Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,061,961 Δ1 bp coding (1386/1458 nt) b3876 ← putative permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,061,9590C.99.5% 2555.9 / 1.0 567coding (1388/1458 nt)b3876putative permease
Reads supporting (aligned to +/- strand):  ref base C (2/1);  new base . (315/249);  total (317/250)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 615 total aligned reads displayed.

TTTTTCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGCCCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTA  >  NC_000913/4061867‑4062047
                                                                                            |                                                                                        
   ttCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGccgt                                                                                       >  1:2245521/1‑91 (MQ=255)
    tCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGccgtt                                                                                      <  1:8067965/93‑4 (MQ=255)
    tCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGccgtt                                                                                      >  2:4228611/1‑90 (MQ=255)
      ataataAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGtttt                                                                                   >  1:7566443/1‑93 (MQ=255)
        aataaGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGtttttt                                                                                 <  2:1476617/93‑1 (MQ=255)
        aataaGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGtttttt                                                                                 <  2:8034734/93‑1 (MQ=255)
         ataaGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTttc                                                                                <  2:4663991/93‑1 (MQ=255)
          taaGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTttct                                                                               >  1:488227/1‑93 (MQ=255)
           aaGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTttctt                                                                              >  2:7043174/1‑93 (MQ=255)
            aGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTttcttc                                                                             <  1:6092153/93‑1 (MQ=255)
            aGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTttcttc                                                                             <  1:632385/93‑1 (MQ=255)
            aGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTttcttc                                                                             <  1:2436400/93‑1 (MQ=255)
             gTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTtcttct                                                                            <  2:6488366/93‑1 (MQ=255)
              tCCATTTTTTAAACGTAGTTAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGCAG‑CCGTTTTTTCTTCTg                                                                           >  2:3753723/1‑93 (MQ=255)
              tCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTg                                                                           >  2:3929908/1‑93 (MQ=255)
              tCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTg                                                                           <  1:9059592/93‑1 (MQ=255)
              tCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGAAATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTg                                                                           >  2:2337389/1‑93 (MQ=255)
                cATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTc                                                                         >  2:3480375/1‑93 (MQ=255)
                cATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACACTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTc                                                                         <  2:6378568/93‑1 (MQ=255)
                 aTTTTTTAAACGTAGGGAGGCCGCCACCCCCCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCg                                                                        >  2:7706010/1‑93 (MQ=255)
                 aTTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCg                                                                        <  2:9229209/93‑1 (MQ=255)
                 aTTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGACGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTgtgtag                                                                        >  1:2856049/1‑91 (MQ=255)
                  ttttttAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGCAG‑CCGTTTTTTCTTCTGTGGc                                                                       >  1:978246/1‑93 (MQ=255)
                  ttttttAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGc                                                                       >  2:9553822/1‑93 (MQ=255)
                  ttttttAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGc                                                                       >  2:8284115/1‑93 (MQ=255)
                  ttttttAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGc                                                                       >  1:3324834/1‑93 (MQ=255)
                   tttttAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGcc                                                                      >  2:7316145/1‑93 (MQ=255)
                    ttttAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCa                                                                     <  1:3711060/93‑1 (MQ=255)
                       tAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCAtct                                                                  >  1:3907068/1‑93 (MQ=255)
                           cGTAGGGAGGCCGCCACCCAACAGGATGGAAATAGCGGCTATTGACATTTATCACGTTACGGAAG‑CCGTCTTTTCTTCTGTCGCCATGTCttt                                                              >  1:5036229/1‑93 (MQ=255)
                            gTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTa                                                             >  2:6787101/1‑93 (MQ=255)
                            gTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTa                                                             <  1:4774831/93‑1 (MQ=255)
                            gTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTa                                                             >  2:1616904/1‑93 (MQ=255)
                              aGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAtt                                                           <  1:6040156/93‑1 (MQ=255)
                              aGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAtt                                                           >  1:7674289/1‑93 (MQ=255)
                               gggAGGCCGCCACCCACCAGGATGGAAATAGAGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGACATCTCTTTAttt                                                          >  2:1702868/1‑93 (MQ=255)
                                ggAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAtttt                                                         <  2:3321659/93‑1 (MQ=255)
                                 gAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAttttt                                                        <  2:5476835/93‑1 (MQ=255)
                                    gccgccACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCg                                                     >  2:2238824/1‑93 (MQ=255)
                                     ccgccACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCgt                                                    <  2:5730161/93‑1 (MQ=255)
                                       gccACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCgttg                                                  >  2:862174/1‑93 (MQ=255)
                                          acccaccAGGATGGAAATAGCGGCTATTGACATTTTTAACGTTACGGAAG‑CCGATTTTTCTTCTGGCGCCATCTCTTTATTTTTCCgttggtt                                               >  2:6242858/1‑93 (MQ=255)
                                             caccaGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGAt                                            >  1:4164653/1‑93 (MQ=255)
                                                caGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTc                                         <  1:5385022/93‑1 (MQ=255)
                                                caGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTc                                         >  1:8701984/1‑93 (MQ=255)
                                                 aGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTcc                                        >  1:9208664/1‑93 (MQ=255)
                                                  ggATGGAAATAGCGTCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCt                                       <  2:7860579/93‑1 (MQ=255)
                                                  ggATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCt                                       >  2:2085014/1‑93 (MQ=255)
                                                  ggATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCt                                       >  1:7757697/1‑93 (MQ=255)
                                                    aTGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCa                                     >  2:2989887/1‑93 (MQ=255)
                                                    aTGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCa                                     >  1:4937320/1‑93 (MQ=255)
                                                    aTGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCa                                     <  1:7492592/93‑1 (MQ=255)
                                                    aTGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCa                                     >  1:4516751/1‑93 (MQ=255)
                                                    aTGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCa                                     <  1:9450341/93‑1 (MQ=255)
                                                     tGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCaa                                    <  1:3815166/93‑1 (MQ=255)
                                                      ggAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCaat                                   >  2:4028733/1‑93 (MQ=255)
                                                       gAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCaata                                  >  1:3552428/1‑93 (MQ=255)
                                                       gAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCaata                                  >  1:8398545/1‑93 (MQ=255)
                                                        aaaTAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCaataa                                 <  2:5869888/93‑1 (MQ=255)
                                                        aaaTAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCaataa                                 <  1:3107706/93‑1 (MQ=255)
                                                          aTAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATc                               >  2:2491834/1‑93 (MQ=255)
                                                           tAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCa                              <  2:4542065/93‑1 (MQ=255)
                                                            aGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCaa                             <  1:5196360/93‑1 (MQ=255)
                                                             gCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTTTCGCCATCTCTTTATTTTTGCGTTGGTTTATTTCCTCAATCATCAAt                            >  2:7504058/1‑93 (MQ=255)
                                                             gCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAAt                            <  2:4768857/93‑1 (MQ=255)
                                                              gggCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATg                           <  1:695906/92‑1 (MQ=255)
                                                               ggCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGc                          >  1:2030996/1‑93 (MQ=255)
                                                                gCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCa                         <  2:2807196/93‑1 (MQ=255)
                                                                gCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCa                         <  1:8338602/93‑1 (MQ=255)
                                                                   aTTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAc                      <  2:4462285/93‑1 (MQ=255)
                                                                   aTTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAc                      >  1:182615/1‑93 (MQ=255)
                                                                   aTTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAc                      <  1:7344269/93‑1 (MQ=255)
                                                                   aTTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAc                      >  2:5075703/1‑93 (MQ=255)
                                                                   aTTGACATTTATAACGTTACGGAAG‑CCGCTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATCATCAATGCAAAc                      >  1:1387204/1‑93 (MQ=255)
                                                                    ttGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAcc                     >  1:4038765/1‑93 (MQ=255)
                                                                    ttGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAcc                     >  2:9009675/1‑93 (MQ=255)
                                                                    ttGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAcc                     >  2:887209/1‑93 (MQ=255)
                                                                    ttGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAcc                     >  1:66964/1‑93 (MQ=255)
                                                                     tGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCg                    <  2:9636239/93‑1 (MQ=255)
                                                                     tGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCg                    <  2:3131191/93‑1 (MQ=255)
                                                                      gACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGt                   <  2:2700328/93‑1 (MQ=255)
                                                                       aCATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGtt                  <  1:3475237/93‑1 (MQ=255)
                                                                        cATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGttt                 >  2:5554240/1‑93 (MQ=255)
                                                                         aTTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGtttt                <  1:5711112/93‑1 (MQ=255)
                                                                          tttATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGttttt               <  1:4268300/93‑1 (MQ=255)
                                                                           ttATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTc              <  1:5507495/93‑1 (MQ=255)
                                                                           ttATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTc              >  2:8417208/1‑93 (MQ=255)
                                                                            tataACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCa             <  2:1211720/93‑1 (MQ=255)
                                                                             ataACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCAt            <  1:1103716/93‑1 (MQ=255)
                                                                             ataACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCAt            <  1:5076697/93‑1 (MQ=255)
                                                                              taACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCAtt           <  2:7404224/93‑1 (MQ=255)
                                                                              taACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCAtt           <  1:9612016/93‑1 (MQ=255)
                                                                               aaCGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTg          <  1:9942941/93‑1 (MQ=255)
                                                                                aCGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGa         <  2:664207/93‑1 (MQ=255)
                                                                                aCGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGa         <  1:1167383/93‑1 (MQ=255)
                                                                                aCGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGa         >  2:5232037/1‑93 (MQ=255)
                                                                                  gTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAgt       >  2:1800495/1‑93 (MQ=255)
                                                                                   ttACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAgtg      >  2:355026/1‑93 (MQ=255)
                                                                                   ttACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAgtg      <  2:489297/93‑1 (MQ=255)
                                                                                      cGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAgtgtgt   <  1:6513680/93‑1 (MQ=255)
                                                                                            |                                                                                        
TTTTTCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGCCCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTA  >  NC_000913/4061867‑4062047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 320 total aligned reads displayed.
TTTTCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGCCCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAGAAT  >  NC_000913/4061868‑4062054
                                                                                             |                                                                                             
ATTTCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAAGAGCGGCTATTGACATTTATAACGTTACGGAAGCCG                                                                                               <  SRR4302540.4203107/94‑1 (MQ=60)
   TCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTT                                                                                           <  SRR4302540.6809478/94‑1 (MQ=60)
    CATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTT                                                                                          >  SRR4302540.1147740/1‑94 (MQ=60)
     ATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTT                                                                                         >  SRR4302540.5746939/1‑94 (MQ=60)
     ATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTT                                                                                         >  SRR4302540.9667391/1‑94 (MQ=60)
     ATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTT                                                                                         >  SRR4302540.4910297/1‑94 (MQ=60)
      TAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTT                                                                                        >  SRR4302540.6952604/1‑94 (MQ=60)
      TAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTT                                                                                        >  SRR4302540.5084595/1‑94 (MQ=60)
       AATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTC                                                                                       <  SRR4302540.5159985/94‑1 (MQ=60)
        ATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCT                                                                                      >  SRR4302540.3641851/1‑94 (MQ=60)
        ATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCT                                                                                      >  SRR4302540.493452/1‑94 (MQ=60)
        ATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCT                                                                                      >  SRR4302540.4159786/1‑94 (MQ=60)
        ATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCT                                                                                      >  SRR4302540.3199102/1‑94 (MQ=60)
        ATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCT                                                                                      >  SRR4302540.9842203/1‑94 (MQ=60)
        ATAAGTACATTGTTTAAACGTAGGGAGGCCGCCACGCACCAGGATGGAAATAGCGTCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCT                                                                                      <  SRR4302540.9405218/94‑1 (MQ=60)
         TAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTCTTGACATTTATAAAGTTACGGAAG‑CCGTTTTTTCTT                                                                                     <  SRR4302540.1857892/94‑1 (MQ=60)
         TAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTT                                                                                     <  SRR4302540.3841598/94‑1 (MQ=60)
           AGTCCATTTTTTAAACGTAGGGAGGCCGCCACCTACCAGGATGGAAATAGCGGCTATTGACATTTATACCGTTACGGAAG‑CCGTTTTTTCTTCT                                                                                   <  SRR4302540.9806312/94‑1 (MQ=60)
           AGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCT                                                                                   >  SRR4302540.2690448/1‑94 (MQ=60)
           AGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCT                                                                                   <  SRR4302540.2462641/94‑1 (MQ=60)
           AGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCT                                                                                   <  SRR4302540.639109/94‑1 (MQ=60)
            GTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTG                                                                                  <  SRR4302540.3881273/94‑1 (MQ=60)
            GTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTG                                                                                  <  SRR4302540.3563827/94‑1 (MQ=60)
            GTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTG                                                                                  >  SRR4302540.1880098/1‑94 (MQ=60)
            GTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTG                                                                                  >  SRR4302540.9509873/1‑94 (MQ=60)
             TCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGT                                                                                 <  SRR4302540.9168361/94‑1 (MQ=60)
             TCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGT                                                                                 >  SRR4302540.9248911/1‑94 (MQ=60)
              CCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTC                                                                                >  SRR4302540.3713852/1‑94 (MQ=60)
              CCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTC                                                                                <  SRR4302540.9782189/94‑1 (MQ=60)
              CCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTC                                                                                <  SRR4302540.7990767/94‑1 (MQ=60)
              CCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTC                                                                                <  SRR4302540.3911251/94‑1 (MQ=60)
               CATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCG                                                                               >  SRR4302540.10014852/1‑94 (MQ=60)
               CATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCG                                                                               <  SRR4302540.410027/94‑1 (MQ=60)
               CATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGACGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTGTGTAG                                                                               >  SRR4302540.2886991/1‑94 (MQ=60)
                ATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGC                                                                              >  SRR4302540.6511519/1‑94 (MQ=60)
                ATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGC                                                                              >  SRR4302540.3361308/1‑94 (MQ=60)
                ATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGC                                                                              >  SRR4302540.7796790/1‑94 (MQ=60)
                  TTTTTAAACGTAGGGAGGCCGCCACCCACCAGGCTGGAAATAGCGGCTCTTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCA                                                                            >  SRR4302540.8772893/1‑94 (MQ=60)
                   TTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCAT                                                                           <  SRR4302540.7462046/94‑1 (MQ=60)
                   TTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCAT                                                                           <  SRR4302540.6058012/94‑1 (MQ=60)
                   TTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAA‑CCCGTTTTTTCTTCTGTCGCCAT                                                                           <  SRR4302540.7219018/94‑1 (MQ=60)
                   TTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGGTATGGAAG‑CCGTTTTTTCTTCTGTCGacac                                                                           >  SRR4302540.10018955/1‑90 (MQ=60)
                    TTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATC                                                                          >  SRR4302540.5039133/1‑94 (MQ=60)
                     TTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCT                                                                         >  SRR4302540.3949423/1‑94 (MQ=60)
                     TTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCT                                                                         >  SRR4302540.2239688/1‑94 (MQ=60)
                     TTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCT                                                                         <  SRR4302540.1990077/94‑1 (MQ=60)
                        AACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTT                                                                      <  SRR4302540.9574626/94‑1 (MQ=60)
                        AACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTT                                                                      <  SRR4302540.2466858/94‑1 (MQ=60)
                        AACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTT                                                                      >  SRR4302540.4953982/1‑94 (MQ=60)
                         ACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTT                                                                     <  SRR4302540.9506195/94‑1 (MQ=60)
                         ACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTAAGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTT                                                                     >  SRR4302540.8564064/1‑94 (MQ=60)
                         ACGTAGGGAGGCCGCCACCCAACAGGATGGAAATAGCGGCTATTGACATTTATCACGTTACGGAAG‑CCGTCTTTTCTTCTGTCGCCATGTCTTT                                                                     >  SRR4302540.5090707/1‑94 (MQ=60)
                          CGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTT                                                                    >  SRR4302540.8821438/1‑94 (MQ=60)
                          CGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTA                                                                    >  SRR4302540.968881/1‑94 (MQ=60)
                          CGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTA                                                                    >  SRR4302540.4048488/1‑94 (MQ=60)
                          CGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTCTTTCTGTCGCCCTCTCTTTT                                                                    >  SRR4302540.7312922/1‑94 (MQ=60)
                           GTGGGGAGGCCGCCACCCACCAGAATGGAAATAGCGGCTATTGACATTTATAACGTTCCGGAAG‑CCGTTTTTCCTTCTGTCGCCATCTCTTTAT                                                                   <  SRR4302540.7771187/94‑1 (MQ=60)
                           GTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAT                                                                   >  SRR4302540.4321424/1‑94 (MQ=60)
                           GTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAT                                                                   <  SRR4302540.4825840/94‑1 (MQ=60)
                           GTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAT                                                                   >  SRR4302540.7360967/1‑94 (MQ=60)
                           GTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTAT                                                                   <  SRR4302540.7589016/94‑1 (MQ=60)
                           GTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGACATCTCTTTAT                                                                   <  SRR4302540.8690401/94‑1 (MQ=60)
                            TAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATT                                                                  >  SRR4302540.7760962/1‑94 (MQ=60)
                             AGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTT                                                                 <  SRR4302540.6107228/94‑1 (MQ=60)
                              GGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTT                                                                >  SRR4302540.6035537/1‑94 (MQ=60)
                               GGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTT                                                               <  SRR4302540.6141308/94‑1 (MQ=60)
                               GGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTT                                                               <  SRR4302540.3130712/94‑1 (MQ=60)
                               GGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTT                                                               <  SRR4302540.574233/94‑1 (MQ=60)
                               GGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTT                                                               <  SRR4302540.837660/94‑1 (MQ=60)
                               GGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTT                                                               >  SRR4302540.3006588/1‑94 (MQ=60)
                               GGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTT                                                               >  SRR4302540.8082342/1‑94 (MQ=60)
                                GAGGCCGCCACCCACCAGGGTGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGGTTTTTCTTCTGTCGCCATCTCTTTATTTTTG                                                              >  SRR4302540.6396723/1‑94 (MQ=60)
                                GAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTG                                                              >  SRR4302540.5315066/1‑94 (MQ=60)
                                  GGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCG                                                            <  SRR4302540.9207170/94‑1 (MQ=60)
                                   GCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGT                                                           >  SRR4302540.8394653/1‑94 (MQ=60)
                                   GCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGT                                                           <  SRR4302540.3440308/94‑1 (MQ=60)
                                    CCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTT                                                          <  SRR4302540.3913645/94‑1 (MQ=60)
                                    CCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTT                                                          <  SRR4302540.7674593/94‑1 (MQ=60)
                                     CGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTG                                                         <  SRR4302540.7995474/94‑1 (MQ=60)
                                     CGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTG                                                         <  SRR4302540.6550648/94‑1 (MQ=60)
                                     CGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTG                                                         >  SRR4302540.5715962/1‑94 (MQ=60)
                                      GCCACCCCCCAGGATGGAAATAGCGGCTATTGACCTTTATACCGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTATTTATTTTTGCGTTGG                                                        >  SRR4302540.8482094/1‑94 (MQ=60)
                                      GCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGG                                                        >  SRR4302540.8482093/1‑94 (MQ=60)
                                      GCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGG                                                        >  SRR4302540.5099125/1‑94 (MQ=60)
                                      GCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGG                                                        >  SRR4302540.6131350/1‑94 (MQ=60)
                                        CACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTT                                                      >  SRR4302540.1285373/1‑94 (MQ=60)
                                         CCCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTG                                                     <  SRR4302540.5557351/94‑1 (MQ=60)
                                          CCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGA                                                    >  SRR4302540.180816/1‑94 (MQ=60)
                                           CCACCAGGATGGAAATAGCGGCTATTGGCATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGAT                                                   >  SRR4302540.2071730/1‑94 (MQ=60)
                                           CCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGAT                                                   <  SRR4302540.5313218/94‑1 (MQ=60)
                                            CACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGCAG‑CCGTTTTTTCTTCTGTCGCTATCTCTTTATTTTTGCGTTGGTTGATT                                                  >  SRR4302540.1597971/1‑94 (MQ=60)
                                             ACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CGGTTTTTTCTTCTGTGGCCATCTCTTTATTTTTGCGTTGGTGTATTT                                                 >  SRR4302540.8061631/1‑94 (MQ=60)
                                             ACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTT                                                 >  SRR4302540.3532884/1‑94 (MQ=60)
                                             ACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTT                                                 <  SRR4302540.9881233/94‑1 (MQ=60)
                                             ACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTT                                                 >  SRR4302540.3306348/1‑94 (MQ=60)
                                               CAGGATGGAAATAGCGGCTATTTACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCC                                               <  SRR4302540.6191399/94‑1 (MQ=60)
                                               CAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCC                                               <  SRR4302540.5444251/94‑1 (MQ=60)
                                                AGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCT                                              >  SRR4302540.7848345/1‑94 (MQ=60)
                                                AGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCT                                              <  SRR4302540.1147169/94‑1 (MQ=60)
                                                AGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCT                                              >  SRR4302540.5325288/1‑94 (MQ=60)
                                                AGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCT                                              <  SRR4302540.5240399/94‑1 (MQ=60)
                                                 GGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTC                                             >  SRR4302540.8629378/1‑94 (MQ=60)
                                                 GGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTC                                             >  SRR4302540.3553817/1‑94 (MQ=60)
                                                 GGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTC                                             >  SRR4302540.8900527/1‑94 (MQ=60)
                                                  GATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCA                                            >  SRR4302540.4565678/1‑94 (MQ=60)
                                                  GATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCA                                            >  SRR4302540.4990586/1‑94 (MQ=60)
                                                   ATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAA                                           <  SRR4302540.7576259/94‑1 (MQ=60)
                                                    TGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTGGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAAT                                          <  SRR4302540.4223513/94‑1 (MQ=60)
                                                    TGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAAT                                          <  SRR4302540.9530239/94‑1 (MQ=60)
                                                    TGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAAT                                          <  SRR4302540.48965/94‑1 (MQ=60)
                                                     GGAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATA                                         >  SRR4302540.3591243/1‑94 (MQ=60)
                                                      GAAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAA                                        >  SRR4302540.2749261/1‑94 (MQ=60)
                                                       AAATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAAT                                       <  SRR4302540.5174283/94‑1 (MQ=60)
                                                        AATAGCGGCTATTGACATTTATAACGTTACGTAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATC                                      <  SRR4302540.5236371/94‑1 (MQ=60)
                                                        AATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATT                                      >  SRR4302540.309621/1‑94 (MQ=60)
                                                        AATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATC                                      >  SRR4302540.5538676/1‑94 (MQ=60)
                                                        AATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATC                                      <  SRR4302540.6162395/94‑1 (MQ=60)
                                                         ATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCA                                     >  SRR4302540.9584234/1‑94 (MQ=60)
                                                         ATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCA                                     >  SRR4302540.1267034/1‑94 (MQ=60)
                                                         ATAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCA                                     >  SRR4302540.5057546/1‑94 (MQ=60)
                                                          TAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAA                                    >  SRR4302540.340690/1‑94 (MQ=60)
                                                          TAGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAA                                    >  SRR4302540.3848883/1‑94 (MQ=60)
                                                           AGCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAAT                                   >  SRR4302540.3204278/1‑94 (MQ=60)
                                                            gcggcttgttacatgTATAACGTTACGGAAG‑CCGTTTTTTCTGCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATG                                  <  SRR4302540.2608470/79‑1 (MQ=60)
                                                            GCGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATG                                  <  SRR4302540.8169733/94‑1 (MQ=60)
                                                             GGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGC                                 <  SRR4302540.703373/94‑1 (MQ=60)
                                                             CGGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGC                                 >  SRR4302540.2052916/1‑94 (MQ=60)
                                                              GGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCA                                >  SRR4302540.3713273/1‑94 (MQ=60)
                                                              GGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCA                                >  SRR4302540.3998197/1‑94 (MQ=60)
                                                              GGCTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCA                                >  SRR4302540.4242893/1‑94 (MQ=60)
                                                                CTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAA                              >  SRR4302540.9300348/1‑94 (MQ=60)
                                                                CTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAA                              >  SRR4302540.7671437/1‑94 (MQ=60)
                                                                CTATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAA                              >  SRR4302540.7671438/1‑94 (MQ=60)
                                                                 TATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAC                             >  SRR4302540.4253384/1‑94 (MQ=60)
                                                                 TATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAC                             >  SRR4302540.3367802/1‑94 (MQ=60)
                                                                 TATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAC                             <  SRR4302540.6731678/94‑1 (MQ=60)
                                                                 TATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAC                             >  SRR4302540.7595817/1‑94 (MQ=60)
                                                                 TATTGACATTTATAACGTTACGGAAG‑CCGTTTTCTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAAC                             >  SRR4302540.233652/1‑94 (MQ=60)
                                                                 TATTGACATTTATAACGTTACGGAAG‑CCGCTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATCATCAATGCAAAC                             >  SRR4302540.1402042/1‑94 (MQ=60)
                                                                  ATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACC                            >  SRR4302540.2162799/1‑94 (MQ=60)
                                                                  ATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACC                            >  SRR4302540.1627476/1‑94 (MQ=60)
                                                                  ATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACC                            >  SRR4302540.7563658/1‑94 (MQ=60)
                                                                  ATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACC                            >  SRR4302540.4345772/1‑94 (MQ=60)
                                                                  ATTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACC                            <  SRR4302540.4713799/94‑1 (MQ=60)
                                                                   TTGACATTTATAACGTTACTGAAG‑CCGCTTTTTCTTCTCTCGACATCTCTTTATTGTTGCCTTGGTTGACTTCCTCAATAATTAACGCAAAGCG                           >  SRR4302540.5381986/1‑94 (MQ=34)
                                                                   TTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCG                           <  SRR4302540.7451819/94‑1 (MQ=60)
                                                                   TTGACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCG                           <  SRR4302540.5092024/94‑1 (MQ=60)
                                                                     GACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTT                         >  SRR4302540.5615427/1‑94 (MQ=60)
                                                                      ACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTT                        >  SRR4302540.4710707/1‑94 (MQ=60)
                                                                      ACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTT                        >  SRR4302540.9391451/1‑94 (MQ=60)
                                                                      ACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTT                        <  SRR4302540.3513079/94‑1 (MQ=60)
                                                                      ACATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTT                        <  SRR4302540.4980202/94‑1 (MQ=60)
                                                                       CATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTT                       >  SRR4302540.3817975/1‑94 (MQ=60)
                                                                        ATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTT                      >  SRR4302540.2925978/1‑94 (MQ=60)
                                                                        ATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTT                      <  SRR4302540.6824701/94‑1 (MQ=60)
                                                                        ATTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTT                      <  SRR4302540.4094667/94‑1 (MQ=60)
                                                                         TTTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTC                     <  SRR4302540.4314722/94‑1 (MQ=60)
                                                                          TTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCA                    >  SRR4302540.4511458/1‑94 (MQ=60)
                                                                          TTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCA                    <  SRR4302540.8454493/94‑1 (MQ=60)
                                                                          TTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCA                    >  SRR4302540.3945328/1‑94 (MQ=60)
                                                                          TTATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCA                    >  SRR4302540.4593099/1‑94 (MQ=60)
                                                                           TATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCAT                   >  SRR4302540.6759643/1‑94 (MQ=60)
                                                                           TATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCAT                   <  SRR4302540.6180867/94‑1 (MQ=60)
                                                                            ATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATT                  <  SRR4302540.113753/94‑1 (MQ=60)
                                                                            ATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATT                  >  SRR4302540.1380940/1‑94 (MQ=60)
                                                                            ATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATT                  <  SRR4302540.6109648/94‑1 (MQ=60)
                                                                            ATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATT                  >  SRR4302540.8297486/1‑94 (MQ=60)
                                                                            ATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATT                  >  SRR4302540.3767326/1‑94 (MQ=60)
                                                                            ATAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATT                  <  SRR4302540.5131586/94‑1 (MQ=60)
                                                                             TAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTG                 >  SRR4302540.7630772/1‑94 (MQ=60)
                                                                             TAACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTG                 <  SRR4302540.9725349/94‑1 (MQ=60)
                                                                              AACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGA                <  SRR4302540.7766908/94‑1 (MQ=60)
                                                                              AACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGA                <  SRR4302540.10059061/94‑1 (MQ=60)
                                                                              AACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGA                <  SRR4302540.5626594/94‑1 (MQ=60)
                                                                               ACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAG               <  SRR4302540.4069001/94‑1 (MQ=60)
                                                                               ACGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAG               <  SRR4302540.1179482/94‑1 (MQ=60)
                                                                                CGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGT              <  SRR4302540.7058697/94‑1 (MQ=60)
                                                                                CGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGT              >  SRR4302540.6628203/1‑94 (MQ=60)
                                                                                CGTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGT              <  SRR4302540.10076921/94‑1 (MQ=60)
                                                                                 GTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTG             <  SRR4302540.9959568/94‑1 (MQ=60)
                                                                                 GTTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTG             >  SRR4302540.4829271/1‑94 (MQ=60)
                                                                                 GTTACGGAAG‑CCGTGTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTG             >  SRR4302540.5901861/1‑94 (MQ=60)
                                                                                  TTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGT            <  SRR4302540.5516459/94‑1 (MQ=60)
                                                                                  TTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGT            <  SRR4302540.9261372/94‑1 (MQ=60)
                                                                                  TTACGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGT            <  SRR4302540.2386584/94‑1 (MQ=60)
                                                                                     CGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTA         <  SRR4302540.4957017/94‑1 (MQ=60)
                                                                                     CGGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTA         >  SRR4302540.6331282/1‑94 (MQ=60)
                                                                                      GGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTTA        >  SRR4302540.3820611/1‑94 (MQ=60)
                                                                                      GGAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAA        >  SRR4302540.1981895/1‑94 (MQ=60)
                                                                                       GAAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCCATAATCAATGCAAACCGTTTTTCATTttttgtgtaca       >  SRR4302540.5088454/1‑83 (MQ=60)
                                                                                        AAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAA      <  SRR4302540.4388939/94‑1 (MQ=60)
                                                                                        AAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAA      <  SRR4302540.6435444/94‑1 (MQ=60)
                                                                                        AAG‑CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAA      <  SRR4302540.6435446/94‑1 (MQ=60)
                                                                                         gagCCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAA      <  SRR4302540.8429689/91‑1 (MQ=60)
                                                                                          agCCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAG     <  SRR4302540.2419219/92‑1 (MQ=60)
                                                                                          agCCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAG     >  SRR4302540.4838854/3‑94 (MQ=60)
                                                                                            CCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAGAA   >  SRR4302540.9111551/1‑94 (MQ=60)
                                                                                            CCGTTTTTTCTTCTGTCGCCATCTCTTCATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAGAA   <  SRR4302540.8602972/94‑1 (MQ=60)
                                                                                             CGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAGAAT  <  SRR4302540.22326/94‑1 (MQ=60)
                                                                                             CGTTGTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAGAAT  <  SRR4302540.437642/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTTTCATAATAAGTCCATTTTTTAAACGTAGGGAGGCCGCCACCCACCAGGATGGAAATAGCGGCTATTGACATTTATAACGTTACGGAAGCCCGTTTTTTCTTCTGTCGCCATCTCTTTATTTTTGCGTTGGTTGATTTCCTCAATAATCAATGCAAACCGTTTTTCATTGAGTGTGTAAAAGAAT  >  NC_000913/4061868‑4062054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑