Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	786,807	A→G	T4T (ACT→ACC)	gpmA ←	phosphoglyceromutase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	786,807	0	A	G	100.0%	964.1 / NA	292	T4T (ACT→ACC)	gpmA	phosphoglyceromutase 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (123/169); total (123/169)

Only 100 of 294 total aligned reads displayed.

GCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTAGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACG  >  NC_000913/786717‑786896

gCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGt                                                                                         >  1:2773017/1‑93 (MQ=255)

gCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGt                                                                                         >  2:5445464/1‑93 (MQ=255)

 ccTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGtt                                                                                        >  2:5667589/1‑93 (MQ=255)

   tttCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTAc                                                                                      <  2:254176/93‑1 (MQ=255)

   tttCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTAc                                                                                      >  2:68582/1‑93 (MQ=255)

   tttCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTAc                                                                                      >  2:1525418/1‑93 (MQ=255)

        cagacagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCa                                                                                 <  1:316536/93‑1 (MQ=255)

          gacagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCata                                                                               <  1:5625128/93‑1 (MQ=255)

          gacagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCata                                                                               <  1:2644002/93‑1 (MQ=255)

          gacagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCata                                                                               >  2:4162347/1‑93 (MQ=255)

          gacagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCata                                                                               <  1:1215064/93‑1 (MQ=255)

           acagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCatat                                                                              <  2:4134008/93‑1 (MQ=255)

            cagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCAtata                                                                             <  1:3911791/93‑1 (MQ=255)

            cagaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCAtata                                                                             <  2:2372360/93‑1 (MQ=255)

             agaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCAtatat                                                                            >  2:2073037/1‑92 (MQ=255)

              gaTCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAtact                                                                           >  2:5931345/1‑93 (MQ=255)

                tCCAAGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAtactta                                                                         >  2:1131423/1‑93 (MQ=255)

                 ccACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAtacttac                                                                        <  1:827550/93‑1 (MQ=255)

                 ccACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAtacttac                                                                        <  2:5759766/93‑1 (MQ=255)

                   aCGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTActc                                                                      >  2:1891326/1‑93 (MQ=255)

                   aCGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTActc                                                                      >  1:6014497/1‑93 (MQ=255)

                   aCGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTActc                                                                      >  1:448281/1‑93 (MQ=255)

                   aCGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTActc                                                                      >  2:2877027/1‑93 (MQ=255)

                      tcgtACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTActcctc                                                                   >  1:4239797/1‑93 (MQ=255)

                      tcgtACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTActcctc                                                                   >  2:4395173/1‑93 (MQ=255)

                          aCCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAat                                                               <  2:5050381/93‑1 (MQ=255)

                          aCCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAat                                                               >  1:5257647/1‑93 (MQ=255)

                            cAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAatca                                                             >  2:2211169/1‑93 (MQ=255)

                            cAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAatca                                                             <  2:370865/93‑1 (MQ=255)

                            cAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAatca                                                             >  1:4592847/1‑93 (MQ=255)

                            cAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAatca                                                             >  2:5925609/1‑93 (MQ=255)

                             aaCCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAatcat                                                            >  2:4680912/1‑93 (MQ=255)

                               ccGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCt                                                          <  1:1096663/93‑1 (MQ=255)

                                  gTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCtttt                                                       <  2:3373246/93‑1 (MQ=255)

                                    gAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTaa                                                     <  1:3700942/93‑1 (MQ=255)

                                    gAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTaa                                                     <  1:4982271/93‑1 (MQ=255)

                                    gAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTaa                                                     >  2:5333341/1‑93 (MQ=255)

                                    gAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTaa                                                     <  1:6129220/93‑1 (MQ=255)

                                     aaaCGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAAt                                                    <  2:1443163/93‑1 (MQ=255)

                                      aaCGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATg                                                   <  1:1406406/93‑1 (MQ=255)

                                      aaCGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATg                                                   >  1:2554175/1‑93 (MQ=255)

                                        cGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGat                                                 <  1:5122579/93‑1 (MQ=255)

                                         ggTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGata                                                <  1:2051372/93‑1 (MQ=255)

                                          gTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGataa                                               <  2:3080857/93‑1 (MQ=255)

                                           ttttCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGataat                                              >  2:3031226/1‑93 (MQ=255)

                                           ttttCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGataat                                              <  2:2146757/93‑1 (MQ=255)

                                            tttCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGataata                                             >  1:5914381/1‑93 (MQ=255)

                                            tttCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGataata                                             >  1:2873311/1‑93 (MQ=255)

                                            tttCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGataata                                             <  1:2365412/93‑1 (MQ=255)

                                             ttCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGAtaataa                                            <  2:2715409/93‑1 (MQ=255)

                                              tCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATaataat                                           <  2:1585138/93‑1 (MQ=255)

                                               cTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAAtt                                          >  2:4018208/1‑93 (MQ=255)

                                                tttGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATtc                                         <  2:4567066/93‑1 (MQ=255)

                                                tttGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATtc                                         >  2:1628353/1‑93 (MQ=255)

                                                 ttGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATtct                                        >  2:1769992/1‑93 (MQ=255)

                                                   gTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCa                                      <  1:3483116/93‑1 (MQ=255)

                                                   gTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCa                                      <  1:2137406/93‑1 (MQ=255)

                                                    ttCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAt                                     <  2:4833092/93‑1 (MQ=255)

                                                    ttCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAt                                     >  2:3311640/1‑93 (MQ=255)

                                                     tCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAtt                                    <  1:2513570/93‑1 (MQ=255)

                                                      ccACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATta                                   >  2:5385177/1‑93 (MQ=255)

                                                       cACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATtat                                  <  2:5785489/93‑1 (MQ=255)

                                                       cACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATtat                                  >  1:1641122/1‑93 (MQ=255)

                                                       cACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATtat                                  >  1:5774786/1‑93 (MQ=255)

                                                       cACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATtat                                  >  1:4862539/1‑93 (MQ=255)

                                                        aCTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATtata                                 <  2:2224337/93‑1 (MQ=255)

                                                         cTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTatat                                <  1:5424950/93‑1 (MQ=255)

                                                         cTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTATCATTatat                                <  1:5068153/93‑1 (MQ=255)

                                                           gACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTg                              >  1:637337/1‑93 (MQ=255)

                                                            aCTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGc                             >  2:3974374/1‑93 (MQ=255)

                                                             cTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGcc                            >  1:1468703/1‑93 (MQ=255)

                                                             cTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGcc                            >  1:1031025/1‑93 (MQ=255)

                                                              tttCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCcg                           <  1:3119185/93‑1 (MQ=255)

                                                              tttCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCcg                           <  2:2512208/93‑1 (MQ=255)

                                                                  gCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGcgac                       >  1:744610/1‑93 (MQ=255)

                                                                   ccATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGcgacg                      >  1:1549046/1‑93 (MQ=255)

                                                                    cATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGcgacga                     <  1:3235354/93‑1 (MQ=255)

                                                                    cATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGcgacga                     <  1:5295958/93‑1 (MQ=255)

                                                                    cATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGcgacga                     >  2:1184817/1‑93 (MQ=255)

                                                                    cATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGcgacga                     >  2:3227606/1‑93 (MQ=255)

                                                                     aTGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGaa                    <  2:1292515/93‑1 (MQ=255)

                                                                     aTGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGaa                    <  2:826875/93‑1 (MQ=255)

                                                                       gACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGc                  <  2:5151273/93‑1 (MQ=255)

                                                                         cGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCaa                <  1:5523418/93‑1 (MQ=255)

                                                                         cGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCaa                <  1:1613699/93‑1 (MQ=255)

                                                                          gaaccagaaccaGCCTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAAc               >  2:677948/1‑93 (MQ=255)

                                                                            accagaaccagCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAg             <  2:230008/93‑1 (MQ=255)

                                                                               agaactagCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGTAACAGCaa          <  2:6134161/93‑1 (MQ=255)

                                                                               agaaccagCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCaa          <  2:943468/93‑1 (MQ=255)

                                                                                  accagCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGc       >  2:4958625/1‑93 (MQ=255)

                                                                                  accagCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGc       <  1:4027908/93‑1 (MQ=255)

                                                                                  accagCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGc       >  1:5569514/1‑93 (MQ=255)

                                                                                    cagCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCtt     <  2:2661142/93‑1 (MQ=255)

                                                                                     agCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTa    <  1:2312005/93‑1 (MQ=255)

                                                                                     agCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTa    <  1:3353424/93‑1 (MQ=255)

                                                                                     agCTTGCTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTa    <  2:6266334/93‑1 (MQ=255)

                                                                                      gCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAc   >  1:189682/1‑93 (MQ=255)

                                                                                      gCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAc   >  1:2965127/1‑93 (MQ=255)

                                                                                      gCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAc   <  2:6008688/93‑1 (MQ=255)

                                                                                      gCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAc   <  2:3140482/93‑1 (MQ=255)

GCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTAGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACG  >  NC_000913/786717‑786896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TACGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTAGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATA  >  NC_000913/786714‑786900

TACGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTG                                                                                               <  SRR4302533.5785399/94‑1 (MQ=60)

TACGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTG                                                                                               <  SRR4302533.1292293/94‑1 (MQ=60)

 ACGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGG                                                                                              >  SRR4302533.3927012/1‑94 (MQ=60)

  CGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGT                                                                                             >  SRR4302533.3783381/1‑94 (MQ=60)

  CGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGT                                                                                             >  SRR4302533.5357097/1‑94 (MQ=60)

  CGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGT                                                                                             <  SRR4302533.5479377/94‑1 (MQ=60)

  CGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGT                                                                                             <  SRR4302533.2244871/94‑1 (MQ=60)

  CGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGT                                                                                             >  SRR4302533.2790037/1‑94 (MQ=60)

   GCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTT                                                                                            <  SRR4302533.4596384/94‑1 (MQ=60)

   GCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTT                                                                                            >  SRR4302533.1585444/1‑94 (MQ=60)

    CCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTA                                                                                           <  SRR4302533.4155729/94‑1 (MQ=60)

    CCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTA                                                                                           >  SRR4302533.5294833/1‑94 (MQ=60)

     CTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTAC                                                                                          <  SRR4302533.5097338/94‑1 (MQ=60)

      TTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACA                                                                                         <  SRR4302533.5574696/94‑1 (MQ=60)

      TTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACA                                                                                         <  SRR4302533.5282389/94‑1 (MQ=60)

       TTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAG                                                                                        >  SRR4302533.2134520/1‑94 (MQ=60)

       TTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAG                                                                                        >  SRR4302533.5818894/1‑94 (MQ=60)

         CTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCC                                                                                      <  SRR4302533.1558005/94‑1 (MQ=60)

          TCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCA                                                                                     >  SRR4302533.6140274/1‑94 (MQ=60)

           CAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCAT                                                                                    <  SRR4302533.1648492/94‑1 (MQ=60)

           CAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCAT                                                                                    <  SRR4302533.318474/94‑1 (MQ=60)

           CAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCAT                                                                                    >  SRR4302533.4312727/1‑94 (MQ=60)

            AGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATA                                                                                   >  SRR4302533.621956/1‑94 (MQ=60)

            AGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATA                                                                                   >  SRR4302533.621955/1‑94 (MQ=60)

             GGCAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAT                                                                                  <  SRR4302533.2557069/94‑1 (MQ=60)

             GACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAT                                                                                  <  SRR4302533.1222361/94‑1 (MQ=60)

             GACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAT                                                                                  <  SRR4302533.5659126/94‑1 (MQ=60)

             GACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAT                                                                                  <  SRR4302533.3882566/94‑1 (MQ=60)

             GACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATAT                                                                                  <  SRR4302533.2660248/94‑1 (MQ=60)

               CAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATAC                                                                                >  SRR4302533.4024267/1‑94 (MQ=60)

               CAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATAC                                                                                <  SRR4302533.3935681/94‑1 (MQ=60)

                 GATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTT                                                                              <  SRR4302533.3465544/94‑1 (MQ=60)

                   TCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTAC                                                                            <  SRR4302533.1924534/94‑1 (MQ=60)

                    CCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACT                                                                           <  SRR4302533.832406/94‑1 (MQ=60)

                     CACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTC                                                                          >  SRR4302533.815544/1‑94 (MQ=60)

                     CACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTC                                                                          >  SRR4302533.450962/1‑94 (MQ=60)

                     CACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTC                                                                          >  SRR4302533.6050944/1‑94 (MQ=60)

                      ACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCC                                                                         <  SRR4302533.5066993/94‑1 (MQ=60)

                      ACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCC                                                                         <  SRR4302533.3939528/94‑1 (MQ=60)

                       CGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCT                                                                        <  SRR4302533.737970/94‑1 (MQ=60)

                        GTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTC                                                                       >  SRR4302533.3235642/1‑94 (MQ=60)

                        GTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTC                                                                       >  SRR4302533.4265402/1‑94 (MQ=60)

                         TCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCA                                                                      <  SRR4302533.2478415/94‑1 (MQ=60)

                           GTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAA                                                                    <  SRR4302533.1060646/94‑1 (MQ=60)

                           GTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAA                                                                    >  SRR4302533.2972666/1‑94 (MQ=60)

                            TACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAAT                                                                   <  SRR4302533.1213640/94‑1 (MQ=60)

                            TACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAAT                                                                   <  SRR4302533.778445/94‑1 (MQ=60)

                            TACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAAT                                                                   >  SRR4302533.5289218/1‑94 (MQ=60)

                             TCCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATC                                                                  <  SRR4302533.4255359/94‑1 (MQ=60)

                             ACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATC                                                                  <  SRR4302533.2266817/94‑1 (MQ=60)

                              CCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCA                                                                 >  SRR4302533.4620667/1‑94 (MQ=60)

                              CCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCA                                                                 >  SRR4302533.1632345/1‑94 (MQ=60)

                              CCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCA                                                                 <  SRR4302533.2351586/94‑1 (MQ=60)

                               CAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGACCCACCTTGGTTACAGCCATATCCTTACTCCTCAAATCAT                                                                <  SRR4302533.5124726/94‑1 (MQ=60)

                               CAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCAT                                                                <  SRR4302533.2073670/94‑1 (MQ=60)

                                AACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATC                                                               <  SRR4302533.5801231/94‑1 (MQ=60)

                                  CCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTT                                                             <  SRR4302533.1103158/94‑1 (MQ=60)

                                       GAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAAT                                                        <  SRR4302533.3723671/94‑1 (MQ=60)

                                       GAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAAT                                                        <  SRR4302533.6166155/94‑1 (MQ=60)

                                       GAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAAT                                                        <  SRR4302533.5012479/94‑1 (MQ=60)

                                        AAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATG                                                       <  SRR4302533.2925741/94‑1 (MQ=60)

                                        AAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATG                                                       >  SRR4302533.2569889/1‑94 (MQ=60)

                                         AACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGA                                                      <  SRR4302533.1414912/94‑1 (MQ=60)

                                         AACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGA                                                      >  SRR4302533.6083779/1‑94 (MQ=60)

                                         AACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGA                                                      <  SRR4302533.6028185/94‑1 (MQ=60)

                                          ACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGAT                                                     >  SRR4302533.3709982/1‑94 (MQ=60)

                                           CGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATA                                                    <  SRR4302533.5153530/94‑1 (MQ=60)

                                           CGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATA                                                    <  SRR4302533.1492536/94‑1 (MQ=60)

                                           CGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATA                                                    >  SRR4302533.1308084/1‑94 (MQ=60)

                                            GGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAA                                                   <  SRR4302533.2064030/94‑1 (MQ=60)

                                              TTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATA                                                 <  SRR4302533.2702634/94‑1 (MQ=60)

                                              TTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATA                                                 >  SRR4302533.5950121/1‑94 (MQ=60)

                                              TTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATA                                                 >  SRR4302533.2890991/1‑94 (MQ=60)

                                               TTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAA                                                <  SRR4302533.2380046/94‑1 (MQ=60)

                                               TTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAA                                                <  SRR4302533.2597174/94‑1 (MQ=60)

                                                TTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAAT                                               >  SRR4302533.4762055/1‑94 (MQ=60)

                                                 TCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATT                                              <  SRR4302533.4314686/94‑1 (MQ=60)

                                                   TTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCT                                            <  SRR4302533.1395358/94‑1 (MQ=60)

                                                    TTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTC                                           <  SRR4302533.3076788/94‑1 (MQ=60)

                                                    TTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTC                                           <  SRR4302533.2537395/94‑1 (MQ=60)

                                                    TTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTC                                           >  SRR4302533.1596685/1‑94 (MQ=60)

                                                      GTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAT                                         >  SRR4302533.1765901/1‑94 (MQ=60)

                                                      GTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAT                                         <  SRR4302533.2150587/94‑1 (MQ=60)

                                                      GTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAT                                         <  SRR4302533.3504602/94‑1 (MQ=60)

                                                      GTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAT                                         <  SRR4302533.5629300/94‑1 (MQ=60)

                                                      GTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCAT                                         <  SRR4302533.56778/94‑1 (MQ=60)

                                                       TTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATT                                        >  SRR4302533.2777877/1‑94 (MQ=60)

                                                        TCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTA                                       >  SRR4302533.2206483/1‑94 (MQ=60)

                                                        TCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTA                                       <  SRR4302533.2529059/94‑1 (MQ=60)

                                                         CCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTAT                                      >  SRR4302533.1651064/1‑94 (MQ=60)

                                                         CCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTAT                                      >  SRR4302533.3276204/1‑94 (MQ=60)

                                                         CCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTAT                                      >  SRR4302533.5809659/1‑94 (MQ=60)

                                                         CCACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTAT                                      >  SRR4302533.4892010/1‑94 (MQ=60)

                                                           ACTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATAT                                    >  SRR4302533.3208586/1‑94 (MQ=60)

                                                            CTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATT                                   <  SRR4302533.5457622/94‑1 (MQ=60)

                                                            CTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATT                                   >  SRR4302533.142996/1‑94 (MQ=60)

                                                            CTGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTATCATTATATT                                   <  SRR4302533.5098759/94‑1 (MQ=60)

                                                             TGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTG                                  >  SRR4302533.641087/1‑94 (MQ=60)

                                                             TGACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTG                                  >  SRR4302533.4540253/1‑94 (MQ=60)

                                                               ACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCC                                <  SRR4302533.5478273/94‑1 (MQ=60)

                                                               ACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCC                                <  SRR4302533.3534659/94‑1 (MQ=60)

                                                               ACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCC                                >  SRR4302533.1037089/1‑94 (MQ=60)

                                                               ACTTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCC                                >  SRR4302533.1477558/1‑94 (MQ=60)

                                                               AATTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCC                                <  SRR4302533.332507/94‑1 (MQ=60)

                                                                 TTTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGC                              <  SRR4302533.3138369/94‑1 (MQ=60)

                                                                  TTCGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCG                             <  SRR4302533.5110697/94‑1 (MQ=60)

                                                                    CGCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGAC                           >  SRR4302533.748993/1‑94 (MQ=60)

                                                                     GCCATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACG                          >  SRR4302533.1558384/1‑94 (MQ=60)

                                                                       CATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAA                        <  SRR4302533.5327678/94‑1 (MQ=60)

                                                                       CATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAA                        >  SRR4302533.5848528/1‑94 (MQ=60)

                                                                       CATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAA                        <  SRR4302533.2843058/94‑1 (MQ=60)

                                                                       CATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAA                        <  SRR4302533.3255289/94‑1 (MQ=60)

                                                                        ATGACGAACCAGAACCAGCTTGGTTATAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAG                       <  SRR4302533.1439066/94‑1 (MQ=60)

                                                                        ATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAG                       >  SRR4302533.5497040/1‑94 (MQ=60)

                                                                        ATGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAG                       <  SRR4302533.1138151/94‑1 (MQ=60)

                                                                         TGACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGC                      <  SRR4302533.2989362/94‑1 (MQ=60)

                                                                          GANGAANCAGAACCAGCTTGGTNACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCA                     <  SRR4302533.5005955/94‑1 (MQ=60)

                                                                           ACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAA                    <  SRR4302533.1832413/94‑1 (MQ=60)

                                                                           ACGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAA                    >  SRR4302533.347473/1‑94 (MQ=60)

                                                                            CGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAAC                   <  SRR4302533.5556768/94‑1 (MQ=60)

                                                                            CGAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAAC                   <  SRR4302533.1623479/94‑1 (MQ=60)

                                                                             GAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACA                  <  SRR4302533.5598665/94‑1 (MQ=60)

                                                                             GAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACA                  <  SRR4302533.3183942/94‑1 (MQ=60)

                                                                             GAACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACA                  <  SRR4302533.4983738/94‑1 (MQ=60)

                                                                              AACCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAG                 <  SRR4302533.3143081/94‑1 (MQ=60)

                                                                                CCAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCA               <  SRR4302533.250990/94‑1 (MQ=60)

                                                                                 CAGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAA              >  SRR4302533.2588266/1‑94 (MQ=60)

                                                                                  AGAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAAT             >  SRR4302533.69552/1‑94 (MQ=60)

                                                                                   GAACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATG            <  SRR4302533.5629984/94‑1 (MQ=60)

                                                                                    AACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGC           >  SRR4302533.5603179/1‑94 (MQ=60)

                                                                                     ACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCT          >  SRR4302533.5961111/1‑94 (MQ=60)

                                                                                     ACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCT          <  SRR4302533.4052426/94‑1 (MQ=60)

                                                                                     ACCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCT          <  SRR4302533.2041217/94‑1 (MQ=60)

                                                                                      CCAGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTACCGCGACGAAGCAACAGCAAagatt         >  SRR4302533.4771663/1‑89 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       <  SRR4302533.3374144/94‑1 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       >  SRR4302533.190864/1‑94 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       <  SRR4302533.5356690/94‑1 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       >  SRR4302533.5292871/1‑94 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       <  SRR4302533.2326328/94‑1 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       <  SRR4302533.233425/94‑1 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       <  SRR4302533.4770256/94‑1 (MQ=60)

                                                                                        AGCTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTAC       >  SRR4302533.2983249/1‑94 (MQ=60)

                                                                                          CTTGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGC     >  SRR4302533.930222/1‑94 (MQ=60)

                                                                                            TGGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCAT   <  SRR4302533.5705760/94‑1 (MQ=60)

                                                                                             GGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATA  >  SRR4302533.1233165/1‑94 (MQ=60)

TACGCCTTTCTCAGACAGATCCACGTCGTACCAACCGGTGAAACGGTTTTCTTTGTTCCACTGACTTTCGCCATGACGAACCAGAACCAGCTTAGTTACAGCCATATACTTACTCCTCAAATCATCTTTTAATGATAATAATTCTCATTATATTGCCGCGACGAAGCAACAGCAATGCTTACGCATA  >  NC_000913/786714‑786900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`