Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,988,244 T→C T51A (ACA→GCA)  yqeK ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,988,2440TC99.9% 2485.2 / ‑5.7 761T51A (ACA→GCA) yqeKhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (382/376);  total (384/377)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01

Only 100 of 769 total aligned reads displayed.

TGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGTCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAA  >  NC_000913/2988154‑2988333
                                                                                          |                                                                                         
 gACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCa                                                                                        >  1:7476708/1‑93 (MQ=255)
 gACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCa                                                                                        <  2:1867363/93‑1 (MQ=255)
    aGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCatga                                                                                     >  1:9164347/1‑93 (MQ=255)
    aGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCatga                                                                                     <  2:2059848/93‑1 (MQ=255)
    aGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCatga                                                                                     <  1:39545/93‑1 (MQ=255)
     gATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCatgat                                                                                    >  2:9655257/1‑93 (MQ=255)
       tCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAtgt                                                                                  <  1:2288814/93‑1 (MQ=255)
       tCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAtgt                                                                                  >  1:9800743/1‑93 (MQ=255)
         gTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAtgttt                                                                                >  2:3815959/1‑92 (MQ=255)
         gTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAtgttg                                                                                >  1:9478822/1‑93 (MQ=255)
         gTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAtgttg                                                                                >  1:1450828/1‑93 (MQ=255)
          tGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAtgttgt                                                                               >  2:455223/1‑93 (MQ=255)
           gagaTATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATgttgtt                                                                              <  2:408172/93‑1 (MQ=255)
           gagaTATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATgttgtt                                                                              <  2:9231119/93‑1 (MQ=255)
            agaTATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGttt                                                                             >  2:566088/1‑93 (MQ=255)
             gaTATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTg                                                                            >  2:5928643/1‑93 (MQ=255)
             gaTATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTg                                                                            >  2:2412799/1‑93 (MQ=255)
             gaTATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTg                                                                            >  2:4852136/1‑93 (MQ=255)
                ataACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGt                                                                         <  2:2754129/93‑1 (MQ=255)
                 taACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTg                                                                        >  2:2636321/1‑93 (MQ=255)
                 taACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTg                                                                        >  1:7947509/1‑93 (MQ=255)
                   aCTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTgag                                                                      >  2:4350931/1‑93 (MQ=255)
                   aCTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTgag                                                                      <  2:1123285/93‑1 (MQ=255)
                   aCTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTgag                                                                      >  2:3042752/1‑93 (MQ=255)
                    cTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTgaga                                                                     <  2:5049061/93‑1 (MQ=255)
                     tGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGaa                                                                    <  1:1885089/93‑1 (MQ=255)
                      gTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAAc                                                                   <  2:6312177/93‑1 (MQ=255)
                       tttttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACa                                                                  <  1:3633914/93‑1 (MQ=255)
                         tttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACAtt                                                                <  1:5624930/93‑1 (MQ=255)
                         tttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACAtt                                                                >  1:6071296/1‑93 (MQ=255)
                         tttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACAtt                                                                >  1:6616557/1‑93 (MQ=255)
                         tttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACAtt                                                                <  1:2911987/93‑1 (MQ=255)
                          ttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATtc                                                               <  2:8650183/93‑1 (MQ=255)
                          ttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATtc                                                               >  2:5824156/1‑93 (MQ=255)
                          ttAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATtc                                                               >  2:7004679/1‑93 (MQ=255)
                           tAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATtct                                                              <  1:6858480/93‑1 (MQ=255)
                            aaCTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATtctc                                                             <  1:8410139/93‑1 (MQ=255)
                             aCTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGATGTTTGCGTGAGAACATTCTCa                                                            <  2:6407101/93‑1 (MQ=255)
                               tttACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGc                                                          >  2:7393654/1‑93 (MQ=255)
                                ttACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCa                                                         <  1:5290746/93‑1 (MQ=255)
                                ttACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCa                                                         <  1:1332593/93‑1 (MQ=255)
                                 tACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAt                                                        <  2:9828104/93‑1 (MQ=255)
                                 tACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAt                                                        >  1:5208293/1‑93 (MQ=255)
                                  tctctTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAtt                                                       <  2:7966402/92‑1 (MQ=255)
                                  aCTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAtt                                                       >  2:5174686/1‑93 (MQ=255)
                                   ctctTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTa                                                      >  2:6747552/1‑93 (MQ=255)
                                   ctctTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTa                                                      >  1:811098/1‑93 (MQ=255)
                                    tctTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTaa                                                     >  1:4804360/1‑93 (MQ=255)
                                     ctTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAg                                                    <  2:4180139/93‑1 (MQ=255)
                                     ctTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAg                                                    <  1:4635351/93‑1 (MQ=255)
                                      tttACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAgg                                                   <  2:8320982/93‑1 (MQ=255)
                                        tACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGaa                                                 <  2:9034491/93‑1 (MQ=255)
                                        tACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGaa                                                 >  1:2016536/1‑93 (MQ=255)
                                          cGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAAtt                                               <  1:6301950/93‑1 (MQ=255)
                                           gTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAAttt                                              <  1:7074167/93‑1 (MQ=255)
                                            ttGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAAtttt                                             <  1:1716984/93‑1 (MQ=255)
                                               aCTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAAttttttt                                          >  1:9650529/1‑93 (MQ=255)
                                               aCTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAAttttttt                                          <  1:5770871/93‑1 (MQ=255)
                                               aCTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAAttttttt                                          <  2:3428425/93‑1 (MQ=255)
                                                cTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTa                                         >  2:825004/1‑93 (MQ=255)
                                                cTTTATTGACAGAAGTAACATTCACATATCTTGAATTTAATGCCCATGATGTTCTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTa                                         <  1:7313595/93‑1 (MQ=255)
                                                 tttATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCCGCCTTAAGGACTTTTTTTaa                                        >  1:6179172/1‑93 (MQ=255)
                                                  ttATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAAc                                       >  1:9354265/1‑93 (MQ=255)
                                                  ttATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAAc                                       >  2:7138210/1‑93 (MQ=255)
                                                    aTTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACgg                                     >  2:8890589/1‑93 (MQ=255)
                                                        aCAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATc                                 >  2:5516463/1‑93 (MQ=255)
                                                          aGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCt                               <  2:3295471/93‑1 (MQ=255)
                                                          aGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCt                               >  1:7787632/1‑93 (MQ=255)
                                                          aGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCt                               <  2:7779791/93‑1 (MQ=255)
                                                           gAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCtt                              <  2:6040772/93‑1 (MQ=255)
                                                           gAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCtt                              >  1:1789929/1‑93 (MQ=255)
                                                           gAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCtt                              <  1:2332262/93‑1 (MQ=255)
                                                           gAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCtt                              <  1:1181613/93‑1 (MQ=255)
                                                            aaTTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTg                             <  1:4123563/93‑1 (MQ=255)
                                                            aaTTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTg                             >  1:9062946/1‑93 (MQ=255)
                                                              ttAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGt                           >  1:2479587/1‑93 (MQ=255)
                                                              ttAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTAAGCATTAAGGAATTTTTTTAACGGAATCCTTGGt                           <  2:5287967/93‑1 (MQ=255)
                                                                aaCATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGttt                         >  2:6183532/1‑93 (MQ=255)
                                                                 aCATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTc                        >  2:3675699/1‑93 (MQ=255)
                                                                 aCATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTc                        <  1:71794/93‑1 (MQ=255)
                                                                  cATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCt                       <  2:4704211/93‑1 (MQ=255)
                                                                   aTTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCtt                      <  2:288086/93‑1 (MQ=255)
                                                                   aTTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCtt                      <  1:8568100/93‑1 (MQ=255)
                                                                    ttCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCttt                     >  1:3483580/1‑93 (MQ=255)
                                                                     tCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCtttt                    <  2:7594734/93‑1 (MQ=255)
                                                                      cacaTATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCttttt                   >  1:4348225/1‑93 (MQ=255)
                                                                       acaTATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTc                  <  2:1485154/93‑1 (MQ=255)
                                                                         atatCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGa                >  2:223824/1‑93 (MQ=255)
                                                                          tatCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAg               >  1:2801444/1‑93 (MQ=255)
                                                                            tCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTc             >  1:5008673/1‑93 (MQ=255)
                                                                             cTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTcc            <  1:1590936/93‑1 (MQ=255)
                                                                             cTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTcc            <  2:875623/93‑1 (MQ=255)
                                                                              ttGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCg           >  1:3261896/1‑93 (MQ=255)
                                                                               tGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGa          <  1:10046933/93‑1 (MQ=255)
                                                                               tGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGa          <  1:8936150/93‑1 (MQ=255)
                                                                                gAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGaa         <  2:9439586/93‑1 (MQ=255)
                                                                                 aaTTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAt        <  2:173742/93‑1 (MQ=255)
                                                                                  aTTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAtt       <  1:3060187/93‑1 (MQ=255)
                                                                                  aTTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAtt       >  1:875180/1‑93 (MQ=255)
                                                                                   tttAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAttt      >  2:8484700/1‑93 (MQ=255)
                                                                                          |                                                                                         
TGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGTCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAA  >  NC_000913/2988154‑2988333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 399 total aligned reads displayed.
CATTGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGTCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATC  >  NC_000913/2988151‑2988337
                                                                                             |                                                                                             
CATTGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGC                                                                                               >  SRR4302540.777953/1‑94 (MQ=60)
 ATTGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGCCTTTATTGACAGAATTACCATTCACATACATTGACTTTAATGCC                                                                                              >  SRR4302540.2879517/1‑94 (MQ=60)
 ATTGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCC                                                                                              >  SRR4302540.4033476/1‑94 (MQ=60)
 ATTGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCC                                                                                              >  SRR4302540.9152414/1‑94 (MQ=60)
  TTGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAATATTCACATATCTTACATTTAATGCCA                                                                                            >  SRR4302540.3553800/1‑94 (MQ=60)
    GACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATTCCCAT                                                                                           <  SRR4302540.1603663/94‑1 (MQ=60)
     ACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATG                                                                                          >  SRR4302540.5731276/1‑94 (MQ=60)
     ACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATG                                                                                          <  SRR4302540.1637926/94‑1 (MQ=60)
      CAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGCATTAACATTCACATATCTTGAATTTAATGCCCATGA                                                                                         >  SRR4302540.148123/1‑94 (MQ=60)
      CAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGA                                                                                         >  SRR4302540.9274314/1‑94 (MQ=60)
       AGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAT                                                                                        <  SRR4302540.39953/94‑1 (MQ=60)
       AGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAT                                                                                        >  SRR4302540.7518497/1‑94 (MQ=60)
       AGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGAT                                                                                        >  SRR4302540.7503714/1‑94 (MQ=60)
        GATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATG                                                                                       <  SRR4302540.9457908/94‑1 (MQ=60)
         ATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGT                                                                                      >  SRR4302540.9192156/1‑94 (MQ=60)
         ATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGT                                                                                      >  SRR4302540.3522425/1‑94 (MQ=60)
          TCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTT                                                                                     <  SRR4302540.3067277/94‑1 (MQ=60)
          TCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTT                                                                                     <  SRR4302540.2329937/94‑1 (MQ=60)
          TCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTT                                                                                     >  SRR4302540.1497508/1‑94 (MQ=60)
           CGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTG                                                                                    <  SRR4302540.4810135/94‑1 (MQ=60)
           CGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTG                                                                                    >  SRR4302540.6221650/1‑94 (MQ=60)
           CGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTG                                                                                    <  SRR4302540.2534802/94‑1 (MQ=60)
            GTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGT                                                                                   >  SRR4302540.36461/1‑94 (MQ=60)
              GAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTT                                                                                 <  SRR4302540.5281381/94‑1 (MQ=60)
              GAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTT                                                                                 >  SRR4302540.4857072/1‑94 (MQ=60)
              GAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTT                                                                                 >  SRR4302540.2924935/1‑94 (MQ=60)
                GATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGC                                                                               >  SRR4302540.1132560/1‑94 (MQ=60)
                GATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGC                                                                               >  SRR4302540.203585/1‑94 (MQ=60)
                GATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGC                                                                               >  SRR4302540.3094338/1‑94 (MQ=60)
                GATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGC                                                                               <  SRR4302540.3723917/94‑1 (MQ=60)
                 ATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCG                                                                              >  SRR4302540.3523675/1‑94 (MQ=60)
                 ATATAACTGTGTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCG                                                                              <  SRR4302540.5531036/94‑1 (MQ=60)
                  TATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGT                                                                             >  SRR4302540.2448456/1‑94 (MQ=60)
                  TATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGT                                                                             <  SRR4302540.6284846/94‑1 (MQ=60)
                  TATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGT                                                                             <  SRR4302540.2182968/94‑1 (MQ=60)
                   ATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTG                                                                            >  SRR4302540.8199466/1‑94 (MQ=60)
                   ATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTG                                                                            >  SRR4302540.8040152/1‑94 (MQ=60)
                    TAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGA                                                                           >  SRR4302540.4946876/1‑94 (MQ=60)
                     AACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAG                                                                          >  SRR4302540.5267466/1‑94 (MQ=60)
                     AACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAG                                                                          >  SRR4302540.9757027/1‑94 (MQ=60)
                     AACTGTTTTTAACTTTACTCTTTACGGTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAG                                                                          <  SRR4302540.8577180/94‑1 (MQ=60)
                      ACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGA                                                                         >  SRR4302540.4588291/1‑94 (MQ=60)
                       CTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAA                                                                        <  SRR4302540.3710867/94‑1 (MQ=60)
                        TGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTGACATATCTTGAATTTAATGCTCATGATGTTGTTTGCGTGAGAAC                                                                       >  SRR4302540.1915405/1‑94 (MQ=60)
                        TGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAAC                                                                       >  SRR4302540.9901917/1‑94 (MQ=60)
                        TGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAAC                                                                       <  SRR4302540.1946761/94‑1 (MQ=60)
                         GTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACA                                                                      <  SRR4302540.308511/94‑1 (MQ=60)
                           TTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATT                                                                    >  SRR4302540.7925237/1‑94 (MQ=60)
                           TTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATT                                                                    >  SRR4302540.6138797/1‑94 (MQ=60)
                           TTTTAACTTTACTCTGTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATT                                                                    <  SRR4302540.3804734/94‑1 (MQ=60)
                            TTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTC                                                                   <  SRR4302540.5686833/94‑1 (MQ=60)
                            TTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTC                                                                   >  SRR4302540.743894/1‑94 (MQ=60)
                            TTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTC                                                                   <  SRR4302540.2784854/94‑1 (MQ=60)
                            TTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTC                                                                   >  SRR4302540.1725219/1‑94 (MQ=60)
                             TTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCT                                                                  >  SRR4302540.1546074/1‑94 (MQ=60)
                             TTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCT                                                                  <  SRR4302540.6651581/94‑1 (MQ=60)
                              TAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTC                                                                 >  SRR4302540.1799076/1‑94 (MQ=60)
                              TAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTC                                                                 >  SRR4302540.5638779/1‑94 (MQ=60)
                              TAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTC                                                                 <  SRR4302540.8618128/94‑1 (MQ=60)
                              TAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTC                                                                 <  SRR4302540.6934484/94‑1 (MQ=60)
                              TAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTC                                                                 >  SRR4302540.5248967/1‑94 (MQ=60)
                              TAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTC                                                                 <  SRR4302540.8096746/94‑1 (MQ=60)
                              TAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTC                                                                 <  SRR4302540.890469/94‑1 (MQ=60)
                               AACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCA                                                                >  SRR4302540.9201353/1‑94 (MQ=60)
                               AACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCA                                                                <  SRR4302540.4608774/94‑1 (MQ=60)
                               AACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCA                                                                >  SRR4302540.8865105/1‑94 (MQ=60)
                                ACTTTACTCTTTACGTTGACTNTNTTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAG                                                               <  SRR4302540.2579723/94‑1 (MQ=60)
                                 CTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGC                                                              <  SRR4302540.9629347/94‑1 (MQ=60)
                                  TTTACTCTTTACGTTTACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCA                                                             <  SRR4302540.9739231/94‑1 (MQ=60)
                                  TTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCA                                                             >  SRR4302540.5589414/1‑94 (MQ=60)
                                   TTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAT                                                            <  SRR4302540.5348583/94‑1 (MQ=60)
                                   TTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAT                                                            >  SRR4302540.587477/1‑94 (MQ=60)
                                   TTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAT                                                            >  SRR4302540.5265028/1‑94 (MQ=60)
                                   TTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCAT                                                            <  SRR4302540.968771/94‑1 (MQ=60)
                                    TACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATT                                                           >  SRR4302540.7037515/1‑94 (MQ=60)
                                    TACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATT                                                           >  SRR4302540.7847181/1‑94 (MQ=60)
                                    TACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATT                                                           <  SRR4302540.1803733/94‑1 (MQ=60)
                                    TACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATT                                                           >  SRR4302540.5260506/1‑94 (MQ=60)
                                     ACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTA                                                          >  SRR4302540.1412122/1‑94 (MQ=60)
                                     ACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTA                                                          >  SRR4302540.5966362/1‑94 (MQ=60)
                                     ACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTA                                                          >  SRR4302540.1457448/1‑94 (MQ=60)
                                      CTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAA                                                         <  SRR4302540.4320579/94‑1 (MQ=60)
                                      CTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAA                                                         >  SRR4302540.5176530/1‑94 (MQ=60)
                                      CTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAA                                                         >  SRR4302540.8331725/1‑94 (MQ=60)
                                       TCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAG                                                        <  SRR4302540.8052196/94‑1 (MQ=60)
                                        CTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGG                                                       <  SRR4302540.7965366/94‑1 (MQ=60)
                                        CTTTACGTTGACTTTATTGACAGAATTAACATCCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGG                                                       <  SRR4302540.4684983/94‑1 (MQ=60)
                                           TACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCACCATTAAGGAAT                                                    <  SRR4302540.8921322/94‑1 (MQ=60)
                                             CGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTT                                                  >  SRR4302540.685941/1‑94 (MQ=60)
                                             CGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTT                                                  <  SRR4302540.1665626/94‑1 (MQ=60)
                                             CGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTT                                                  >  SRR4302540.234405/1‑94 (MQ=60)
                                              GTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTT                                                 <  SRR4302540.7152878/94‑1 (MQ=60)
                                              GTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTT                                                 <  SRR4302540.7218462/94‑1 (MQ=60)
                                              GTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTT                                                 >  SRR4302540.2095152/1‑94 (MQ=60)
                                               TTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTT                                                >  SRR4302540.3008857/1‑94 (MQ=60)
                                               TTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTT                                                <  SRR4302540.1735521/94‑1 (MQ=60)
                                               TTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTT                                                >  SRR4302540.6697863/1‑94 (MQ=60)
                                                TGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTT                                               <  SRR4302540.6358576/94‑1 (MQ=60)
                                                 GACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTT                                              >  SRR4302540.483958/1‑94 (MQ=60)
                                                 GACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTT                                              <  SRR4302540.166120/94‑1 (MQ=60)
                                                 GACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTT                                              >  SRR4302540.1351024/1‑94 (MQ=60)
                                                  ACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTA                                             <  SRR4302540.5834607/94‑1 (MQ=60)
                                                  ACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTA                                             >  SRR4302540.931788/1‑94 (MQ=60)
                                                  ACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTA                                             <  SRR4302540.8166006/94‑1 (MQ=60)
                                                  ACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTA                                             >  SRR4302540.4229760/1‑94 (MQ=60)
                                                   CTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCCGCCTTAAGGACTTTTTTTAA                                            >  SRR4302540.6248006/1‑94 (MQ=60)
                                                   CTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAATGAATTTTTTTAA                                            >  SRR4302540.2894420/1‑94 (MQ=60)
                                                   CTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAA                                            >  SRR4302540.3983140/1‑94 (MQ=60)
                                                   CTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAA                                            >  SRR4302540.4088817/1‑94 (MQ=60)
                                                   CTTTATTGACAGAAGTAACATTCACATATCTTGAATTTAATGCCCATGATGTTCTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAA                                            <  SRR4302540.7395259/94‑1 (MQ=60)
                                                    TTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAAC                                           >  SRR4302540.9465678/1‑94 (MQ=60)
                                                    TTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAAC                                           >  SRR4302540.9083587/1‑94 (MQ=60)
                                                    TTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAAC                                           <  SRR4302540.677430/94‑1 (MQ=60)
                                                     TTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACG                                          >  SRR4302540.5710064/1‑94 (MQ=60)
                                                     TTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACG                                          <  SRR4302540.8299686/94‑1 (MQ=60)
                                                     TTATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACG                                          <  SRR4302540.6307938/94‑1 (MQ=60)
                                                      TATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGG                                         >  SRR4302540.9449805/1‑94 (MQ=60)
                                                       ATTGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGA                                        >  SRR4302540.6406187/1‑94 (MQ=60)
                                                         TGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAAT                                      <  SRR4302540.9499898/94‑1 (MQ=60)
                                                         TGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAAT                                      <  SRR4302540.4237986/94‑1 (MQ=60)
                                                         TGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAAT                                      >  SRR4302540.4673569/1‑94 (MQ=60)
                                                         TGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAAT                                      >  SRR4302540.4155925/1‑94 (MQ=60)
                                                         TGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAAT                                      <  SRR4302540.8716878/94‑1 (MQ=60)
                                                         TGACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAAT                                      >  SRR4302540.9806955/1‑94 (MQ=60)
                                                           ACAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCC                                    <  SRR4302540.7170919/94‑1 (MQ=60)
                                                            CAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCT                                   <  SRR4302540.2309319/94‑1 (MQ=60)
                                                            CAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCT                                   >  SRR4302540.6633893/1‑94 (MQ=60)
                                                            CAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCT                                   >  SRR4302540.7878663/1‑94 (MQ=60)
                                                            CAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCT                                   <  SRR4302540.1835659/94‑1 (MQ=60)
                                                            CAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCT                                   >  SRR4302540.1849397/1‑94 (MQ=60)
                                                            CAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCT                                   >  SRR4302540.3117494/1‑94 (MQ=60)
                                                            CAGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCT                                   <  SRR4302540.7366752/94‑1 (MQ=60)
                                                             AGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTT                                  <  SRR4302540.6000306/94‑1 (MQ=60)
                                                             AGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTT                                  >  SRR4302540.8947978/1‑94 (MQ=60)
                                                             AGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTT                                  >  SRR4302540.1809383/1‑94 (MQ=60)
                                                             AGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTT                                  >  SRR4302540.1786590/1‑94 (MQ=60)
                                                             AGAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCATT                                  >  SRR4302540.1115367/1‑94 (MQ=60)
                                                              GAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTG                                 <  SRR4302540.23733/94‑1 (MQ=60)
                                                              GAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTG                                 >  SRR4302540.9059960/1‑94 (MQ=60)
                                                              GAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTG                                 <  SRR4302540.1444106/94‑1 (MQ=60)
                                                              GAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTG                                 >  SRR4302540.4946311/1‑94 (MQ=60)
                                                              GAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTG                                 >  SRR4302540.9171763/1‑94 (MQ=60)
                                                              GAATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTG                                 <  SRR4302540.2357392/94‑1 (MQ=60)
                                                               AATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGG                                <  SRR4302540.7322030/94‑1 (MQ=60)
                                                               AATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGG                                <  SRR4302540.9269613/94‑1 (MQ=60)
                                                                ATTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGT                               >  SRR4302540.2506292/1‑94 (MQ=60)
                                                                 TTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTT                              >  SRR4302540.2717956/1‑94 (MQ=60)
                                                                 TTAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTT                              >  SRR4302540.7745190/1‑94 (MQ=60)
                                                                  TAACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTT                             <  SRR4302540.1218212/94‑1 (MQ=60)
                                                                    ACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCT                           >  SRR4302540.2423992/1‑94 (MQ=60)
                                                                    ACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCT                           <  SRR4302540.1173261/94‑1 (MQ=60)
                                                                    ACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCT                           <  SRR4302540.72528/94‑1 (MQ=60)
                                                                    ACATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCT                           <  SRR4302540.2277939/94‑1 (MQ=60)
                                                                     CATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTT                          <  SRR4302540.7138328/94‑1 (MQ=60)
                                                                      ATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTT                         >  SRR4302540.10018204/1‑94 (MQ=60)
                                                                      ATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTT                         >  SRR4302540.3521502/1‑94 (MQ=60)
                                                                      ATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTT                         <  SRR4302540.8667612/94‑1 (MQ=60)
                                                                      ATTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTT                         >  SRR4302540.7008065/1‑94 (MQ=60)
                                                                       TTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTT                        <  SRR4302540.8551/94‑1 (MQ=60)
                                                                       TTCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTT                        >  SRR4302540.340225/1‑94 (MQ=60)
                                                                        TCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGTAATCCTTGGTTTCTTTTT                       <  SRR4302540.8809301/94‑1 (MQ=60)
                                                                        TCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTT                       >  SRR4302540.4395530/1‑94 (MQ=60)
                                                                        TCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTT                       >  SRR4302540.327065/1‑94 (MQ=60)
                                                                        TCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTT                       <  SRR4302540.7155594/94‑1 (MQ=60)
                                                                        TCACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTT                       <  SRR4302540.303590/94‑1 (MQ=60)
                                                                         CACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTG                      >  SRR4302540.40551/1‑94 (MQ=60)
                                                                          ACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCG                     >  SRR4302540.8008985/1‑94 (MQ=60)
                                                                          ACATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCG                     >  SRR4302540.5289501/1‑94 (MQ=60)
                                                                            ATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAG                   <  SRR4302540.6234456/94‑1 (MQ=60)
                                                                            ATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAG                   <  SRR4302540.1318209/94‑1 (MQ=60)
                                                                            ATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAG                   >  SRR4302540.10030825/1‑94 (MQ=60)
                                                                            ATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAG                   <  SRR4302540.331589/94‑1 (MQ=60)
                                                                            ATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAG                   <  SRR4302540.9849448/94‑1 (MQ=60)
                                                                            ATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAG                   >  SRR4302540.7583889/1‑94 (MQ=60)
                                                                            ATATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAG                   >  SRR4302540.2831702/1‑94 (MQ=60)
                                                                             TATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGT                  >  SRR4302540.1979278/1‑94 (MQ=60)
                                                                             TATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGT                  >  SRR4302540.6587265/1‑94 (MQ=60)
                                                                              ATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTC                 <  SRR4302540.5778283/94‑1 (MQ=60)
                                                                              ATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTC                 >  SRR4302540.5062911/1‑94 (MQ=60)
                                                                              ATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTC                 >  SRR4302540.3200949/1‑94 (MQ=60)
                                                                              ATCTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTC                 <  SRR4302540.8449735/94‑1 (MQ=60)
                                                                              ATCTTGAATTTAATGCCCATGATGTTGTTTGCATGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTC                 <  SRR4302540.4759881/94‑1 (MQ=60)
                                                                                CTTGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCG               >  SRR4302540.3369198/1‑94 (MQ=60)
                                                                                  TGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAA             <  SRR4302540.10163725/94‑1 (MQ=60)
                                                                                  TGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAA             <  SRR4302540.9040760/94‑1 (MQ=60)
                                                                                  TGAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAA             <  SRR4302540.6239191/94‑1 (MQ=60)
                                                                                   GAATTTAATGCCCATGATGTTGTTTGCGTGAGATCATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAT            <  SRR4302540.9825408/94‑1 (MQ=60)
                                                                                   GAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAT            >  SRR4302540.1207112/1‑94 (MQ=60)
                                                                                   GAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAT            >  SRR4302540.9532343/1‑94 (MQ=60)
                                                                                   GAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAAT            <  SRR4302540.2349031/94‑1 (MQ=60)
                                                                                   GAATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTCGGTTTCTTTTTCGAGTCCGAAT            <  SRR4302540.1239481/94‑1 (MQ=60)
                                                                                    AATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATT           >  SRR4302540.884471/1‑94 (MQ=60)
                                                                                     ATTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTT          >  SRR4302540.7336035/1‑94 (MQ=60)
                                                                                      TTTAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTA         >  SRR4302540.6903052/1‑94 (MQ=60)
                                                                                        TAATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACA       >  SRR4302540.2834975/1‑94 (MQ=60)
                                                                                         AATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAA      <  SRR4302540.9585387/94‑1 (MQ=60)
                                                                                          ATGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAAT     <  SRR4302540.1880627/94‑1 (MQ=60)
                                                                                           TGCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATA    <  SRR4302540.8519133/94‑1 (MQ=60)
                                                                                            GCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATAT   >  SRR4302540.4555759/1‑94 (MQ=60)
                                                                                            GCCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATAT   <  SRR4302540.9479128/94‑1 (MQ=60)
                                                                                             |                                                                                             
CATTGACAGATCGTGAGATATAACTGTTTTTAACTTTACTCTTTACGTTGACTTTATTGACAGAATTAACATTCACATATCTTGAATTTAATGTCCATGATGTTGTTTGCGTGAGAACATTCTCAGCATTAAGGAATTTTTTTAACGGAATCCTTGGTTTCTTTTTCGAGTCCGAATTTACAATATC  >  NC_000913/2988151‑2988337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: