Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,958,588 T→C M168T (ATG→ACG)  argS → arginine tRNA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,958,5880TC100.0% 793.2 / NA 248M168T (ATG→ACG) argSarginine tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (126/122);  total (126/122)

Only 100 of 255 total aligned reads displayed.

TTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTATGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGAAAA  >  NC_000913/1958498‑1958677
                                                                                          |                                                                                         
ttGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGc                                                                                         <  2:5249541/93‑1 (MQ=255)
ttGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGc                                                                                         >  1:8751558/1‑93 (MQ=255)
  ggTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTg                                                                                       <  1:1721064/93‑1 (MQ=255)
    tGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGAt                                                                                     >  2:1230780/1‑93 (MQ=255)
     gACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGCCTGGGGCACTCAGTTCGGTACGCTGCtt                                                                                    >  1:6291060/1‑93 (MQ=255)
     gACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGAtt                                                                                    >  1:7491922/1‑93 (MQ=255)
      aCGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTg                                                                                   >  2:5507632/1‑93 (MQ=255)
       cGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGc                                                                                  <  2:5422802/93‑1 (MQ=255)
        gcagcaGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCa                                                                                 >  2:3249336/1‑93 (MQ=255)
         cagcagTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCAt                                                                                >  1:4962652/1‑93 (MQ=255)
          agcagTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATg                                                                               <  2:4369742/93‑1 (MQ=255)
             agTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCt                                                                            <  2:7504935/93‑1 (MQ=255)
              gtgcgtgcTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTg                                                                           <  1:599464/93‑1 (MQ=255)
              gTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTg                                                                           >  2:8248917/1‑93 (MQ=255)
               tGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTgg                                                                          >  1:8092084/1‑93 (MQ=255)
                gCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGa                                                                         <  1:9804689/93‑1 (MQ=255)
                gCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGa                                                                         <  1:5258511/93‑1 (MQ=255)
                  gTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGaaa                                                                       >  2:9529235/1‑93 (MQ=255)
                  gTACTCTGGAGTTCCTCGGCCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGaaa                                                                       >  2:7232352/1‑93 (MQ=255)
                   tACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTCCGCTGATTGCATGGCTGGcaaa                                                                      >  2:5055257/1‑93 (MQ=255)
                    aCTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAag                                                                     <  1:2366301/93‑1 (MQ=255)
                       ctGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAagcag                                                                  <  1:8820642/93‑1 (MQ=255)
                       ctGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAagcag                                                                  <  2:8501214/93‑1 (MQ=255)
                        tGGAGGTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAagcagc                                                                 <  1:7964974/93‑1 (MQ=255)
                         tgAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAagcagca                                                                <  1:6209115/92‑1 (MQ=255)
                          gAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAagcagcag                                                               <  2:1861932/93‑1 (MQ=255)
                          gAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAagcagcag                                                               >  1:1834066/1‑93 (MQ=255)
                           aGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAagcagcagc                                                              >  2:2628325/1‑93 (MQ=255)
                            gTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAgcagcagca                                                             <  2:9765088/93‑1 (MQ=255)
                                cTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGaa                                                         <  2:7617987/93‑1 (MQ=255)
                                 tCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGaaa                                                        >  1:8313558/1‑93 (MQ=255)
                                  cGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGaaaa                                                       <  1:9230982/93‑1 (MQ=255)
                                  cGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGaaaa                                                       >  2:9432442/1‑93 (MQ=255)
                                  cGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGaaaa                                                       <  2:2755111/93‑1 (MQ=255)
                                  cGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGaaaa                                                       <  2:586799/93‑1 (MQ=255)
                                  cGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGaaaa                                                       >  2:6338687/1‑93 (MQ=255)
                                   ggTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAAc                                                      <  2:7998443/93‑1 (MQ=255)
                                    gTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACg                                                     >  2:5559237/1‑93 (MQ=255)
                                    gTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACg                                                     <  1:616219/93‑1 (MQ=255)
                                     tCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGc                                                    >  2:7959802/1‑93 (MQ=255)
                                     tCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGc                                                    <  2:8381589/93‑1 (MQ=255)
                                     tCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGc                                                    <  2:1181215/93‑1 (MQ=255)
                                       acaAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCg                                                  >  2:7256848/1‑93 (MQ=255)
                                       acaAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCg                                                  <  1:9855666/93‑1 (MQ=255)
                                        caAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCgg                                                 <  1:1238126/93‑1 (MQ=255)
                                         aaaGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCggg                                                >  2:3408887/1‑92 (MQ=255)
                                         aaaGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCggg                                                >  2:694431/1‑92 (MQ=255)
                                          aaGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTg                                               >  2:9047884/1‑93 (MQ=255)
                                          aaGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTg                                               >  1:1592865/1‑93 (MQ=255)
                                           aGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGa                                              <  2:39861/93‑1 (MQ=255)
                                           aGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGa                                              >  2:2158411/1‑93 (MQ=255)
                                           aGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGa                                              <  1:9603450/93‑1 (MQ=255)
                                           aGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGa                                              <  1:4216285/93‑1 (MQ=255)
                                             tGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGaaa                                            <  1:5606834/93‑1 (MQ=255)
                                             ggATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGaaa                                            <  1:3110931/92‑1 (MQ=255)
                                              gATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGaaag                                           >  2:1717889/1‑92 (MQ=255)
                                              gATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAAt                                           >  2:6427151/1‑93 (MQ=255)
                                              gATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAAt                                           <  2:2380898/93‑1 (MQ=255)
                                                ttCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATgg                                         >  1:5751115/1‑93 (MQ=255)
                                                ttCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATgg                                         <  2:2870545/93‑1 (MQ=255)
                                                     gcAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAgctg                                    >  2:4517546/1‑93 (MQ=255)
                                                        aaCCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAgctggct                                 <  1:6654106/93‑1 (MQ=255)
                                                        aaCCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAgctggct                                 >  2:5230379/1‑93 (MQ=255)
                                                        aaCCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAgctggct                                 >  1:2886240/1‑93 (MQ=255)
                                                        aaCCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAgctggct                                 <  2:7854695/93‑1 (MQ=255)
                                                         aCCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAgctcgcta                                >  2:9360211/1‑92 (MQ=255)
                                                           cgcGTCGGCGACTGGTGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGAc                              <  2:1342984/91‑1 (MQ=255)
                                                            aCGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGAcc                             >  2:7000365/1‑93 (MQ=255)
                                                            aCGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGAcc                             <  2:5849409/93‑1 (MQ=255)
                                                             cGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCt                            <  2:6606516/93‑1 (MQ=255)
                                                             cGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCt                            <  1:10011476/93‑1 (MQ=255)
                                                                cGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGATGGCTGACCTTGa                         >  2:7762855/1‑93 (MQ=255)
                                                                 ggCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGTTGGAAAAGCAGCAGGAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGaa                        <  1:1197593/93‑1 (MQ=255)
                                                                 ggCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGaa                        >  1:8401125/1‑93 (MQ=255)
                                                                 ggCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGaa                        >  1:2763740/1‑93 (MQ=255)
                                                                  gCGACTGGGGCACGCGGTTCGGTACGGTGATTGCATGGCTGAAAAAGCAGCAGCAGGAAACCGCCGGTGAAATGGGGCTGGCTGACCTTGAAg                       <  2:7669715/93‑1 (MQ=255)
                                                                      cTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGttt                   >  2:8743083/1‑93 (MQ=255)
                                                                      cTGGGGCACTCAATTAGGTACGCTGATTGCATGGCTGGAAAAGCAGCGGCAGGAAAACGCCGGTGAAATGGAGCTAACTGACCTTGAAGGttt                   <  2:8960091/93‑1 (MQ=255)
                                                                       tGGGGCACTCAGTTCGGTACGCTGATTTTATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGATCTGGCTGACCTTGAAGGTTTc                  >  2:9234632/1‑93 (MQ=255)
                                                                        ggggCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCt                 <  2:3796656/93‑1 (MQ=255)
                                                                          ggCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTAc               <  2:4606632/93‑1 (MQ=255)
                                                                           gCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTAcc              <  1:3956033/93‑1 (MQ=255)
                                                                            cACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACcg             <  2:1094338/93‑1 (MQ=255)
                                                                             aCTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACcgc            <  1:7114591/93‑1 (MQ=255)
                                                                             aCTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACcgc            >  2:6779915/1‑93 (MQ=255)
                                                                             aCTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACcgc            >  1:3737186/1‑93 (MQ=255)
                                                                             aCTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTAAcgc            >  1:9537193/1‑93 (MQ=255)
                                                                              cTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACcgcg           >  1:7289663/1‑93 (MQ=255)
                                                                              cTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACcgcg           >  2:4094146/1‑93 (MQ=255)
                                                                                cAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGAt         <  1:907133/93‑1 (MQ=255)
                                                                                cAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGAt         <  2:4663372/93‑1 (MQ=255)
                                                                                cAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGAt         >  1:1066083/1‑93 (MQ=255)
                                                                                 aGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGGTTCTACCGCGATg        >  1:5821647/1‑93 (MQ=255)
                                                                                  gTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGc       <  1:6838090/93‑1 (MQ=255)
                                                                                   ttCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCg      <  1:4332882/93‑1 (MQ=255)
                                                                                   ttCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCg      >  2:4834562/1‑93 (MQ=255)
                                                                                    tCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGa     >  1:222116/1‑93 (MQ=255)
                                                                                      ggTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGaaa   <  1:2408017/93‑1 (MQ=255)
                                                                                      ggTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACACCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGaaa   >  2:667366/1‑93 (MQ=255)
                                                                                       gTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGaaaa  >  2:5017184/1‑93 (MQ=255)
                                                                                          |                                                                                         
TTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTATGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGAAAA  >  NC_000913/1958498‑1958677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTATGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGAAAAAGCA  >  NC_000913/1958495‑1958681
                                                                                             |                                                                                             
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTAC                                                                                               <  SRR4302540.5529297/94‑1 (MQ=60)
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTAC                                                                                               <  SRR4302540.9415131/94‑1 (MQ=60)
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTAC                                                                                               <  SRR4302540.741027/94‑1 (MQ=60)
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTAC                                                                                               <  SRR4302540.9426002/94‑1 (MQ=60)
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTAC                                                                                               <  SRR4302540.8554831/94‑1 (MQ=60)
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTAC                                                                                               <  SRR4302540.1325501/94‑1 (MQ=60)
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTAC                                                                                               <  SRR4302540.990412/94‑1 (MQ=60)
 TATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACG                                                                                              >  SRR4302540.9385152/1‑94 (MQ=60)
  ATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGC                                                                                             >  SRR4302540.8853098/1‑94 (MQ=60)
   TTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCT                                                                                            <  SRR4302540.5831934/94‑1 (MQ=60)
     GGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGA                                                                                          <  SRR4302540.1739641/94‑1 (MQ=60)
      GTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGAT                                                                                         >  SRR4302540.6985505/1‑94 (MQ=60)
       TGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGCCTGGGGCACTCAGTTCGGTACGCTGCTT                                                                                        >  SRR4302540.6361092/1‑94 (MQ=60)
       TGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATT                                                                                        >  SRR4302540.7575575/1‑94 (MQ=60)
       TGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATT                                                                                        >  SRR4302540.6819304/1‑94 (MQ=60)
       TGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATT                                                                                        >  SRR4302540.7575574/1‑94 (MQ=60)
        GACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTG                                                                                       <  SRR4302540.9880286/94‑1 (MQ=60)
        GACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTG                                                                                       <  SRR4302540.6646204/94‑1 (MQ=60)
         ACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGC                                                                                      >  SRR4302540.1750306/1‑94 (MQ=60)
           GCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCAT                                                                                    <  SRR4302540.4368809/94‑1 (MQ=60)
           GCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCAT                                                                                    >  SRR4302540.5016318/1‑94 (MQ=60)
           GCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCAT                                                                                    >  SRR4302540.5016319/1‑94 (MQ=60)
            CAGCAGTGCGTGATCTTGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACAACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATG                                                                                   <  SRR4302540.1759964/94‑1 (MQ=60)
             AGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGG                                                                                  >  SRR4302540.1284802/1‑94 (MQ=60)
                AGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTG                                                                               >  SRR4302540.5661267/1‑94 (MQ=60)
                AGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTG                                                                               >  SRR4302540.9590455/1‑94 (MQ=60)
                 GTGCGTGCTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGG                                                                              <  SRR4302540.605892/94‑1 (MQ=60)
                 GTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGG                                                                              >  SRR4302540.8186017/1‑94 (MQ=60)
                   GCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAA                                                                            <  SRR4302540.5315886/94‑1 (MQ=60)
                   GCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAA                                                                            <  SRR4302540.9919464/94‑1 (MQ=60)
                     GTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAA                                                                          >  SRR4302540.7409646/1‑94 (MQ=60)
                      TACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAG                                                                         <  SRR4302540.9924716/94‑1 (MQ=60)
                       ACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGC                                                                        >  SRR4302540.4404859/1‑94 (MQ=60)
                       ACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGC                                                                        <  SRR4302540.2391785/94‑1 (MQ=60)
                        CTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCA                                                                       >  SRR4302540.4126184/1‑94 (MQ=60)
                          CTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGC                                                                     <  SRR4302540.10145758/94‑1 (MQ=60)
                          CTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGC                                                                     <  SRR4302540.8922634/94‑1 (MQ=60)
                           TGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCA                                                                    <  SRR4302540.1191330/94‑1 (MQ=60)
                           TGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCA                                                                    <  SRR4302540.9523996/94‑1 (MQ=60)
                           TGGAGGTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCA                                                                    <  SRR4302540.8057800/94‑1 (MQ=60)
                            TGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAG                                                                   <  SRR4302540.6278218/94‑1 (MQ=60)
                            GGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAG                                                                   >  SRR4302540.1854135/1‑94 (MQ=60)
                            GGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAG                                                                   <  SRR4302540.3818814/94‑1 (MQ=60)
                            GGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAG                                                                   >  SRR4302540.8888590/1‑94 (MQ=60)
                            GGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAG                                                                   >  SRR4302540.2433805/1‑94 (MQ=60)
                             GAGTGCCTCGGTCACAAAGTGATTCGCGAAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGC                                                                  <  SRR4302540.877192/94‑1 (MQ=60)
                               GTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAG                                                                >  SRR4302540.7233847/1‑94 (MQ=60)
                                TTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGG                                                               <  SRR4302540.2385236/94‑1 (MQ=60)
                                   CTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAA                                                            >  SRR4302540.8410063/1‑94 (MQ=60)
                                    TCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAA                                                           <  SRR4302540.1617965/94‑1 (MQ=60)
                                     CGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAAC                                                          <  SRR4302540.7797876/94‑1 (MQ=60)
                                     CGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAAC                                                          <  SRR4302540.3298924/94‑1 (MQ=60)
                                     CGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAAC                                                          >  SRR4302540.3224626/1‑94 (MQ=60)
                                     CGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAAC                                                          <  SRR4302540.9341625/94‑1 (MQ=60)
                                       GTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGC                                                        <  SRR4302540.622792/94‑1 (MQ=60)
                                       GTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGC                                                        <  SRR4302540.10007567/94‑1 (MQ=60)
                                        TCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCC                                                       <  SRR4302540.279890/94‑1 (MQ=60)
                                          ACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGG                                                     <  SRR4302540.9970847/94‑1 (MQ=60)
                                           CAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGT                                                    <  SRR4302540.1250767/94‑1 (MQ=60)
                                            AAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTG                                                   >  SRR4302540.1610269/1‑94 (MQ=60)
                                            AAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTG                                                   >  SRR4302540.995589/1‑94 (MQ=60)
                                             AAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGA                                                  >  SRR4302540.6510913/1‑94 (MQ=60)
                                             AAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGA                                                  >  SRR4302540.8965806/1‑94 (MQ=60)
                                              AGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAA                                                 >  SRR4302540.6238918/1‑94 (MQ=60)
                                              AGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAA                                                 >  SRR4302540.6238920/1‑94 (MQ=60)
                                              AGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAA                                                 <  SRR4302540.4262189/94‑1 (MQ=60)
                                              AGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAA                                                 <  SRR4302540.9716724/94‑1 (MQ=60)
                                              AGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAA                                                 <  SRR4302540.9716723/94‑1 (MQ=60)
                                                TGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAAT                                               >  SRR4302540.6229339/1‑94 (MQ=60)
                                                TGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAAT                                               <  SRR4302540.2756457/94‑1 (MQ=60)
                                                TGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAAT                                               <  SRR4302540.5668526/94‑1 (MQ=60)
                                                GGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAAT                                               <  SRR4302540.3144961/94‑1 (MQ=60)
                                                  ATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGG                                             >  SRR4302540.5814592/1‑94 (MQ=60)
                                                   TTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGA                                            >  SRR4302540.6345413/1‑94 (MQ=60)
                                                     CGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGC                                          >  SRR4302540.8184615/1‑94 (MQ=60)
                                                      GCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCT                                         <  SRR4302540.8280660/94‑1 (MQ=60)
                                                       CGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTG                                        <  SRR4302540.410945/94‑1 (MQ=60)
                                                       CGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTG                                        <  SRR4302540.5740244/94‑1 (MQ=60)
                                                          AAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCT                                     >  SRR4302540.8502735/1‑94 (MQ=60)
                                                          AAACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCT                                     >  SRR4302540.2917665/1‑94 (MQ=60)
                                                           AACCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTG                                    <  SRR4302540.6727701/94‑1 (MQ=60)
                                                             CCACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGAC                                  <  SRR4302540.5516420/94‑1 (MQ=60)
                                                              CACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACC                                 <  SRR4302540.5915945/94‑1 (MQ=60)
                                                               ACGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCT                                >  SRR4302540.9316424/1‑94 (MQ=60)
                                                                CGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTT                               <  SRR4302540.10128048/94‑1 (MQ=60)
                                                                CGTCGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTT                               <  SRR4302540.286092/94‑1 (MQ=60)
                                                                   CGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAA                            >  SRR4302540.8498628/1‑94 (MQ=60)
                                                                   CGGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAA                            >  SRR4302540.2793600/1‑94 (MQ=60)
                                                                    GGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGTTGGAAAAGCAGCAGGAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAG                           <  SRR4302540.1209913/94‑1 (MQ=60)
                                                                    GGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAG                           <  SRR4302540.8465540/94‑1 (MQ=60)
                                                                    GGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAG                           >  SRR4302540.2281167/1‑94 (MQ=60)
                                                                    GGCGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAG                           <  SRR4302540.9039933/94‑1 (MQ=60)
                                                                      CGACTGGGGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGT                         >  SRR4302540.1419718/1‑94 (MQ=60)
                                                                             GGCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACC                  <  SRR4302540.8043394/94‑1 (MQ=60)
                                                                              GCACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCG                 <  SRR4302540.3998721/94‑1 (MQ=60)
                                                                               CACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGC                >  SRR4302540.9650073/1‑94 (MQ=60)
                                                                               CACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGC                >  SRR4302540.3777959/1‑94 (MQ=60)
                                                                               CACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTAACGC                >  SRR4302540.9650072/1‑94 (MQ=60)
                                                                                ACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCG               >  SRR4302540.7371009/1‑94 (MQ=60)
                                                                                ACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCG               >  SRR4302540.1207788/1‑94 (MQ=60)
                                                                                ACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCG               <  SRR4302540.7193787/94‑1 (MQ=60)
                                                                                ACTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCG               <  SRR4302540.6056800/94‑1 (MQ=60)
                                                                                 CTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGA              >  SRR4302540.5174813/1‑94 (MQ=60)
                                                                                 CTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGA              >  SRR4302540.301633/1‑94 (MQ=60)
                                                                                 CTCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGA              >  SRR4302540.7031305/1‑94 (MQ=60)
                                                                                  TCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGAT             >  SRR4302540.1076950/1‑94 (MQ=60)
                                                                                  TCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGAT             <  SRR4302540.5670469/94‑1 (MQ=60)
                                                                                  TCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGAT             >  SRR4302540.8395518/1‑94 (MQ=60)
                                                                                  TCAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGAT             <  SRR4302540.2168997/94‑1 (MQ=60)
                                                                                   CAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATG            <  SRR4302540.916762/94‑1 (MQ=60)
                                                                                   CAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATG            >  SRR4302540.2752922/1‑94 (MQ=60)
                                                                                   CAGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGGTTCTACCGCGATG            >  SRR4302540.5885993/1‑94 (MQ=60)
                                                                                    AGTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGC           >  SRR4302540.1244880/1‑94 (MQ=60)
                                                                                     GTTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCG          <  SRR4302540.6913829/94‑1 (MQ=60)
                                                                                      TTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGA         >  SRR4302540.224267/1‑94 (MQ=60)
                                                                                      TTCGGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGA         <  SRR4302540.4380048/94‑1 (MQ=60)
                                                                                         GGTACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGAAAA      <  SRR4302540.2433981/94‑1 (MQ=60)
                                                                                           TACGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGAAAAAG    <  SRR4302540.3172614/94‑1 (MQ=60)
                                                                                             CGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGAAAAAGCA  <  SRR4302540.8574824/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTATTGGTGACGCAGCAGTGCGTACTCTGGAGTTCCTCGGTCACAAAGTGATTCGCGCAAACCACGTCGGCGACTGGGGCACTCAGTTCGGTATGCTGATTGCATGGCTGGAAAAGCAGCAGCAGGAAAACGCCGGTGAAATGGAGCTGGCTGACCTTGAAGGTTTCTACCGCGATGCGAAAAAGCA  >  NC_000913/1958495‑1958681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑