Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AA‑ATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCAT > NC_000913/4474756‑4474914
|
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTT < SRR4302540.3508024/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTT < SRR4302540.6864393/94‑1 (MQ=60)
ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgt < SRR4302540.2100435/94‑3 (MQ=60)
ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgt > SRR4302540.10043965/1‑92 (MQ=60)
TCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgta > SRR4302540.9521856/1‑91 (MQ=60)
TCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgta > SRR4302540.4528083/1‑91 (MQ=60)
CCACCGGAAAATTTACGTATAGCAGTAGAACACTTTGGGTGGAAGCATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtat < SRR4302540.9085349/94‑5 (MQ=60)
CCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtat > SRR4302540.8122066/1‑90 (MQ=60)
CCACCGGAAAATTTACGGATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtat < SRR4302540.9844994/94‑5 (MQ=60)
CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatt < SRR4302540.7597663/94‑6 (MQ=60)
CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatt > SRR4302540.5749619/1‑89 (MQ=60)
ACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtattt > SRR4302540.8308136/1‑88 (MQ=60)
ACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtattt < SRR4302540.5668764/94‑7 (MQ=60)
ACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtattt < SRR4302540.2546609/94‑7 (MQ=60)
CCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttc > SRR4302540.6503571/1‑87 (MQ=60)
CGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcc > SRR4302540.6059968/1‑86 (MQ=60)
CGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcc > SRR4302540.9984181/1‑86 (MQ=60)
GGAACATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttccc < SRR4302540.9166193/94‑10 (MQ=60)
GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttccc > SRR4302540.202064/1‑85 (MQ=60)
GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttccc > SRR4302540.1417605/1‑85 (MQ=60)
GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccg < SRR4302540.6984404/94‑11 (MQ=60)
GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccg < SRR4302540.318128/94‑11 (MQ=60)
GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccg < SRR4302540.1154514/94‑11 (MQ=60)
GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccg < SRR4302540.9350031/94‑11 (MQ=60)
AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccgg > SRR4302540.5781763/1‑83 (MQ=60)
AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccgg > SRR4302540.8145187/1‑83 (MQ=60)
AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggc > SRR4302540.8728985/1‑82 (MQ=60)
ATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcat > SRR4302540.9569767/1‑80 (MQ=60)
ATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcat > SRR4302540.9957937/1‑80 (MQ=60)
ATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcat > SRR4302540.3880960/1‑80 (MQ=60)
TTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatct < SRR4302540.4047733/94‑17 (MQ=60)
TTACGTATAGCAATAGAACACTGTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatct < SRR4302540.4047732/94‑17 (MQ=60)
TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt < SRR4302540.6556160/94‑18 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt > SRR4302540.2180264/1‑76 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt < SRR4302540.3560697/94‑19 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt > SRR4302540.7767180/1‑76 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > SRR4302540.6584972/1‑74 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > SRR4302540.9449461/1‑74 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat < SRR4302540.9514145/94‑21 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat < SRR4302540.3974381/94‑21 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > SRR4302540.1969818/1‑74 (MQ=60)
TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata < SRR4302540.2675440/94‑22 (MQ=60)
TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata < SRR4302540.8547202/94‑22 (MQ=60)
TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata > SRR4302540.233172/1‑73 (MQ=60)
TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata > SRR4302540.507844/1‑73 (MQ=60)
ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttccctgcatctttatag > SRR4302540.3679633/1‑72 (MQ=60)
ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag < SRR4302540.4173819/94‑23 (MQ=60)
ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag > SRR4302540.1270986/1‑72 (MQ=60)
ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag > SRR4302540.3554942/1‑72 (MQ=60)
ATAGCAATAGAACACTTTGGGAGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag > SRR4302540.4995158/1‑72 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc < SRR4302540.78278/94‑24 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc > SRR4302540.6299054/1‑71 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc < SRR4302540.78014/94‑24 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc < SRR4302540.9282515/94‑24 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc > SRR4302540.7106368/1‑71 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc < SRR4302540.9079138/94‑24 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc > SRR4302540.788894/1‑71 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc < SRR4302540.8938762/94‑24 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGACGCCGGGATGGTTTgtatttcccggcatctttatagc < SRR4302540.4154683/94‑24 (MQ=60)
AGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcg > SRR4302540.6495894/1‑70 (MQ=60)
GCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTttatttcccggactctttatagcga > SRR4302540.7868101/1‑69 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat < SRR4302540.5953728/94‑27 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatctcccggcatctttatagcgat < SRR4302540.6588500/94‑27 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAACGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat < SRR4302540.98294/94‑27 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgctag > SRR4302540.8164172/1‑66 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > SRR4302540.9104379/1‑66 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag < SRR4302540.6428343/94‑29 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag < SRR4302540.10074025/94‑29 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > SRR4302540.6124380/1‑66 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > SRR4302540.9612634/1‑66 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > SRR4302540.9612635/1‑66 (MQ=60)
TAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagc > SRR4302540.89011/1‑65 (MQ=60)
TAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagc > SRR4302540.4790165/1‑65 (MQ=60)
TAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagc < SRR4302540.5269346/94‑30 (MQ=60)
TAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagc > SRR4302540.3971477/1‑65 (MQ=60)
AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > SRR4302540.10035271/1‑62 (MQ=60)
AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > SRR4302540.2717259/1‑62 (MQ=60)
AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat < SRR4302540.3290821/94‑33 (MQ=60)
AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > SRR4302540.2757461/1‑62 (MQ=60)
AACACTTGTGGTGCAAGAATAGACCTATCACTGCAT‑AAGATAATGTGGTGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat < SRR4302540.3290820/94‑33 (MQ=35)
ACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatt > SRR4302540.7240219/1‑61 (MQ=60)
ACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatt > SRR4302540.4710683/1‑61 (MQ=60)
CACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta < SRR4302540.5259657/94‑35 (MQ=60)
CACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta < SRR4302540.1055226/94‑35 (MQ=60)
ACTTTGGGTGGAAGAATAGTCCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat < SRR4302540.1127931/94‑36 (MQ=60)
CTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt > SRR4302540.9053846/1‑58 (MQ=60)
TTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt < SRR4302540.4532638/94‑38 (MQ=60)
TTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt < SRR4302540.4752723/94‑38 (MQ=60)
TTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt < SRR4302540.9463181/94‑38 (MQ=60)
TTGGGTGGAAGAATAGACCTAACACTGCATAAA‑ATAATATGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattta > SRR4302540.6250929/1‑56 (MQ=49)
TGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttac < SRR4302540.6691615/94‑40 (MQ=60)
GGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact > SRR4302540.5204766/1‑54 (MQ=60)
GGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact < SRR4302540.1857857/94‑41 (MQ=60)
GGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact < SRR4302540.9358466/94‑41 (MQ=60)
GGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactg < SRR4302540.2827771/94‑42 (MQ=60)
GGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactg < SRR4302540.5038568/94‑42 (MQ=60)
GCTGGAATAATAGACCTATCACGGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactg < SRR4302540.9157994/94‑42 (MQ=35)
GTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga > SRR4302540.6911907/1‑52 (MQ=60)
GTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga < SRR4302540.3429594/94‑43 (MQ=60)
GTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga < SRR4302540.4202080/94‑43 (MQ=60)
TGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag > SRR4302540.2140264/1‑51 (MQ=60)
GGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagt < SRR4302540.6733097/94‑45 (MQ=60)
GAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGCTGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtg > SRR4302540.1695329/1‑49 (MQ=60)
GAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtg < SRR4302540.8409267/94‑46 (MQ=60)
GAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtg < SRR4302540.8409268/94‑46 (MQ=60)
AAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt < SRR4302540.9762510/94‑47 (MQ=60)
AAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt < SRR4302540.3610052/94‑47 (MQ=60)
AGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc < SRR4302540.2812282/94‑48 (MQ=60)
AGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc > SRR4302540.9564309/1‑47 (MQ=60)
AGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc < SRR4302540.5968095/94‑48 (MQ=60)
GAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcg < SRR4302540.3257014/94‑49 (MQ=60)
GAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcg < SRR4302540.9531578/94‑49 (MQ=60)
GAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcg > SRR4302540.9041878/1‑46 (MQ=60)
GAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcg > SRR4302540.8529088/1‑46 (MQ=60)
AATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgc > SRR4302540.10133077/1‑45 (MQ=60)
AATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgc > SRR4302540.2186893/1‑45 (MQ=60)
ATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcg > SRR4302540.7513697/1‑44 (MQ=60)
AGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgac < SRR4302540.6307238/94‑53 (MQ=60)
AGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgac < SRR4302540.3370362/94‑53 (MQ=60)
AGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgac > SRR4302540.3316593/1‑42 (MQ=60)
GACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACC < SRR4302540.5321681/94‑1 (MQ=21)
GACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACC > SRR4302540.4991003/1‑94 (MQ=21)
ACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCA < SRR4302540.3740554/94‑1 (MQ=19)
ACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCA < SRR4302540.4338892/94‑1 (MQ=19)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCAT > SRR4302540.2168524/1‑94 (MQ=18)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCAT > SRR4302540.9161752/1‑94 (MQ=18)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCAT > SRR4302540.506075/1‑94 (MQ=18)
CCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCAT > SRR4302540.2953111/1‑94 (MQ=18)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagccatagcaattatttactgagtgtcgcgcccatc > SRR4302540.1476521/1‑38 (MQ=56)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.8324768/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.3718382/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.8493199/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC < SRR4302540.8161739/94‑1 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.8591999/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.798401/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC < SRR4302540.592258/94‑1 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.148963/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.1476522/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC < SRR4302540.9714736/94‑1 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC > SRR4302540.2028219/1‑94 (MQ=16)
CTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC > SRR4302540.2048714/1‑94 (MQ=23)
CTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT > SRR4302540.1926329/1‑94 (MQ=16)
CTGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT > SRR4302540.4032074/1‑94 (MQ=16)
TGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTT < SRR4302540.5324403/94‑1 (MQ=18)
TGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTT > SRR4302540.8028560/1‑94 (MQ=18)
TGCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTT > SRR4302540.4263756/1‑94 (MQ=18)
GCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTT < SRR4302540.8457007/94‑1 (MQ=19)
GCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTT < SRR4302540.5082988/94‑1 (MQ=19)
GCATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTT < SRR4302540.5305191/94‑1 (MQ=19)
CATAAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTG < SRR4302540.4478167/94‑1 (MQ=21)
taAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGAT > SRR4302540.4784050/3‑94 (MQ=25)
taAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGAT < SRR4302540.4414101/92‑1 (MQ=25)
taAA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGAT > SRR4302540.7621205/3‑94 (MQ=25)
A‑AA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATA < SRR4302540.2520939/94‑1 (MQ=26)
AA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG < SRR4302540.9942271/94‑1 (MQ=28)
AA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG < SRR4302540.8148785/94‑1 (MQ=28)
AA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG < SRR4302540.1329157/94‑1 (MQ=28)
AA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG < SRR4302540.5278586/94‑1 (MQ=28)
AA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG < SRR4302540.5675654/94‑1 (MQ=28)
AA‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG < SRR4302540.1329158/94‑1 (MQ=28)
A‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT > SRR4302540.3055062/1‑94 (MQ=28)
A‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT < SRR4302540.4807048/94‑1 (MQ=28)
A‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT > SRR4302540.7317161/1‑94 (MQ=28)
A‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT < SRR4302540.7159051/94‑1 (MQ=28)
A‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT < SRR4302540.8123676/94‑1 (MQ=28)
A‑ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT < SRR4302540.3314596/94‑1 (MQ=28)
ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTA < SRR4302540.8363711/94‑1 (MQ=28)
ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTA < SRR4302540.2228840/94‑1 (MQ=28)
TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302540.2223320/94‑1 (MQ=28)
TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302540.9798773/94‑1 (MQ=28)
TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302540.9457166/94‑1 (MQ=28)
TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302540.3990867/94‑1 (MQ=28)
TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302540.2521728/94‑1 (MQ=28)
TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT < SRR4302540.1675118/94‑1 (MQ=28)
AATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATG < SRR4302540.8757622/94‑1 (MQ=30)
AATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATG < SRR4302540.7427419/94‑1 (MQ=30)
ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC > SRR4302540.2642234/1‑94 (MQ=32)
TGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCA > SRR4302540.809638/1‑94 (MQ=34)
TGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCA > SRR4302540.9458874/1‑94 (MQ=34)
GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302540.7624093/94‑1 (MQ=36)
GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302540.8851011/94‑1 (MQ=36)
GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302540.5769552/94‑1 (MQ=36)
GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302540.9668553/94‑1 (MQ=36)
GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302540.3221372/94‑1 (MQ=36)
GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT < SRR4302540.7451351/94‑1 (MQ=36)
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AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AA‑ATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCAT > NC_000913/4474756‑4474914
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
