Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,085,695	T→C	K581R (AAG→AGG)	frvR ←	putative frv operon regulatory protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,085,695	0	T	C	99.8%	1674.3 / ‑5.6	515	K581R (AAG→AGG)	frvR	putative frv operon regulatory protein
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (278/236); total (278/237)
Fisher's exact test for biased strand distribution p-value = 4.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01

Only 100 of 540 total aligned reads displayed.

CGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTA  >  NC_000913/4085604‑4085784

cGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCtg                                                                                         <  1:7793717/93‑1 (MQ=255)

  aaaTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCtgtg                                                                                       >  1:8734017/1‑93 (MQ=255)

   aaTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGa                                                                                      >  2:9322506/1‑93 (MQ=255)

   aaTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGa                                                                                      >  2:6879817/1‑93 (MQ=255)

    aTGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGaa                                                                                     <  1:6596186/93‑1 (MQ=255)

     tGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAg                                                                                    <  1:5612263/93‑1 (MQ=255)

     tGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAg                                                                                    >  1:7603099/1‑93 (MQ=255)

     tGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAg                                                                                    >  1:10031584/1‑93 (MQ=255)

       cttGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTa                                                                                  <  1:1754949/92‑1 (MQ=255)

        ttGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGACGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTaa                                                                                 >  2:1149547/1‑93 (MQ=255)

          gatgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACt                                                                               >  2:3308718/1‑93 (MQ=255)

           atgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTc                                                                              <  2:2986722/93‑1 (MQ=255)

           atgaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTc                                                                              >  1:107885/1‑93 (MQ=255)

             gaCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCa                                                                            >  2:6396545/1‑93 (MQ=255)

              aCTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCAt                                                                           >  1:4020148/1‑93 (MQ=255)

                tataATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATaa                                                                         >  1:8200373/1‑93 (MQ=255)

                tataATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATaa                                                                         <  1:8077699/93‑1 (MQ=255)

                 ataataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATaaa                                                                        >  2:1264466/1‑93 (MQ=255)

                 ataataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATaaa                                                                        <  2:5222372/93‑1 (MQ=255)

                 ataataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATaaa                                                                        <  1:5985540/93‑1 (MQ=255)

                 ataataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATaaa                                                                        >  1:4122352/1‑93 (MQ=255)

                 ataataGCCTGCGCTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATaaa                                                                        >  2:8683260/1‑93 (MQ=255)

                  taataGCCTGCTTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ACCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAAt                                                                       <  2:783798/93‑1 (MQ=255)

                  taataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAAt                                                                       <  2:6660457/93‑1 (MQ=255)

                    ataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACGGTTCACCCCCTGTGAAGTAACTCCATAAATGc                                                                     <  2:981697/93‑1 (MQ=255)

                    ataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGc                                                                     >  2:3749112/1‑93 (MQ=255)

                    ataGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGc                                                                     >  1:8500668/1‑93 (MQ=255)

                     taGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGcc                                                                    >  1:4652956/1‑93 (MQ=255)

                     taGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGcc                                                                    <  2:9158630/93‑1 (MQ=255)

                      aGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCt                                                                   >  2:2277635/1‑93 (MQ=255)

                       gCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTc                                                                  >  1:9983325/1‑93 (MQ=255)

                       gCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTc                                                                  >  1:4238201/1‑93 (MQ=255)

                        ccTGCGTTAAACGTTTTTGATGATAAATGCAGTGTGGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCa                                                                 <  1:2204647/93‑1 (MQ=255)

                          tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               <  1:8340996/93‑1 (MQ=255)

                          tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               >  2:1496628/1‑93 (MQ=255)

                          tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               <  2:3939042/93‑1 (MQ=255)

                          tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               >  2:5855711/1‑93 (MQ=255)

                          tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               >  2:5998311/1‑93 (MQ=255)

                          tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               >  2:7312986/1‑93 (MQ=255)

                          tGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               >  2:8297361/1‑93 (MQ=255)

                          tGCGTTAAACGTTTTTGATAATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCata                                                               <  1:7910262/93‑1 (MQ=255)

                            acttAAAAGTTTTTGATGAAAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATc                                                             <  1:6961215/91‑1 (MQ=255)

                             gTTAAACGTTTTTGATGATATTTGCATTGTCGGATGCGGCGC‑ATCCGACTTAGTTCACCCCCTTTGTAGTAACTCCATAAACGTTTCATATcc                                                            >  1:8953220/1‑93 (MQ=255)

                             gTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATcc                                                            <  2:4417001/93‑1 (MQ=255)

                             gTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATcc                                                            <  2:7725119/93‑1 (MQ=255)

                              ttAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCt                                                           >  2:5769299/1‑93 (MQ=255)

                                aaaCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGt                                                         >  2:2600487/1‑93 (MQ=255)

                                 aaCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGtt                                                        <  2:8556666/93‑1 (MQ=255)

                                  aCGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTa                                                       >  2:352310/1‑93 (MQ=255)

                                   catttttGATGATAATTGCAGTGTCGGATGAAGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCACATATCCTGTTaa                                                      <  2:8924380/91‑1 (MQ=255)

                                   cGTTTTGGATGATAAATGCGGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGGGAAGTAACTCCATAAATGCCTCATATCCTGTTaa                                                      <  1:4472679/93‑1 (MQ=255)

                                          gatgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa                                               >  2:3056646/1‑93 (MQ=255)

                                          gatgatAAATGCAGTGTCGGATGCGGCG‑GATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACTCTGCa                                               >  1:9428708/1‑93 (MQ=255)

                                          gatgatAAATGCAGTGTCGGATGCGGC‑CCATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCa                                               <  1:3692219/93‑1 (MQ=255)

                                            tgatAAATGCGGTGTCGGATGCGGCGC‑ACCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaat                                             <  1:2094954/93‑1 (MQ=255)

                                            tgatAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaat                                             >  1:6667250/1‑93 (MQ=255)

                                              atAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataa                                           >  1:3338180/1‑93 (MQ=255)

                                               tAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCaataat                                          <  1:2815458/93‑1 (MQ=255)

                                                 aaTGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAtct                                        >  2:4699481/1‑93 (MQ=255)

                                                   tGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc                                      <  2:5128077/93‑1 (MQ=255)

                                                   tGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTACATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTcc                                      >  1:2371874/1‑93 (MQ=255)

                                                    gCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCCCCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccg                                     <  1:5143518/93‑1 (MQ=255)

                                                    gCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccg                                     >  2:8414536/1‑93 (MQ=255)

                                                    gCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccg                                     >  1:2616846/1‑93 (MQ=255)

                                                    gCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccc                                     >  2:7502305/1‑92 (MQ=255)

                                                      aGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgcc                                   >  1:9284080/1‑93 (MQ=255)

                                                      aGTGTCGGAGGC‑GCCCCATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgcc                                   <  2:5441859/93‑1 (MQ=255)

                                                       gtgtCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgccg                                  >  1:4776513/1‑93 (MQ=255)

                                                       gtgtCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTccgccg                                  <  2:452784/93‑1 (MQ=255)

                                                        tgtCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCgg                                 >  2:3628000/1‑93 (MQ=255)

                                                         gtCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGa                                <  2:4381961/93‑1 (MQ=255)

                                                         gtCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGa                                <  2:626848/93‑1 (MQ=255)

                                                          tCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAt                               >  1:1372278/1‑93 (MQ=255)

                                                            ggATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGc                             <  1:3242958/93‑1 (MQ=255)

                                                            ggATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGc                             <  2:9618819/93‑1 (MQ=255)

                                                             gATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt                            >  1:7189624/1‑93 (MQ=255)

                                                             gATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCt                            <  2:4224161/93‑1 (MQ=255)

                                                              aTGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTg                           >  2:6518477/1‑93 (MQ=255)

                                                               tGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGa                          <  1:4292832/93‑1 (MQ=255)

                                                               tGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGa                          <  2:8160541/93‑1 (MQ=255)

                                                                 cggcgC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGaca                        >  2:5599956/1‑93 (MQ=255)

                                                                       cacccGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAata                   <  2:1873186/90‑1 (MQ=255)

                                                                       caTCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAata                   <  2:4906937/92‑1 (MQ=255)

                                                                       caTCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAata                   <  1:9646182/92‑1 (MQ=255)

                                                                        aTCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAatat                  >  1:4921218/1‑93 (MQ=255)

                                                                         tCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATg                 <  2:6729612/93‑1 (MQ=255)

                                                                         tCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATg                 <  1:3084294/93‑1 (MQ=255)

                                                                         tCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATg                 <  1:2957460/93‑1 (MQ=255)

                                                                           cGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCt               <  1:6354347/93‑1 (MQ=255)

                                                                           cGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCt               <  1:1639642/93‑1 (MQ=255)

                                                                            gACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCtt              >  2:4036335/1‑93 (MQ=255)

                                                                            gACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCtt              >  2:8759674/1‑93 (MQ=255)

                                                                            gACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCtt              >  1:5539392/1‑93 (MQ=255)

                                                                               acaGTTCCCCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGcc           <  2:2721755/93‑1 (MQ=255)

                                                                               acaGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGcc           <  2:7141505/93‑1 (MQ=255)

                                                                               acaGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGcc           >  1:9822723/1‑93 (MQ=255)

                                                                               acaGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGcc           >  1:6249418/1‑93 (MQ=255)

                                                                                   ttCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGAt       <  1:6801592/93‑1 (MQ=255)

                                                                                      cccccCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGc    <  2:2120105/92‑1 (MQ=255)

                                                                                      cccccCTGCGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGc    <  1:3531055/92‑1 (MQ=255)

CGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTA  >  NC_000913/4085604‑4085784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 282 total aligned reads displayed.

CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAATA  >  NC_000913/4085601‑4085788

 AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCT                                                                                              >  SRR4302540.1779961/1‑94 (MQ=60)

 AACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCT                                                                                              <  SRR4302540.3515307/94‑1 (MQ=60)

  ACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTG                                                                                             >  SRR4302540.3016537/1‑94 (MQ=60)

  ACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTG                                                                                             <  SRR4302540.4949409/94‑1 (MQ=60)

   CGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGT                                                                                            <  SRR4302540.9532002/94‑1 (MQ=60)

   CGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGT                                                                                            <  SRR4302540.9532001/94‑1 (MQ=60)

    GAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTG                                                                                           >  SRR4302540.1630205/1‑94 (MQ=60)

    GAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTG                                                                                           >  SRR4302540.4744815/1‑94 (MQ=60)

    GAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTG                                                                                           >  SRR4302540.8835436/1‑94 (MQ=60)

     AAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGA                                                                                          >  SRR4302540.8419511/1‑94 (MQ=60)

       ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAG                                                                                        <  SRR4302540.8334793/94‑1 (MQ=60)

       ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAG                                                                                        >  SRR4302540.10148274/1‑94 (MQ=60)

       ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAG                                                                                        >  SRR4302540.7688528/1‑94 (MQ=60)

       ATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGATCACCCCCTGTGAAG                                                                                        >  SRR4302540.1744431/1‑94 (MQ=60)

        TGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGT                                                                                       <  SRR4302540.5673998/94‑1 (MQ=60)

        GGGTTGAGGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGT                                                                                       <  SRR4302540.1992129/94‑1 (MQ=60)

         GGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTA                                                                                      >  SRR4302540.3948908/1‑94 (MQ=60)

           TTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAAC                                                                                    <  SRR4302540.6750541/94‑1 (MQ=60)

           TTGATGAATATAATAGCCTGCGTTAACCGTTTTTGATGATAAAGGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAAC                                                                                    <  SRR4302540.10072668/94‑1 (MQ=60)

            TGATGACTATAATAGCCTGCGTTAAAGGTTTTTGATGATAAATGCAGTGTCGGATGCGGC‑CCATCCGACACAGTTCACCCCCTGTGAAGTAACT                                                                                   <  SRR4302540.7536870/94‑1 (MQ=60)

            TGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTTAAGTAACT                                                                                   >  SRR4302540.5652606/1‑94 (MQ=60)

            TGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACT                                                                                   <  SRR4302540.3112117/94‑1 (MQ=60)

            TGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACT                                                                                   >  SRR4302540.4943422/1‑94 (MQ=60)

             GATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTC                                                                                  >  SRR4302540.109041/1‑94 (MQ=60)

             GATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTC                                                                                  <  SRR4302540.8240979/94‑1 (MQ=60)

              ATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCC                                                                                 >  SRR4302540.6301088/1‑94 (MQ=60)

               TGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCA                                                                                <  SRR4302540.8993379/94‑1 (MQ=60)

                GACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCAT                                                                               >  SRR4302540.4063461/1‑94 (MQ=60)

                GACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCAT                                                                               >  SRR4302540.3654622/1‑94 (MQ=60)

                GACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCAT                                                                               >  SRR4302540.4401786/1‑94 (MQ=60)

                GACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACACCCTGTGAAGTAACTCCAT                                                                               >  SRR4302540.2387900/1‑94 (MQ=60)

                 ACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTCACTCCATA                                                                              >  SRR4302540.3297432/1‑94 (MQ=60)

                 ACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATA                                                                              >  SRR4302540.46300/1‑94 (MQ=60)

                 ACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATA                                                                              <  SRR4302540.1550008/94‑1 (MQ=60)

                 ACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATA                                                                              <  SRR4302540.2655328/94‑1 (MQ=60)

                  CTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACTCCCTGTGAAGGAACTCCATAA                                                                             >  SRR4302540.8522000/1‑94 (MQ=60)

                  CTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAA                                                                             >  SRR4302540.8295668/1‑94 (MQ=60)

                  CTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAA                                                                             >  SRR4302540.6954161/1‑94 (MQ=60)

                  CTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAA                                                                             >  SRR4302540.3753646/1‑94 (MQ=60)

                  CTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAA                                                                             <  SRR4302540.1117808/94‑1 (MQ=60)

                  CTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAA                                                                             <  SRR4302540.6978403/94‑1 (MQ=60)

                   TATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGCACCAGTTCACCCCCTGTGAAGTAACTCAATAAA                                                                            >  SRR4302540.7698353/1‑94 (MQ=60)

                   TATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACGGTTCACCCCCTGTGAAGTAACTCCATAAA                                                                            >  SRR4302540.8977698/1‑94 (MQ=60)

                   TATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAA                                                                            >  SRR4302540.4173394/1‑94 (MQ=60)

                   TATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAA                                                                            <  SRR4302540.8171446/94‑1 (MQ=60)

                    ATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAAT                                                                           <  SRR4302540.2397405/94‑1 (MQ=60)

                    ATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAAT                                                                           >  SRR4302540.3472269/1‑94 (MQ=60)

                    ATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAAT                                                                           <  SRR4302540.3621834/94‑1 (MQ=60)

                    ATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAAT                                                                           <  SRR4302540.6051830/94‑1 (MQ=60)

                     TAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATG                                                                          >  SRR4302540.394270/1‑94 (MQ=60)

                      AATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGC                                                                         >  SRR4302540.8599443/1‑94 (MQ=60)

                      AATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGC                                                                         >  SRR4302540.8140070/1‑94 (MQ=60)

                       ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCC                                                                        <  SRR4302540.9668509/94‑1 (MQ=60)

                       ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCC                                                                        >  SRR4302540.7711886/1‑94 (MQ=60)

                       ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCC                                                                        <  SRR4302540.4339526/94‑1 (MQ=60)

                       ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCC                                                                        >  SRR4302540.7348238/1‑94 (MQ=60)

                       ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCC                                                                        >  SRR4302540.4702745/1‑94 (MQ=60)

                       ATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGGAACTCCATACATGAC                                                                        >  SRR4302540.1194013/1‑94 (MQ=60)

                        TGGCCTGCGTTAACCTTTTTTGATGATAAATGCAGTGTCGTATGCGGCGC‑ATCCGCCACAGTTCACCCCCTGTGAAGTAACGCCATAAATGCCT                                                                       <  SRR4302540.2152553/94‑1 (MQ=60)

                        TAGCGTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCT                                                                       <  SRR4302540.6553216/94‑1 (MQ=60)

                        TAGCCTGCGTCAAACGTTTTTGATGATAAATGCTGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCT                                                                       <  SRR4302540.4090184/94‑1 (MQ=60)

                         AGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTC                                                                      >  SRR4302540.4284318/1‑94 (MQ=60)

                         AGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTC                                                                      >  SRR4302540.5381101/1‑94 (MQ=60)

                          GCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCA                                                                     >  SRR4302540.876020/1‑94 (MQ=60)

                          GCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCA                                                                     >  SRR4302540.4799184/1‑94 (MQ=60)

                           tctgctgacccgctcttccgatctagcgctttTGTCGGATGCTGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    <  SRR4302540.6460642/62‑1 (MQ=60)

                           CCTGCTTTAAACGTTTTTGATGATAAATGCATTGTCGGATGCGGC‑CCATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    <  SRR4302540.2067035/94‑1 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTGGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    <  SRR4302540.2228465/94‑1 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    <  SRR4302540.4605289/94‑1 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    >  SRR4302540.460157/1‑94 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    >  SRR4302540.7719053/1‑94 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    >  SRR4302540.1803627/1‑94 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCAT                                                                    <  SRR4302540.2918069/94‑1 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACGACATAAATGCCTCAT                                                                    >  SRR4302540.6949950/1‑94 (MQ=60)

                           CCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGAAACAGGTCACCCCCTGTGAAGTCACTACATAAATGCCTCCT                                                                    >  SRR4302540.3246447/1‑94 (MQ=60)

                            CTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATA                                                                   >  SRR4302540.2150947/1‑94 (MQ=60)

                            CTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATA                                                                   >  SRR4302540.2798235/1‑94 (MQ=60)

                            CTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATA                                                                   >  SRR4302540.434865/1‑94 (MQ=60)

                             TGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATAT                                                                  >  SRR4302540.5583441/1‑94 (MQ=60)

                             TGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATAT                                                                  <  SRR4302540.8437811/94‑1 (MQ=60)

                             TGCGTTAAACGTTTTTGATAATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATAT                                                                  <  SRR4302540.8002497/94‑1 (MQ=60)

                              GCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATC                                                                 <  SRR4302540.1881561/94‑1 (MQ=60)

                              GCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATC                                                                 >  SRR4302540.9365133/1‑94 (MQ=60)

                              GCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATC                                                                 <  SRR4302540.854414/94‑1 (MQ=60)

                               ggttaaactgTTTTGATGATAGATGCAGGGTCGGATGCGGC‑CCATCCGACACAGTTCGCCCCCTGTGAAGTAACTCCATAAATGCCTCATATCC                                                                <  SRR4302540.1086476/84‑1 (MQ=60)

                               CGTTAAACGTTTTTGATGATATTTGCATTGTCGGATGCGGCGC‑ATCCGACTTAGTTCACCCCCTTTGTAGTAACTCCATAAACGTTTCATATCC                                                                >  SRR4302540.9058846/1‑94 (MQ=24)

                               CGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCC                                                                <  SRR4302540.1086475/94‑1 (MQ=60)

                               CGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCC                                                                >  SRR4302540.3278481/1‑94 (MQ=60)

                                GTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGACTCATATCCT                                                               >  SRR4302540.5525602/1‑94 (MQ=60)

                                 TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTG                                                              <  SRR4302540.7098890/94‑1 (MQ=60)

                                 TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTG                                                              >  SRR4302540.5098574/1‑94 (MQ=60)

                                 TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTG                                                              >  SRR4302540.10017752/1‑94 (MQ=60)

                                 TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTG                                                              >  SRR4302540.8350061/1‑94 (MQ=60)

                                 TTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTG                                                              >  SRR4302540.6805734/1‑94 (MQ=60)

                                  TAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGT                                                             >  SRR4302540.4775963/1‑94 (MQ=60)

                                  TAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGT                                                             >  SRR4302540.9952505/1‑94 (MQ=60)

                                   AAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTT                                                            <  SRR4302540.4365818/94‑1 (MQ=60)

                                      CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC                                                         <  SRR4302540.2128487/94‑1 (MQ=60)

                                      CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC                                                         >  SRR4302540.5619135/1‑94 (MQ=60)

                                      CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC                                                         >  SRR4302540.5044339/1‑94 (MQ=60)

                                      CGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC                                                         <  SRR4302540.7673533/94‑1 (MQ=60)

                                      CGTTTTGGATGATAAATGCGGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGGGAAGTAACTCCATAAATGCCTCATATCCTGTTAAC                                                         <  SRR4302540.4521189/94‑1 (MQ=60)

                                       GTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACC                                                        >  SRR4302540.8749390/1‑94 (MQ=60)

                                       GTTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACC                                                        <  SRR4302540.9408684/94‑1 (MQ=60)

                                        TTTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCC                                                       >  SRR4302540.7115082/1‑94 (MQ=60)

                                         TTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCG                                                      >  SRR4302540.9957545/1‑94 (MQ=60)

                                         TTTTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCG                                                      <  SRR4302540.3657144/94‑1 (MQ=60)

                                           TTGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGC                                                    >  SRR4302540.8847899/1‑94 (MQ=60)

                                            TGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA                                                   <  SRR4302540.1720410/94‑1 (MQ=60)

                                            TGATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCA                                                   <  SRR4302540.4947911/94‑1 (MQ=60)

                                            TGATGATAAATGCAGTGTCGGATGCGGCG‑GATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACTCTGCA                                                   >  SRR4302540.9540725/1‑94 (MQ=60)

                                              agggTAAATGCAGTGTCGGCGGCGGC‑CGCTCCGAAACAGTTCAGCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT                                                 <  SRR4302540.6220911/90‑1 (MQ=60)

                                              ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT                                                 >  SRR4302540.6740937/1‑94 (MQ=60)

                                              ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT                                                 <  SRR4302540.422681/94‑1 (MQ=60)

                                              ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT                                                 >  SRR4302540.3563224/1‑94 (MQ=60)

                                              ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT                                                 >  SRR4302540.7955264/1‑94 (MQ=60)

                                              ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT                                                 >  SRR4302540.8004508/1‑94 (MQ=60)

                                              ATGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAAT                                                 <  SRR4302540.6220912/94‑1 (MQ=60)

                                               TGATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATA                                                >  SRR4302540.1954529/1‑94 (MQ=60)

                                                GATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAA                                               >  SRR4302540.2921385/1‑94 (MQ=60)

                                                GATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAA                                               >  SRR4302540.3374832/1‑94 (MQ=60)

                                                GATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACACCATAAACGCCTCATATCCTGTTAACCCGGCAATAA                                               <  SRR4302540.7006895/94‑1 (MQ=60)

                                                 ATAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAAT                                              <  SRR4302540.3611308/94‑1 (MQ=60)

                                                  TAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATC                                             <  SRR4302540.2845871/94‑1 (MQ=60)

                                                  TAAATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATC                                             >  SRR4302540.3273305/1‑94 (MQ=60)

                                                    AATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTC                                           <  SRR4302540.5961977/94‑1 (MQ=60)

                                                     aaggaggtggcggaggccgcgcacCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTC                                           <  SRR4302540.1884483/70‑1 (MQ=60)

                                                     ATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC                                          <  SRR4302540.2494048/94‑1 (MQ=60)

                                                     ATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC                                          <  SRR4302540.499437/94‑1 (MQ=60)

                                                     ATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC                                          >  SRR4302540.1150603/1‑94 (MQ=60)

                                                     ATGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTACATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCC                                          >  SRR4302540.2397433/1‑94 (MQ=60)

                                                      TGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCG                                         >  SRR4302540.2645126/1‑94 (MQ=60)

                                                      TGCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCG                                         >  SRR4302540.6694522/1‑94 (MQ=60)

                                                       GCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCCCCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGC                                        <  SRR4302540.5199221/94‑1 (MQ=60)

                                                       GCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGC                                        >  SRR4302540.4284218/1‑94 (MQ=60)

                                                       GCAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGC                                        >  SRR4302540.4103527/1‑94 (MQ=60)

                                                        CAGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCC                                       <  SRR4302540.6695687/94‑1 (MQ=60)

                                                         AGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCG                                      >  SRR4302540.4827547/1‑94 (MQ=60)

                                                         AGTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCG                                      <  SRR4302540.4099652/94‑1 (MQ=60)

                                                          GTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGG                                     >  SRR4302540.9422996/1‑94 (MQ=60)

                                                          GTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGG                                     >  SRR4302540.6376786/1‑94 (MQ=60)

                                                          GTGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGG                                     >  SRR4302540.9575024/1‑94 (MQ=60)

                                                           TGTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGA                                    <  SRR4302540.6623902/94‑1 (MQ=60)

                                                            GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT                                   <  SRR4302540.9268258/94‑1 (MQ=60)

                                                            GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT                                   >  SRR4302540.1386822/1‑94 (MQ=60)

                                                            GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT                                   <  SRR4302540.7900565/94‑1 (MQ=60)

                                                            GTCGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAACCCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGAT                                   <  SRR4302540.6756181/94‑1 (MQ=60)

                                                              CGGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGC                                 >  SRR4302540.4330928/1‑94 (MQ=60)

                                                               GGATGGGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                <  SRR4302540.6396340/94‑1 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGCCACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                <  SRR4302540.2952987/94‑1 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTACCCAGGCAATAACCTCCACCGGTTGCT                                >  SRR4302540.2900031/1‑94 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                >  SRR4302540.7269762/1‑94 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                >  SRR4302540.9926507/1‑94 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                >  SRR4302540.3085942/1‑94 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                >  SRR4302540.4274638/1‑94 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                >  SRR4302540.5842358/1‑94 (MQ=60)

                                                               GGATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCT                                <  SRR4302540.3337316/94‑1 (MQ=60)

                                                                GATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTG                               >  SRR4302540.3221177/1‑94 (MQ=60)

                                                                 ATGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGA                              >  SRR4302540.8156665/1‑94 (MQ=60)

                                                                  TGCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGAC                             <  SRR4302540.4496230/94‑1 (MQ=60)

                                                                   GCGGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACA                            <  SRR4302540.8266765/94‑1 (MQ=60)

                                                                     GGCGC‑ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACA                          <  SRR4302540.9323902/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      >  SRR4302540.223751/1‑94 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      <  SRR4302540.8493592/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      <  SRR4302540.5779857/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      <  SRR4302540.9759784/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      <  SRR4302540.9131323/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      <  SRR4302540.9847233/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      <  SRR4302540.9847232/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAT                      <  SRR4302540.7928389/94‑1 (MQ=60)

                                                                          CATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCAGATGCTGACACAATAT                      >  SRR4302540.4974238/1‑94 (MQ=60)

                                                                           ATCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATG                     >  SRR4302540.7189938/1‑94 (MQ=60)

                                                                            TCCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGC                    <  SRR4302540.3118138/94‑1 (MQ=60)

                                                                             CCGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAAACCGGCAATAATCTCCGCCGGATGCTGACACAATATGCT                   >  SRR4302540.2601589/1‑94 (MQ=60)

                                                                              CGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTT                  <  SRR4302540.1657563/94‑1 (MQ=60)

                                                                              CGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTT                  <  SRR4302540.6425112/94‑1 (MQ=60)

                                                                              CGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTT                  <  SRR4302540.1657569/94‑1 (MQ=60)

                                                                              CGACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTT                  >  SRR4302540.5295991/1‑94 (MQ=60)

                                                                               GACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATAggctgc                 >  SRR4302540.8181335/1‑88 (MQ=60)

                                                                               GACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTG                 <  SRR4302540.1441392/94‑1 (MQ=60)

                                                                               GACACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTG                 <  SRR4302540.3288242/94‑1 (MQ=60)

                                                                                 CACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCC               >  SRR4302540.9937642/1‑94 (MQ=60)

                                                                                 CACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCC               >  SRR4302540.6318959/1‑94 (MQ=60)

                                                                                  ACAGTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCA              >  SRR4302540.4289445/1‑94 (MQ=60)

                                                                                     GTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGAT           >  SRR4302540.6718526/1‑94 (MQ=60)

                                                                                     GTTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGAT           <  SRR4302540.6653988/94‑1 (MQ=60)

                                                                                      TTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATA          <  SRR4302540.2728266/94‑1 (MQ=60)

                                                                                      TTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATA          <  SRR4302540.6876848/94‑1 (MQ=60)

                                                                                      TTCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATA          <  SRR4302540.7484829/94‑1 (MQ=60)

                                                                                       TCACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAG         <  SRR4302540.5609995/94‑1 (MQ=60)

                                                                                        CACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGC        >  SRR4302540.2582701/1‑94 (MQ=60)

                                                                                         ACCCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCT       <  SRR4302540.1019830/94‑1 (MQ=60)

                                                                                           CCCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAA     >  SRR4302540.5935665/1‑94 (MQ=60)

                                                                                            CCCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAA    >  SRR4302540.10000942/1‑94 (MQ=60)

                                                                                             CCTGTGGAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAAT   >  SRR4302540.8377956/1‑94 (MQ=60)

                                                                                             CCTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAAT   >  SRR4302540.5709511/1‑94 (MQ=60)

                                                                                              CTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAATA  <  SRR4302540.114118/94‑1 (MQ=60)

                                                                                              CTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAATA  >  SRR4302540.4054167/1‑94 (MQ=60)

                                                                                              CTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAATA  >  SRR4302540.418480/1‑94 (MQ=60)

                                                                                              CTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAATA  >  SRR4302540.6386362/1‑94 (MQ=60)

CAACGAAATGGTTGATGACTATAATAGCCTGCGTTAAACGTTTTTGATGATAAATGCAGTGTCGGATGCGGCGCGATCCGACACAGTTCACCCCTTGTGAAGTAACTCCATAAATGCCTCATATCCTGTTAACCCGGCAATAATCTCCGCCGGATGCTGACACAATATGCTTGCCAGATAGCTAAATA  >  NC_000913/4085601‑4085788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`