                           ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT                                                      >  SRR4302535.84690/1‑94 (MQ=60)
                                            TTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGCAGACTGATGCGACGCTTA                                                     >  SRR4302535.2261549/1‑94 (MQ=60)
                                            TTGAGGGTTGCTATGCCGGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTA                                                     <  SRR4302535.3655718/94‑1 (MQ=60)
                                              GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC                                                   <  SRR4302535.2695073/94‑1 (MQ=60)
                                               AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTCCCG                                                  >  SRR4302535.2432300/1‑94 (MQ=60)
                                                GGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGC                                                 >  SRR4302535.1248448/1‑94 (MQ=60)
                                                 GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG                                                >  SRR4302535.2074558/1‑94 (MQ=60)
                                                  GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT                                               >  SRR4302535.2341982/1‑94 (MQ=60)
                                                  GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT                                               >  SRR4302535.89048/1‑94 (MQ=60)
                                                   TTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGGACTGAAGCCTGATGCGTCGCTTACCGCGGC                                              >  SRR4302535.4033917/1‑94 (MQ=60)
                                                     GCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT                                            >  SRR4302535.1729429/1‑94 (MQ=60)
                                                      CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGCAGCCTGATGCGACGCTTACCGCGTCTTA                                           >  SRR4302535.2622260/1‑94 (MQ=60)
                                                      CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA                                           >  SRR4302535.780383/1‑94 (MQ=60)
                                                       TATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAT                                          >  SRR4302535.2131094/1‑94 (MQ=60)
                                                        ATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC                                         >  SRR4302535.4373054/1‑94 (MQ=60)
                                                        ATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC                                         >  SRR4302535.2820060/1‑94 (MQ=60)
                                                         TGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA                                        >  SRR4302535.986655/1‑94 (MQ=60)
                                                         TGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGAGCACTGAAGCCTGATGGGACGCTTACCGCGTCTTATCA                                        >  SRR4302535.1810326/1‑94 (MQ=60)
                                                          GCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT                                       >  SRR4302535.1420100/1‑94 (MQ=60)
                                                          GCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT                                       <  SRR4302535.1982487/94‑1 (MQ=60)
                                                          GCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT                                       <  SRR4302535.4359887/94‑1 (MQ=60)
                                                          GCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGACTGATGCGACGCTTACCGCGTCTTATCAT                                       >  SRR4302535.4420424/1‑94 (MQ=60)
                                                          GCCTGAGGCCGATTCGTAGGCGGGATAGGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT                                       <  SRR4302535.4066954/94‑1 (MQ=60)
                                                           CCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG                                      >  SRR4302535.1078546/1‑94 (MQ=60)
                                                           CCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG                                      <  SRR4302535.1385692/94‑1 (MQ=60)
                                                           CCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG                                      <  SRR4302535.2304131/94‑1 (MQ=60)
                                                           CCTGAGGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG                                      <  SRR4302535.3501758/94‑1 (MQ=60)
                                                            CTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC                                     >  SRR4302535.3493131/1‑94 (MQ=60)
                                                            CTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC                                     >  SRR4302535.4484732/1‑94 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                    <  SRR4302535.2290399/94‑1 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                    >  SRR4302535.2454179/1‑94 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                    <  SRR4302535.4580632/94‑1 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                    >  SRR4302535.4538735/1‑94 (MQ=60)
                                                              GATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT                                   <  SRR4302535.2963524/94‑1 (MQ=60)
                                                              GATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT                                   <  SRR4302535.1877532/94‑1 (MQ=60)
                                                               ATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGTCTA                                  >  SRR4302535.2785320/1‑94 (MQ=60)
                                                               ATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA                                  >  SRR4302535.3305773/1‑94 (MQ=60)
                                                               ATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA                                  >  SRR4302535.3975712/1‑94 (MQ=60)
                                                                TGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAC                                 <  SRR4302535.3891642/94‑1 (MQ=60)
                                                                 GCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT                                <  SRR4302535.2944288/94‑1 (MQ=60)
                                                                   CGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGG                              >  SRR4302535.2149693/1‑94 (MQ=60)
                                                                    GATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG                             <  SRR4302535.3475796/94‑1 (MQ=60)
                                                                     ATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA                            >  SRR4302535.192169/1‑94 (MQ=60)
                                                                     ATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA                            >  SRR4302535.926216/1‑94 (MQ=60)
                                                                     ATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA                            >  SRR4302535.3171933/1‑94 (MQ=60)
                                                                     ATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA                            >  SRR4302535.2500358/1‑94 (MQ=60)
                                                                      TTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG                           >  SRR4302535.1429563/1‑94 (MQ=60)
                                                                      TTCGTAGGCCGGATAAGGCCCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG                           <  SRR4302535.3224989/94‑1 (MQ=60)
                                                                         GTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC                        <  SRR4302535.3828510/94‑1 (MQ=60)
                                                                             GCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTT                    >  SRR4302535.3407092/1‑94 (MQ=60)
                                                                              CCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTT                   <  SRR4302535.3765339/94‑1 (MQ=60)
                                                                               CGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA                  >  SRR4302535.4168626/1‑94 (MQ=60)
                                                                                GGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGACTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC                 >  SRR4302535.457631/1‑94 (MQ=60)
                                                                                 GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACA                >  SRR4302535.4482175/1‑94 (MQ=60)
                                                                                  ATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAC               >  SRR4302535.4374688/1‑94 (MQ=60)
                                                                                    AAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCGTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGCGCACGCTTTACACCG             >  SRR4302535.560593/1‑94 (MQ=60)
                                                                                     AGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG            <  SRR4302535.2848320/94‑1 (MQ=60)
                                                                                     AGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG            >  SRR4302535.916740/1‑94 (MQ=60)
                                                                                               GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT  <  SRR4302535.1311309/94‑1 (MQ=60)
                                                                                               |                                                                                             
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCT‑‑CGGCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT  >  NC_000913/4448448‑4448634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑