Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 245 579.6 28867798 97.7% 28203838 96.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAAGTGATGGCGGGCGGCGTTTCAAAGGCCATGCGCTGGAAGGC‑‑TGGCG‑‑‑‑AA‑‑‑‑CTGGCTACAGCTGAAGGATTGATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGG  >  NC_000913/4008350‑4008468
                                                    |                                                                                      
NNNGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAT                               <  SRR4302518.11741891/101‑1 (MQ=18)
GAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAT                               <  SRR4302518.1114364/101‑1 (MQ=23)
 NNNTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATG                              <  SRR4302518.13664866/101‑1 (MQ=17)
 NNNTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATG                              <  SRR4302518.12262059/101‑1 (MQ=17)
   GTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAA                            <  SRR4302518.4579327/101‑1 (MQ=18)
    TGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAAC                           <  SRR4302518.1641741/101‑1 (MQ=18)
    TGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAAC                           <  SRR4302518.5430644/101‑1 (MQ=18)
    TGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAAC                           <  SRR4302518.3295537/101‑1 (MQ=18)
    GGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAAC                           <  SRR4302518.4720110/101‑1 (MQ=17)
     GATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACG                          <  SRR4302518.2106652/101‑1 (MQ=18)
     GATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACG                          <  SRR4302518.4547432/101‑1 (MQ=18)
      ATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGA                         <  SRR4302518.7333498/101‑1 (MQ=18)
        GGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACG                       <  SRR4302518.1880780/101‑1 (MQ=18)
         GCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGC                      <  SRR4302518.971059/101‑1 (MQ=18)
          CGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCC                     <  SRR4302518.3386956/101‑1 (MQ=18)
          CGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCC                     <  SRR4302518.7255353/101‑1 (MQ=18)
           GGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCG                    >  SRR4302518.6598371/1‑101 (MQ=18)
            GGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGA                   >  SRR4302518.4514232/1‑101 (MQ=18)
             GCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAA                  <  SRR4302518.738790/101‑1 (MQ=18)
               GGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAT                >  SRR4302518.2801977/1‑101 (MQ=18)
               GGCGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAT                <  SRR4302518.1944757/101‑1 (MQ=18)
                 CGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGC              >  SRR4302518.4950324/1‑101 (MQ=20)
                 CGTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGC              >  SRR4302518.4500920/1‑101 (MQ=20)
                  nnntcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT             <  SRR4302518.13996534/95‑1 (MQ=23)
                  nnntcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT             <  SRR4302518.7710979/95‑1 (MQ=23)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATNNN             >  SRR4302518.9944202/1‑101 (MQ=17)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATNNN             >  SRR4302518.10207111/1‑101 (MQ=17)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATNNN             >  SRR4302518.7959043/1‑101 (MQ=17)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATNNN             >  SRR4302518.14587260/1‑101 (MQ=17)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATNNN             >  SRR4302518.11622897/1‑101 (MQ=17)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT             >  SRR4302518.5282400/1‑101 (MQ=22)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT             >  SRR4302518.3639771/1‑101 (MQ=22)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT             <  SRR4302518.4019725/101‑1 (MQ=22)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCG             >  SRR4302518.1358678/1‑101 (MQ=20)
                  GTTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCA             <  SRR4302518.4329339/101‑1 (MQ=20)
                   nnncaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTG            <  SRR4302518.14914176/96‑1 (MQ=24)
                   gttcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTG            <  SRR4302518.3964086/96‑1 (MQ=24)
                   TTTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTG            >  SRR4302518.3015330/1‑101 (MQ=23)
                    nnnaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGT           <  SRR4302518.12117278/97‑1 (MQ=26)
                    TTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGT           <  SRR4302518.6188071/101‑1 (MQ=25)
                    TTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGT           <  SRR4302518.5241394/101‑1 (MQ=25)
                    TTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGT           >  SRR4302518.3348434/1‑101 (MQ=25)
                    TTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGT           <  SRR4302518.5124865/101‑1 (MQ=25)
                    TTCAAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGT           <  SRR4302518.5190948/101‑1 (MQ=25)
                    NNNAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTCTG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTC          <  SRR4302518.9885816/101‑1 (MQ=18)
                    NNNAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTT          <  SRR4302518.9291507/101‑1 (MQ=25)
                     tcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGTTTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTC          >  SRR4302518.3061156/4‑101 (MQ=19)
                     tcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTNNN          >  SRR4302518.9055649/4‑101 (MQ=22)
                     tcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTNNN          >  SRR4302518.14030986/4‑101 (MQ=22)
                     tcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTC          <  SRR4302518.1495681/98‑1 (MQ=27)
                     tcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTC          <  SRR4302518.1823641/98‑1 (MQ=27)
                     tcaAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTC          <  SRR4302518.3146525/98‑1 (MQ=27)
                      caAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG         <  SRR4302518.295536/99‑1 (MQ=29)
                      caAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCATGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG         >  SRR4302518.2840817/3‑101 (MQ=29)
                      AAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGgcgg        >  SRR4302518.3644569/1‑97 (MQ=24)
                      AAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTNNN        >  SRR4302518.13107698/1‑101 (MQ=25)
                      AAAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGAAGCCGAAATGCTGTCGA        >  SRR4302518.2118040/1‑101 (MQ=22)
                        AAAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCNNN       >  SRR4302518.8283886/1‑101 (MQ=27)
                         AAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATG      <  SRR4302518.6669245/101‑1 (MQ=32)
                         AAGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATG      <  SRR4302518.897486/101‑1 (MQ=32)
                         AAGGCCATGCGCTGGAGGCGGTGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCGGAAATGCTGTCGATG      >  SRR4302518.4422904/1‑101 (MQ=23)
                          AGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG     >  SRR4302518.5495458/1‑101 (MQ=34)
                          AGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG     >  SRR4302518.6644713/1‑101 (MQ=34)
                          AGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG     <  SRR4302518.466545/101‑1 (MQ=34)
                          AGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG     >  SRR4302518.4583866/1‑101 (MQ=34)
                          AGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG     >  SRR4302518.3165368/1‑101 (MQ=34)
                          AGGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG     >  SRR4302518.110381/1‑101 (MQ=34)
                           GGCCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC    <  SRR4302518.2965700/101‑1 (MQ=36)
                             CCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGNNN  >  SRR4302518.11275641/1‑101 (MQ=34)
                             CCATGCGCTGGAAGCGG‑‑TGGCGAAGAAA‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGNNN  >  SRR4302518.10510098/1‑101 (MQ=34)
                             CCATGCGCTGGAAGCGG‑‑TGGCG‑‑‑‑AAGCATCTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGG  <  SRR4302518.7312009/101‑1 (MQ=39)
                                                    |                                                                                      
GAAGTGATGGCGGGCGGCGTTTCAAAGGCCATGCGCTGGAAGGC‑‑TGGCG‑‑‑‑AA‑‑‑‑CTGGCTACAGCTGAAGGATTGATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGG  >  NC_000913/4008350‑4008468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: