Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	656,969	A→G	W65R (TGG→CGG)	crcB ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	656,969	0	A	G	100.0%	871.6 / NA	267	W65R (TGG→CGG)	crcB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (152/115); total (152/115)

Only 100 of 274 total aligned reads displayed.

GGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCA  >  NC_000913/656879‑657058

  cccTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACt                                                                                       <  1:1573114/93‑1 (MQ=255)

  cccTCTTGTAACAAAAACACAACTTCGGCAGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTAATTAATCCTTTCCGCACt                                                                                       <  2:2073745/93‑1 (MQ=255)

    ctctTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCTCTgg                                                                                     >  2:5578902/1‑93 (MQ=255)

    ctctTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTgg                                                                                     <  2:6206323/93‑1 (MQ=255)

    ctctTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTgg                                                                                     >  2:4550724/1‑93 (MQ=255)

     tctTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGa                                                                                    >  1:3283924/1‑93 (MQ=255)

       ttGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATc                                                                                  >  2:2420038/1‑93 (MQ=255)

       ttGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATc                                                                                  >  1:1529312/1‑93 (MQ=255)

       ttGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATc                                                                                  >  1:2530803/1‑93 (MQ=255)

         gTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCaa                                                                                <  1:2854638/93‑1 (MQ=255)

          tAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGTTTGTTAGGCCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAAt                                                                               <  2:5229213/93‑1 (MQ=255)

          tAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAAt                                                                               <  2:818397/93‑1 (MQ=255)

          tAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAAt                                                                               >  1:2363922/1‑93 (MQ=255)

           aaCAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATg                                                                              >  1:430890/1‑93 (MQ=255)

            aCAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTTCGCACTGGATCAATGt                                                                             >  2:2454932/1‑93 (MQ=255)

            aCAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGt                                                                             <  1:3176548/93‑1 (MQ=255)

               aaaaCACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCg                                                                          <  2:5679726/93‑1 (MQ=255)

                aaaCACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGt                                                                         <  1:212392/93‑1 (MQ=255)

                     cctcTTCTGCCGAAAATTTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATcc                                                                    <  2:1568312/90‑1 (MQ=255)

                     ccacTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATcc                                                                    >  2:3509882/1‑93 (MQ=255)

                      cacTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCct                                                                   >  2:1797585/1‑93 (MQ=255)

                       acTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCctg                                                                  >  1:743631/1‑93 (MQ=255)

                       acTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCctg                                                                  >  1:511152/1‑93 (MQ=255)

                         ttCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCctgct                                                                >  1:2405526/1‑93 (MQ=255)

                         ttCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCctgct                                                                >  1:2674615/1‑93 (MQ=255)

                         tgcTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCctgct                                                                <  2:3816638/91‑1 (MQ=255)

                            tGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGac                                                             >  1:180418/1‑92 (MQ=255)

                               cGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCa                                                          >  2:2605455/1‑93 (MQ=255)

                               cGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCa                                                          >  1:4696851/1‑93 (MQ=255)

                               cGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGCGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCa                                                          >  1:6189719/1‑93 (MQ=255)

                                 aaaaTGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATg                                                        >  2:2822702/1‑93 (MQ=255)

                                 aaaaTGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATg                                                        >  1:4112801/1‑93 (MQ=255)

                                  aaaTGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGc                                                       <  2:5522515/93‑1 (MQ=255)

                                  aaaTGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGc                                                       <  1:1708946/93‑1 (MQ=255)

                                    aTGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGCTCGTCATCCTGCTGAACCATGCGa                                                     <  2:6073214/93‑1 (MQ=255)

                                     tGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGaa                                                    <  1:3484047/93‑1 (MQ=255)

                                     tGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGaa                                                    <  2:744184/93‑1 (MQ=255)

                                     tGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTCGATCAATGTTAGTCATCCTGCTGAACCATGCGaa                                                    >  1:3107161/1‑93 (MQ=255)

                                        tGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcc                                                 <  1:6054210/93‑1 (MQ=255)

                                        tGAGAAGGTGGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcc                                                 <  2:5390274/93‑1 (MQ=255)

                                         gagaAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcct                                                >  2:314887/1‑93 (MQ=255)

                                          agaAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtccta                                               <  2:1465122/93‑1 (MQ=255)

                                          agaAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtccta                                               <  2:2345605/93‑1 (MQ=255)

                                            aaGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctatt                                             >  1:6249779/1‑93 (MQ=255)

                                            aaGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctatt                                             >  2:5876527/1‑93 (MQ=255)

                                              ggTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctattcc                                           >  1:944857/1‑93 (MQ=255)

                                              ggTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctattcc                                           <  1:5069499/93‑1 (MQ=255)

                                              ggTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctattcc                                           <  2:3022664/93‑1 (MQ=255)

                                              ggTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctattcc                                           <  2:3427176/93‑1 (MQ=255)

                                                 tgttAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAtcctattcctat                                        <  1:993806/93‑1 (MQ=255)

                                                  gttAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatg                                       >  2:4811551/1‑93 (MQ=255)

                                                  gttAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatg                                       >  2:1126585/1‑93 (MQ=255)

                                                  gttAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatg                                       >  2:3590979/1‑93 (MQ=255)

                                                  gtaaGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatg                                       <  1:2192791/90‑1 (MQ=255)

                                                   ttAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatga                                      >  2:1777117/1‑93 (MQ=255)

                                                   ttAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatga                                      >  2:4920948/1‑93 (MQ=255)

                                                    tAGACCGCCACAAAATCCGGTGGTGATTAATCCTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatgat                                     <  1:5687853/93‑1 (MQ=255)

                                                    tAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAGCCATGCGAATCCTATTCCTatgat                                     <  2:3266746/93‑1 (MQ=255)

                                                    tAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatgat                                     >  1:3642385/1‑93 (MQ=255)

                                                     aGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTatgatg                                    <  2:3755870/93‑1 (MQ=255)

                                                      gACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTAtgatga                                   >  1:116562/1‑93 (MQ=255)

                                                       aCCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGaa                                  >  1:1411693/1‑93 (MQ=255)

                                                        ccGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAAt                                 >  2:5987319/1‑93 (MQ=255)

                                                        ccGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAAt                                 <  2:3352441/93‑1 (MQ=255)

                                                          gCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGc                               >  1:1288176/1‑93 (MQ=255)

                                                          gCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGc                               >  1:4939095/1‑93 (MQ=255)

                                                             acaAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGcccc                            >  2:865552/1‑93 (MQ=255)

                                                             acaAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGcccc                            >  1:1358178/1‑93 (MQ=255)

                                                             acaAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGcccc                            <  1:282617/93‑1 (MQ=255)

                                                              caAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCa                           >  2:2527434/1‑93 (MQ=255)

                                                                aaaTCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAAt                         <  2:1932495/93‑1 (MQ=255)

                                                                aaaTCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAAt                         >  2:5136628/1‑93 (MQ=255)

                                                                 aaTCCGGTGGTGATTAATACTTTTCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATc                        >  1:1099227/1‑93 (MQ=255)

                                                                  aTCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCa                       <  2:4410916/93‑1 (MQ=255)

                                                                  aTCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCa                       <  1:3786364/93‑1 (MQ=255)

                                                                   tCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAg                      <  1:5632925/93‑1 (MQ=255)

                                                                      ggtggtGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAggct                   >  2:4024744/1‑91 (MQ=255)

                                                                      ggtggtGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGtt                   <  2:1611917/93‑1 (MQ=255)

                                                                      ggtggtGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGtt                   >  1:4888197/1‑93 (MQ=255)

                                                                         ggtgATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGc                >  2:5109765/1‑93 (MQ=255)

                                                                         ggtgATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGc                >  1:5392281/1‑93 (MQ=255)

                                                                         ggtgATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGc                <  2:4682698/93‑1 (MQ=255)

                                                                            gATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGt             <  2:5046466/93‑1 (MQ=255)

                                                                             aTTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTc            <  1:2005252/93‑1 (MQ=255)

                                                                               tAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAg          >  1:3021396/1‑93 (MQ=255)

                                                                               tAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAg          >  1:3548064/1‑93 (MQ=255)

                                                                               tAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAg          <  1:2057895/93‑1 (MQ=255)

                                                                               tAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAg          >  1:1853131/1‑93 (MQ=255)

                                                                               tAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAg          >  1:4486138/1‑93 (MQ=255)

                                                                                aaTACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGc         >  1:5081383/1‑93 (MQ=255)

                                                                                aaTACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGc         <  1:5949554/93‑1 (MQ=255)

                                                                                aaTACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGc         <  1:2420038/93‑1 (MQ=255)

                                                                                 aTACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCg        >  2:2126551/1‑93 (MQ=255)

                                                                                 aTACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCg        <  2:719652/93‑1 (MQ=255)

                                                                                  tACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGt       <  2:5626120/93‑1 (MQ=255)

                                                                                  tACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGt       >  1:2746635/1‑93 (MQ=255)

                                                                                  tACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGt       <  2:5324919/93‑1 (MQ=255)

                                                                                  tACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGt       >  1:3862366/1‑93 (MQ=255)

                                                                                  tACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGt       >  1:4613802/1‑93 (MQ=255)

                                                                                   aCTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTc      <  2:4285525/93‑1 (MQ=255)

GGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCA  >  NC_000913/656879‑657058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCAACGG  >  NC_000913/656876‑657062

AGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCG                                                                                               <  SRR4302533.2948982/94‑1 (MQ=60)

AGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCG                                                                                               >  SRR4302533.3000895/1‑94 (MQ=60)

   GGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCAC                                                                                            >  SRR4302533.989111/1‑94 (MQ=60)

   GGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCAC                                                                                            >  SRR4302533.127551/1‑94 (MQ=60)

   GGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCAC                                                                                            <  SRR4302533.2856680/94‑1 (MQ=60)

   GGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCAC                                                                                            >  SRR4302533.2884242/1‑94 (MQ=60)

    GCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACT                                                                                           >  SRR4302533.4026513/1‑94 (MQ=60)

     CCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTG                                                                                          <  SRR4302533.5070991/94‑1 (MQ=60)

     CCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTG                                                                                          <  SRR4302533.1582587/94‑1 (MQ=60)

      CCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGG                                                                                         >  SRR4302533.2556048/1‑94 (MQ=60)

      CCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGG                                                                                         >  SRR4302533.1237844/1‑94 (MQ=60)

       CTCTTGTAACAAAAACACCTCTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGA                                                                                        <  SRR4302533.6346668/94‑1 (MQ=60)

       CTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGA                                                                                        >  SRR4302533.3827021/1‑94 (MQ=60)

       CTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGA                                                                                        >  SRR4302533.3304194/1‑94 (MQ=60)

         CTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATC                                                                                      >  SRR4302533.1538509/1‑94 (MQ=60)

         CTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATC                                                                                      >  SRR4302533.3524459/1‑94 (MQ=60)

         CTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATC                                                                                      <  SRR4302533.3722101/94‑1 (MQ=60)

         CTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATC                                                                                      >  SRR4302533.2546385/1‑94 (MQ=60)

           TGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAA                                                                                    >  SRR4302533.6280884/1‑94 (MQ=60)

            GTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAAT                                                                                   >  SRR4302533.2378543/1‑94 (MQ=60)

            GTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAAT                                                                                   <  SRR4302533.2872203/94‑1 (MQ=60)

            GTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAAT                                                                                   <  SRR4302533.325047/94‑1 (MQ=60)

             TAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATG                                                                                  >  SRR4302533.433459/1‑94 (MQ=60)

               ACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTT                                                                                <  SRR4302533.3196087/94‑1 (MQ=60)

                 AAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCG                                                                              <  SRR4302533.2715472/94‑1 (MQ=60)

                 AAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCG                                                                              <  SRR4302533.496699/94‑1 (MQ=60)

                  AAAACCCCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGT                                                                             <  SRR4302533.619185/94‑1 (MQ=60)

                   AAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTC                                                                            <  SRR4302533.3651331/94‑1 (MQ=60)

                   AAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTC                                                                            >  SRR4302533.1525002/1‑94 (MQ=60)

                   AAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTC                                                                            <  SRR4302533.213729/94‑1 (MQ=60)

                     ACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCAT                                                                          >  SRR4302533.233422/1‑94 (MQ=60)

                        CCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCT                                                                       >  SRR4302533.47907/1‑94 (MQ=60)

                        CCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCT                                                                       >  SRR4302533.1631507/1‑94 (MQ=60)

                         CACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTG                                                                      >  SRR4302533.514190/1‑94 (MQ=60)

                         CACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTG                                                                      >  SRR4302533.748007/1‑94 (MQ=60)

                           CTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCT                                                                    >  SRR4302533.2420385/1‑94 (MQ=60)

                           CTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCT                                                                    >  SRR4302533.2691018/1‑94 (MQ=60)

                            TTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTG                                                                   >  SRR4302533.4506114/1‑94 (MQ=60)

                              CTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAC                                                                 >  SRR4302533.181542/1‑94 (MQ=60)

                                 CCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCA                                                              <  SRR4302533.1115076/94‑1 (MQ=60)

                                 CCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCA                                                              >  SRR4302533.4725325/1‑94 (MQ=60)

                                 CCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGCGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCA                                                              >  SRR4302533.6226863/1‑94 (MQ=60)

                                 CCGAAAATGTTGAGAAGGTTATTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCA                                                              <  SRR4302533.1861525/94‑1 (MQ=60)

                                  CGAAAATGTTGAGAAGGTTTTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCAT                                                             <  SRR4302533.1541246/94‑1 (MQ=60)

                                  CGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCAT                                                             <  SRR4302533.5126910/94‑1 (MQ=60)

                                  CGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCAT                                                             >  SRR4302533.463188/1‑94 (MQ=60)

                                   GAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATG                                                            >  SRR4302533.4137795/1‑94 (MQ=60)

                                    AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGC                                                           <  SRR4302533.3807494/94‑1 (MQ=60)

                                     AAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCG                                                          <  SRR4302533.1719299/94‑1 (MQ=60)

                                     AAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCG                                                          <  SRR4302533.2066980/94‑1 (MQ=60)

                                       ATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTCGATCAATGTTAGTCATCCTGCTGAACCATGCGAA                                                        >  SRR4302533.3126259/1‑94 (MQ=60)

                                        TGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAT                                                       >  SRR4302533.6201192/1‑94 (MQ=60)

                                        TGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAAT                                                       <  SRR4302533.3505535/94‑1 (MQ=60)

                                         GTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATC                                                      >  SRR4302533.511654/1‑94 (MQ=60)

                                         GTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATC                                                      >  SRR4302533.5230696/1‑94 (MQ=60)

                                           TGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCT                                                    <  SRR4302533.6090874/94‑1 (MQ=60)

                                            GAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTA                                                   >  SRR4302533.2224459/1‑94 (MQ=60)

                                            GAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTA                                                   <  SRR4302533.3016692/94‑1 (MQ=60)

                                            GAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGATGAACAATGCGAATCCTA                                                   >  SRR4302533.3379591/1‑94 (MQ=60)

                                             AGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTAT                                                  >  SRR4302533.5525493/1‑94 (MQ=60)

                                             AGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTAT                                                  <  SRR4302533.821600/94‑1 (MQ=60)

                                              GAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATT                                                 >  SRR4302533.6287170/1‑94 (MQ=60)

                                               AAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTC                                                <  SRR4302533.4968119/94‑1 (MQ=60)

                                                AGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCC                                               >  SRR4302533.950414/1‑94 (MQ=60)

                                                 GGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCT                                              <  SRR4302533.5100109/94‑1 (MQ=60)

                                                 GGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCT                                              >  SRR4302533.605565/1‑94 (MQ=60)

                                                 GGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCT                                              >  SRR4302533.1396283/1‑94 (MQ=60)

                                                  GTTGTTAGCCCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTA                                             <  SRR4302533.53022/94‑1 (MQ=60)

                                                  GTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTA                                             >  SRR4302533.5490328/1‑94 (MQ=60)

                                                   TTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTAT                                            >  SRR4302533.837427/1‑94 (MQ=60)

                                                    TGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATG                                           <  SRR4302533.999615/94‑1 (MQ=60)

                                                     GTAAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGA                                          <  SRR4302533.2206304/94‑1 (MQ=60)

                                                      TTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGAT                                         >  SRR4302533.1316122/1‑94 (MQ=60)

                                                      TTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGAT                                         >  SRR4302533.3664781/1‑94 (MQ=60)

                                                       TAGACCGCCACAAAATCCGGTGGTGATTAATCCTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATG                                        <  SRR4302533.5722207/94‑1 (MQ=60)

                                                       TAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATG                                        <  SRR4302533.1932540/94‑1 (MQ=60)

                                                        AGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGA                                       >  SRR4302533.117305/1‑94 (MQ=60)

                                                         GACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAA                                      >  SRR4302533.1420228/1‑94 (MQ=60)

                                                         GACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAA                                      <  SRR4302533.3605050/94‑1 (MQ=60)

                                                          ACCGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAAT                                     <  SRR4302533.1574976/94‑1 (MQ=60)

                                                            CGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGC                                   >  SRR4302533.1295927/1‑94 (MQ=60)

                                                            CGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGC                                   >  SRR4302533.6059462/1‑94 (MQ=60)

                                                            CGCCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGC                                   >  SRR4302533.4968995/1‑94 (MQ=60)

                                                              CCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCC                                 >  SRR4302533.1842938/1‑94 (MQ=60)

                                                              CCACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCC                                 >  SRR4302533.3842953/1‑94 (MQ=60)

                                                               CACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCC                                >  SRR4302533.1366342/1‑94 (MQ=60)

                                                               CACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCC                                <  SRR4302533.2108289/94‑1 (MQ=60)

                                                               CACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCC                                >  SRR4302533.2193756/1‑94 (MQ=60)

                                                               CACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCC                                >  SRR4302533.1524764/1‑94 (MQ=60)

                                                                ACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCA                               <  SRR4302533.284347/94‑1 (MQ=60)

                                                                ACAAAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCA                               >  SRR4302533.4186944/1‑94 (MQ=60)

                                                                   AAATCCGGTGGTGATTAATACTTTTCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATC                            >  SRR4302533.1105742/1‑94 (MQ=60)

                                                                   AAATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATC                            <  SRR4302533.249675/94‑1 (MQ=60)

                                                                     ATCCGGTGGTGATTAATACTTTCTGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAG                          <  SRR4302533.2422889/94‑1 (MQ=60)

                                                                     ATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAG                          >  SRR4302533.2458340/1‑94 (MQ=60)

                                                                     ATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAG                          <  SRR4302533.3809547/94‑1 (MQ=60)

                                                                     ATCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGATGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAG                          <  SRR4302533.4470969/94‑1 (MQ=60)

                                                                      TCCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGG                         <  SRR4302533.5666988/94‑1 (MQ=60)

                                                                       CCGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGT                        >  SRR4302533.2569176/1‑94 (MQ=60)

                                                                        CGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTT                       >  SRR4302533.4917814/1‑94 (MQ=60)

                                                                        CGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTT                       <  SRR4302533.2382620/94‑1 (MQ=60)

                                                                        CGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTT                       >  SRR4302533.3438402/1‑94 (MQ=60)

                                                                        CGGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTT                       <  SRR4302533.2856823/94‑1 (MQ=60)

                                                                         GGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTT                      >  SRR4302533.3121046/1‑94 (MQ=60)

                                                                         GGTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTT                      >  SRR4302533.2199283/1‑94 (MQ=60)

                                                                          GTGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTG                     <  SRR4302533.5103980/94‑1 (MQ=60)

                                                                           TGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGC                    >  SRR4302533.693549/1‑94 (MQ=60)

                                                                           TGGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGC                    >  SRR4302533.5424678/1‑94 (MQ=60)

                                                                            GGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCT                   <  SRR4302533.1350339/94‑1 (MQ=60)

                                                                            GGTGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCT                   <  SRR4302533.1613720/94‑1 (MQ=60)

                                                                            GGTGATTAATAATTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCT                   <  SRR4302533.2692885/94‑1 (MQ=60)

                                                                              TGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGT                 <  SRR4302533.4181712/94‑1 (MQ=60)

                                                                              TGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGT                 >  SRR4302533.5716690/1‑94 (MQ=60)

                                                                              TGATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGT                 >  SRR4302533.1951810/1‑94 (MQ=60)

                                                                               GATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTC                >  SRR4302533.2783097/1‑94 (MQ=60)

                                                                                ATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCA               >  SRR4302533.5047843/1‑94 (MQ=60)

                                                                                ATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCA               <  SRR4302533.2017602/94‑1 (MQ=60)

                                                                                ATTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGGTTGCTGTCA               >  SRR4302533.5847593/1‑94 (MQ=60)

                                                                                 TTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAG              >  SRR4302533.4513297/1‑94 (MQ=60)

                                                                                 TTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAG              >  SRR4302533.992943/1‑94 (MQ=60)

                                                                                 TTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAG              >  SRR4302533.1864429/1‑94 (MQ=60)

                                                                                 TTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAG              >  SRR4302533.3569929/1‑94 (MQ=60)

                                                                                 TTAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAG              >  SRR4302533.3039884/1‑94 (MQ=60)

                                                                                  TAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGC             <  SRR4302533.2070585/94‑1 (MQ=60)

                                                                                  TAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGC             >  SRR4302533.5935735/1‑94 (MQ=60)

                                                                                  TAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGC             >  SRR4302533.5112094/1‑94 (MQ=60)

                                                                                  TAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGC             <  SRR4302533.4696949/94‑1 (MQ=60)

                                                                                  TAATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGC             <  SRR4302533.3042581/94‑1 (MQ=60)

                                                                                   AATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCG            >  SRR4302533.204600/1‑94 (MQ=60)

                                                                                   AATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCG            <  SRR4302533.2434984/94‑1 (MQ=60)

                                                                                   AATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCG            <  SRR4302533.5985537/94‑1 (MQ=60)

                                                                                   AATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCG            <  SRR4302533.2399049/94‑1 (MQ=60)

                                                                                   AATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCG            >  SRR4302533.1805612/1‑94 (MQ=60)

                                                                                   AATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCG            >  SRR4302533.4528541/1‑94 (MQ=60)

                                                                                    ATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGT           >  SRR4302533.3885941/1‑94 (MQ=60)

                                                                                    ATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGT           >  SRR4302533.4641750/1‑94 (MQ=60)

                                                                                    ATACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGT           >  SRR4302533.2763474/1‑94 (MQ=60)

                                                                                      ACTTTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCC         >  SRR4302533.4818165/1‑94 (MQ=60)

                                                                                         TTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCA      >  SRR4302533.3128305/1‑94 (MQ=60)

                                                                                         TTCCGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCA      <  SRR4302533.3220433/94‑1 (MQ=60)

                                                                                            CGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCAACG   >  SRR4302533.3270986/1‑94 (MQ=60)

                                                                                            CGCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCAACG   <  SRR4302533.1820061/94‑1 (MQ=60)

                                                                                             GCACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCAACGG  >  SRR4302533.2952593/1‑94 (MQ=60)

AGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCCAACGG  >  NC_000913/656876‑657062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`