Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,198,260 |
A→G |
R115G (AGG→GGG) |
lit → |
Lit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,198,260 | 0 | A | G | 100.0%
| 809.9
/ NA
| 247 | R115G (AGG→GGG) | lit | Lit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (128/119); total (128/119) |
Only 100 of 251 total aligned reads displayed.
TACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACA > NC_000913/1198170‑1198348
|
tACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAggg > 1:6281194/1‑93 (MQ=255)
aCTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGa < 1:6090296/93‑1 (MQ=255)
aaaTCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAAc < 2:4361905/93‑1 (MQ=255)
aaTCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACt > 2:2746737/1‑93 (MQ=255)
aTCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACtt > 2:3868635/1‑93 (MQ=255)
tctcAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTg < 2:2266819/93‑1 (MQ=255)
ctcAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGc < 1:5899732/93‑1 (MQ=255)
ctcAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGc < 2:2115887/93‑1 (MQ=255)
aGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCaaa > 1:4261569/1‑93 (MQ=255)
aaaaTAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAaacaa > 1:3579413/1‑93 (MQ=255)
aaaaTAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAaacaa > 2:349893/1‑93 (MQ=255)
aaaaTAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAaacaa > 2:3792959/1‑93 (MQ=255)
aaaTAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAaacaac < 2:4076312/93‑1 (MQ=255)
aaaTAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAaacaac < 1:3999124/93‑1 (MQ=255)
aaaTAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAaacaac < 1:5635972/93‑1 (MQ=255)
aataatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAacaaca < 1:5953977/93‑1 (MQ=255)
aataatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAacaaca < 1:3096232/93‑1 (MQ=255)
aataatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAacaaca < 1:5723796/93‑1 (MQ=255)
ataatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAACACTTGCAAACAACAg > 1:1669385/1‑93 (MQ=255)
ataatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAg < 1:3635408/93‑1 (MQ=255)
taatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAgg < 1:1983823/93‑1 (MQ=255)
aatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGt < 1:4818925/93‑1 (MQ=255)
aatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGt < 1:4562609/93‑1 (MQ=255)
aatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGt < 2:1237421/93‑1 (MQ=255)
aatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGt < 1:5437975/93‑1 (MQ=255)
aatGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGt < 2:4738575/93‑1 (MQ=255)
atgatgAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGtt < 2:5924168/93‑1 (MQ=255)
atgatgAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGtt > 2:4182268/1‑93 (MQ=255)
atgatgAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGtt < 2:390489/93‑1 (MQ=255)
tgatgaGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTg > 1:3363213/1‑93 (MQ=255)
gatgaGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGc < 1:2519109/93‑1 (MQ=255)
gatgaGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGc > 1:2118387/1‑93 (MQ=255)
atgaGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCg < 1:4416571/93‑1 (MQ=255)
tgaGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGa > 1:1508735/1‑93 (MQ=255)
gaGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGaa < 2:3400192/93‑1 (MQ=255)
gaGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGaa < 1:5219231/93‑1 (MQ=255)
gCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATc < 1:2402212/93‑1 (MQ=255)
aCTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCAt > 2:3604415/1‑93 (MQ=255)
aCTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCAt > 1:780289/1‑93 (MQ=255)
aCTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCAt < 1:972254/93‑1 (MQ=255)
cTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATg > 1:2171882/1‑93 (MQ=255)
cTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATg > 2:3466089/1‑93 (MQ=255)
ttGAGTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGc < 2:1389324/93‑1 (MQ=255)
aTTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTa > 2:691476/1‑93 (MQ=255)
tAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTaaaa < 2:4381806/93‑1 (MQ=255)
aaCAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTaaaaa > 2:1792111/1‑93 (MQ=255)
aCAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTaaaaaa > 2:1107568/1‑93 (MQ=255)
aGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATg > 1:4997873/1‑93 (MQ=255)
aaaaaTAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTccc > 1:130039/1‑93 (MQ=255)
aaaTAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCaa > 1:1037766/1‑93 (MQ=255)
aaaTAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCaa < 1:1950590/93‑1 (MQ=255)
aaaTAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCaa < 2:1870955/93‑1 (MQ=255)
aaTAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAg > 1:6067187/1‑93 (MQ=255)
aTAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGc < 1:4384805/93‑1 (MQ=255)
tAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGcc < 1:5084060/93‑1 (MQ=255)
tAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGcc > 1:4884905/1‑93 (MQ=255)
tAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGcc < 2:2334369/93‑1 (MQ=255)
aGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCa > 2:3114327/1‑93 (MQ=255)
aGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCa < 2:6050573/93‑1 (MQ=255)
aGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCa > 1:5237859/1‑93 (MQ=255)
ggCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAg > 1:4460633/1‑93 (MQ=255)
gCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGa < 1:5313152/93‑1 (MQ=255)
ttAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAg > 2:1153645/1‑93 (MQ=255)
ttAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAg > 1:5065257/1‑93 (MQ=255)
tAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGc < 2:6272724/93‑1 (MQ=255)
aaaaaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCa > 2:251598/1‑93 (MQ=255)
aaaaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCat < 1:621585/93‑1 (MQ=255)
aaaaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCat < 1:4946842/93‑1 (MQ=255)
aaaaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGATGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCat > 2:1324143/1‑93 (MQ=255)
aaaaGTCAGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCat > 1:2728378/1‑93 (MQ=255)
aaaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCata > 2:5313103/1‑93 (MQ=255)
aaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCatct < 2:3972231/93‑3 (MQ=255)
aaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCatat > 1:2074063/1‑93 (MQ=255)
aaGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCatat > 2:5726293/1‑93 (MQ=255)
gTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATAttt > 1:927988/1‑93 (MQ=255)
tCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGCCCCAAGCCAGAAGCATAtttt < 1:5828770/93‑2 (MQ=255)
cTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTAc < 2:2770574/93‑1 (MQ=255)
cTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTAc > 2:3001818/1‑93 (MQ=255)
tgatgaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACa > 2:5597165/1‑93 (MQ=255)
tgatgaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACa > 1:3868364/1‑93 (MQ=255)
gatgaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACaa < 1:2041959/93‑1 (MQ=255)
atgaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAg > 1:4543467/1‑93 (MQ=255)
atgaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAg < 2:4763627/93‑1 (MQ=255)
atgaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAg > 1:1354071/1‑93 (MQ=255)
gaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGa < 1:2002047/93‑1 (MQ=255)
gaACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGa > 2:4911658/1‑93 (MQ=255)
aCTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGaac > 2:5005952/1‑92 (MQ=255)
aCTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAg > 2:4200687/1‑93 (MQ=255)
aCTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAg < 1:3440255/93‑1 (MQ=255)
cttcttAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGc < 1:3526678/93‑1 (MQ=255)
cttAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGaa > 1:1886139/1‑93 (MQ=255)
cttAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGaa < 2:5473892/93‑1 (MQ=255)
cttAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGaa < 1:832365/93‑1 (MQ=255)
tAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAATGAAGCGAAGa > 1:3333839/1‑93 (MQ=255)
tAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGa > 1:1546894/1‑93 (MQ=255)
tAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGa < 1:2124352/93‑1 (MQ=255)
aaTGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACt > 2:1472638/1‑93 (MQ=255)
aTGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTc < 2:3264917/93‑1 (MQ=255)
aTGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTc < 2:634842/93‑1 (MQ=255)
ggCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTcaca > 1:3026940/1‑93 (MQ=255)
|
TACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACA > NC_000913/1198170‑1198348
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTT > NC_000913/1198169‑1198352
|
GTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGG > SRR4302533.6318683/1‑94 (MQ=60)
GTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGG < SRR4302533.4575437/94‑1 (MQ=60)
ACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAA < SRR4302533.6127106/94‑1 (MQ=60)
ACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAA > SRR4302533.2631628/1‑94 (MQ=60)
TCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAA > SRR4302533.3515584/1‑94 (MQ=60)
TCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAA > SRR4302533.1640320/1‑94 (MQ=60)
CCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAA < SRR4302533.4587843/94‑1 (MQ=60)
ATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTG > SRR4302533.808225/1‑94 (MQ=60)
CTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCA > SRR4302533.1248150/1‑94 (MQ=60)
CTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCA < SRR4302533.5935361/94‑1 (MQ=60)
CAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAA > SRR4302533.4287248/1‑94 (MQ=60)
CAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAA < SRR4302533.1968051/94‑1 (MQ=60)
AGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAAC > SRR4302533.5969424/1‑94 (MQ=60)
GAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACA > SRR4302533.2134806/1‑94 (MQ=60)
AAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAA > SRR4302533.3601469/1‑94 (MQ=60)
AAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACA < SRR4302533.5670054/94‑1 (MQ=60)
AAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACA < SRR4302533.4023470/94‑1 (MQ=60)
AAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACA < SRR4302533.1990101/94‑1 (MQ=60)
AATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAACACTTGCAAACAACAG > SRR4302533.1679470/1‑94 (MQ=60)
AATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAG < SRR4302533.5758354/94‑1 (MQ=60)
AATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAG < SRR4302533.5989991/94‑1 (MQ=60)
AATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAG < SRR4302533.3115264/94‑1 (MQ=60)
ATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGG < SRR4302533.5099482/94‑1 (MQ=60)
ATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGG < SRR4302533.3657762/94‑1 (MQ=60)
TAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGT < SRR4302533.1995962/94‑1 (MQ=60)
AATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTT > SRR4302533.5266244/1‑94 (MQ=60)
AATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTT < SRR4302533.4848131/94‑1 (MQ=60)
AATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTT < SRR4302533.4590278/94‑1 (MQ=60)
AATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTT < SRR4302533.5470729/94‑1 (MQ=60)
AATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTT < SRR4302533.1833338/94‑1 (MQ=60)
ATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTG > SRR4302533.3383994/1‑94 (MQ=60)
ATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTG < SRR4302533.502898/94‑1 (MQ=60)
ATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTG < SRR4302533.452382/94‑1 (MQ=60)
ATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTG < SRR4302533.5301956/94‑1 (MQ=60)
TGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGC > SRR4302533.2131451/1‑94 (MQ=60)
GATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAATACTTGCAAACAACAGGTTGCG > SRR4302533.5827535/1‑94 (MQ=60)
GATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCG < SRR4302533.2534631/94‑1 (MQ=60)
ATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGA > SRR4302533.1517831/1‑94 (MQ=60)
ATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGA < SRR4302533.4443274/94‑1 (MQ=60)
TGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAA < SRR4302533.5385218/94‑1 (MQ=60)
GAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAAT < SRR4302533.3956489/94‑1 (MQ=60)
GAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAAT < SRR4302533.5250644/94‑1 (MQ=60)
GAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAAT > SRR4302533.6201031/1‑94 (MQ=60)
GCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCA < SRR4302533.2417047/94‑1 (MQ=60)
CACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCAT < SRR4302533.3572270/94‑1 (MQ=60)
CACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCAT < SRR4302533.5826480/94‑1 (MQ=60)
CACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCAT > SRR4302533.784887/1‑94 (MQ=60)
ACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATG > SRR4302533.2185236/1‑94 (MQ=60)
ACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATG < SRR4302533.1520150/94‑1 (MQ=60)
ACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATG < SRR4302533.4449642/94‑1 (MQ=60)
ACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATG < SRR4302533.977963/94‑1 (MQ=60)
ACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATG < SRR4302533.5235377/94‑1 (MQ=60)
CTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGG > SRR4302533.1830147/1‑94 (MQ=60)
CTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGG > SRR4302533.1539578/1‑94 (MQ=60)
TTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGC > SRR4302533.5493944/1‑94 (MQ=60)
TGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCT > SRR4302533.729263/1‑94 (MQ=60)
GATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTA > SRR4302533.439693/1‑94 (MQ=60)
GATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTA > SRR4302533.3188033/1‑94 (MQ=60)
ATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAA > SRR4302533.611416/1‑94 (MQ=60)
ATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAA > SRR4302533.1338844/1‑94 (MQ=60)
ATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAA < SRR4302533.24625/94‑1 (MQ=60)
TTAACAGGAAAAAATAGGCTTAAAAATTCTTATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTCGCGAATCATGGCCTAAAA < SRR4302533.2309615/94‑1 (MQ=60)
TAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAA > SRR4302533.4918683/1‑94 (MQ=60)
AACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAA > SRR4302533.1366855/1‑94 (MQ=60)
ACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAAT < SRR4302533.2100587/94‑1 (MQ=60)
CAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATG < SRR4302533.693846/94‑1 (MQ=60)
CAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATG > SRR4302533.2029761/1‑94 (MQ=60)
CAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATG > SRR4302533.5028172/1‑94 (MQ=60)
AGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGT > SRR4302533.4546355/1‑94 (MQ=60)
GGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTC < SRR4302533.3389050/94‑1 (MQ=60)
AAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCC > SRR4302533.3615033/1‑94 (MQ=60)
AAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCC > SRR4302533.130852/1‑94 (MQ=60)
AAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCA < SRR4302533.2959924/94‑1 (MQ=60)
AAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAA > SRR4302533.1043866/1‑94 (MQ=60)
AAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAA < SRR4302533.4426521/94‑1 (MQ=60)
AAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAG < SRR4302533.1962478/94‑1 (MQ=60)
AAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAG > SRR4302533.2145338/1‑94 (MQ=60)
AAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAG > SRR4302533.6103903/1‑94 (MQ=60)
AAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAG < SRR4302533.2080186/94‑1 (MQ=60)
AATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGC < SRR4302533.466532/94‑1 (MQ=60)
ATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCC < SRR4302533.4411282/94‑1 (MQ=60)
ATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCC > SRR4302533.4914499/1‑94 (MQ=60)
TAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCA < SRR4302533.5114785/94‑1 (MQ=60)
TAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCA > SRR4302533.5269349/1‑94 (MQ=60)
AGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAG > SRR4302533.4487615/1‑94 (MQ=60)
AGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAG < SRR4302533.1930218/94‑1 (MQ=60)
AGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAG > SRR4302533.6114365/1‑94 (MQ=60)
GGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCCTGGCCTAAAAAATGTCCCAAGCCAGA > SRR4302533.4201594/1‑94 (MQ=60)
GGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGA > SRR4302533.2464220/1‑94 (MQ=60)
GCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAA < SRR4302533.5344991/94‑1 (MQ=60)
CTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAG > SRR4302533.203191/1‑94 (MQ=60)
CTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAG > SRR4302533.5154571/1‑94 (MQ=60)
CTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAG > SRR4302533.5095852/1‑94 (MQ=60)
CTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAG > SRR4302533.5691999/1‑94 (MQ=60)
CTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAG > SRR4302533.5095851/1‑94 (MQ=60)
CTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAG > SRR4302533.3368622/1‑94 (MQ=60)
CTTAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAG > SRR4302533.3327988/1‑94 (MQ=60)
TAAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGGAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCA > SRR4302533.3409469/1‑94 (MQ=60)
AAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCAT < SRR4302533.5487885/94‑1 (MQ=60)
AAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCAT < SRR4302533.4098320/94‑1 (MQ=60)
AAAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCAT < SRR4302533.6044438/94‑1 (MQ=60)
AAAAAGTCAGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCAT > SRR4302533.2745115/1‑94 (MQ=60)
AAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATA < SRR4302533.4976786/94‑1 (MQ=60)
AAAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATA < SRR4302533.625235/94‑1 (MQ=60)
AAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATAT > SRR4302533.2086836/1‑94 (MQ=60)
AAAGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATAT < SRR4302533.5945308/94‑1 (MQ=60)
AGTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTT > SRR4302533.933436/1‑94 (MQ=60)
GTCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTA > SRR4302533.613119/1‑94 (MQ=60)
TCTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGCCCCAAGCCAGAAGCATATTTTC < SRR4302533.5863988/94‑1 (MQ=60)
CTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACA > SRR4302533.4967098/1‑94 (MQ=60)
CTGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACA > SRR4302533.3891982/1‑94 (MQ=60)
TGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAA < SRR4302533.4889511/94‑1 (MQ=60)
TGATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAA > SRR4302533.972526/1‑94 (MQ=60)
GATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAG < SRR4302533.2054544/94‑1 (MQ=60)
GATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAG > SRR4302533.4570981/1‑94 (MQ=60)
GATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAG > SRR4302533.1362210/1‑94 (MQ=60)
ATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGG < SRR4302533.587421/94‑1 (MQ=60)
ATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGG < SRR4302533.99009/94‑1 (MQ=60)
ATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGG > SRR4302533.4797014/1‑94 (MQ=60)
ATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGG > SRR4302533.4437324/1‑94 (MQ=60)
ATGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGG < SRR4302533.3697421/94‑1 (MQ=60)
TGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGA < SRR4302533.3838185/94‑1 (MQ=60)
TGAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGA > SRR4302533.2121266/1‑94 (MQ=60)
GAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAA < SRR4302533.91304/94‑1 (MQ=60)
GAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAA < SRR4302533.2014372/94‑1 (MQ=60)
GAACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAA < SRR4302533.2014373/94‑1 (MQ=60)
AACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAG < SRR4302533.3591579/94‑1 (MQ=60)
AACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAG < SRR4302533.133082/94‑1 (MQ=60)
ACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGC < SRR4302533.3461501/94‑1 (MQ=60)
ACTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGC > SRR4302533.3053418/1‑94 (MQ=60)
ACTTCTAAAATGGGCAGGAAAAATCTTGC‑AACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCG < SRR4302533.5012383/94‑1 (MQ=60)
CTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCG > SRR4302533.2145790/1‑94 (MQ=60)
CTTCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCG < SRR4302533.3548414/94‑1 (MQ=60)
TCTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAA > SRR4302533.1897659/1‑94 (MQ=60)
CTTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAG < SRR4302533.837242/94‑1 (MQ=60)
TTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAATGAAGCGAAGA > SRR4302533.3354437/1‑94 (MQ=60)
TTAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGA > SRR4302533.1556216/1‑94 (MQ=60)
TAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGAC > SRR4302533.6283156/1‑94 (MQ=60)
TAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGAC > SRR4302533.2836562/1‑94 (MQ=60)
TAAATGGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGAC < SRR4302533.2137447/94‑1 (MQ=60)
GGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACA > SRR4302533.3045464/1‑94 (MQ=60)
GGGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACA < SRR4302533.920163/94‑1 (MQ=60)
GGCAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAA < SRR4302533.5283799/94‑1 (MQ=60)
CAGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGT > SRR4302533.1568882/1‑94 (MQ=60)
AGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTT > SRR4302533.4123163/1‑94 (MQ=60)
AGGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTT > SRR4302533.1647455/1‑94 (MQ=60)
|
GTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAACAACAGGTTGCGAATCATGGCCTAAAAAATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTT > NC_000913/1198169‑1198352
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
