Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,310,601 A→G L105P (CTG→CCG)  yciB ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,310,6010AG100.0% 606.9 / NA 189L105P (CTG→CCG) yciBhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (90/99);  total (90/99)

Only 100 of 198 total aligned reads displayed.

ATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCAGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCAT  >  NC_000913/1310511‑1310690
                                                                                          |                                                                                         
aTGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGc                                                                                         <  1:3138208/93‑1 (MQ=255)
 tGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCa                                                                                        >  2:3749317/1‑93 (MQ=255)
  gTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCAt                                                                                       <  1:4950223/93‑1 (MQ=255)
  gTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCAt                                                                                       <  1:4760650/93‑1 (MQ=255)
  gTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCAt                                                                                       >  2:1452741/1‑93 (MQ=255)
  gTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCAt                                                                                       >  2:4623314/1‑93 (MQ=255)
   tttGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATc                                                                                      <  1:1699904/93‑1 (MQ=255)
   tttGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATc                                                                                      <  2:2810914/93‑1 (MQ=255)
   tttGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTAAGATTCGACCATACCGGTTGCGGAAGCGTGAGTTCTTTAACCGGAATc                                                                                      >  2:1113765/1‑93 (MQ=255)
    ttGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATcc                                                                                     >  2:1557245/1‑93 (MQ=255)
         aGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGa                                                                                <  2:5739031/93‑1 (MQ=255)
          gACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGaa                                                                               >  1:1019544/1‑93 (MQ=255)
          gACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGaa                                                                               <  1:87426/93‑1 (MQ=255)
           aCCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAAt                                                                              <  2:1363836/93‑1 (MQ=255)
             cGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTa                                                                            <  1:1202147/93‑1 (MQ=255)
             cGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTa                                                                            <  2:6300747/93‑1 (MQ=255)
             cGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTa                                                                            >  1:1775903/1‑93 (MQ=255)
              gCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAg                                                                           >  2:5426097/1‑93 (MQ=255)
              gCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAg                                                                           <  1:4143032/93‑1 (MQ=255)
               cAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGc                                                                          >  1:2178336/1‑93 (MQ=255)
               cAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGc                                                                          <  1:731879/93‑1 (MQ=255)
                aaaGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCg                                                                         <  1:2205946/93‑1 (MQ=255)
                    gATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCtt                                                                     <  1:1014152/93‑1 (MQ=255)
                     aTAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCttt                                                                    <  1:1453877/93‑1 (MQ=255)
                      tAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCtttt                                                                   >  2:2201599/1‑93 (MQ=255)
                       aaaGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCttttt                                                                  <  2:2329452/93‑1 (MQ=255)
                        aaGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTtc                                                                 >  1:5723296/1‑93 (MQ=255)
                         aGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTtca                                                                <  1:3695081/93‑1 (MQ=255)
                          gAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTtcat                                                               >  1:3883606/1‑93 (MQ=255)
                            aaaCAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTtcatca                                                             <  1:3635392/93‑1 (MQ=255)
                            aaaCAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTtcatca                                                             <  2:5077962/93‑1 (MQ=255)
                            aaaCAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTtcatca                                                             >  1:274742/1‑93 (MQ=255)
                            aaaCAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTtcatca                                                             >  2:4180959/1‑93 (MQ=255)
                               cAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCAccc                                                          >  1:4291092/1‑93 (MQ=255)
                                  cccAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGGTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCAtt                                                       >  1:5342740/1‑93 (MQ=255)
                                   ccAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGCATTAGCGGCTTTTTCATCACCCAGTg                                                      >  1:1953699/1‑93 (MQ=255)
                                    cAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTgg                                                     >  2:3270897/1‑93 (MQ=255)
                                    cAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTgg                                                     >  2:4761096/1‑93 (MQ=255)
                                    cAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTgg                                                     >  1:5973956/1‑93 (MQ=255)
                                    cAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTgg                                                     >  1:5282082/1‑93 (MQ=255)
                                     aGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGc                                                    <  2:940924/93‑1 (MQ=255)
                                      ggCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCt                                                   >  2:4665041/1‑93 (MQ=255)
                                      ggCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCt                                                   <  1:646419/93‑1 (MQ=255)
                                        ccAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTATTCATCACCCATTGGCTGa                                                 <  2:6118256/93‑1 (MQ=255)
                                         cAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGAc                                                >  1:4428161/1‑93 (MQ=255)
                                          aGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACt                                               >  2:3116027/1‑93 (MQ=255)
                                          aGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACt                                               >  2:5258094/1‑93 (MQ=255)
                                          aGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACt                                               >  1:6195887/1‑93 (MQ=255)
                                           gATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTa                                              >  1:5177277/1‑93 (MQ=255)
                                           gATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTa                                              >  1:486992/1‑93 (MQ=255)
                                           gATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTa                                              >  1:4885888/1‑93 (MQ=255)
                                            aTTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTaa                                             <  1:3552357/93‑1 (MQ=255)
                                            aTTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTaa                                             <  2:302604/93‑1 (MQ=255)
                                             ttCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAAc                                            >  2:5807723/1‑93 (MQ=255)
                                             ttCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAAc                                            >  1:1266087/1‑93 (MQ=255)
                                                aGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAgg                                         <  2:119763/93‑1 (MQ=255)
                                                 gCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAggg                                        >  2:4702162/1‑93 (MQ=255)
                                                     cGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTcc                                    <  1:694544/93‑1 (MQ=255)
                                                     cGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATACGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTcc                                    >  1:3381194/1‑93 (MQ=255)
                                                      gACCATACCGGATGCGGCAGCGTGAGTTCTTTACACGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTTGCTGACTAACAGGGCTacc                                   >  1:3226162/1‑93 (MQ=255)
                                                       aCCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCg                                  >  1:2453674/1‑93 (MQ=255)
                                                        ccATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGc                                 >  1:1401066/1‑93 (MQ=255)
                                                         cATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCa                                <  2:4043954/93‑1 (MQ=255)
                                                          aTACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCaa                               <  1:1904259/93‑1 (MQ=255)
                                                          aTACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCaa                               >  1:110657/1‑93 (MQ=255)
                                                          aTACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCaa                               >  2:2359744/1‑93 (MQ=255)
                                                           tACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCaaa                              >  2:5860566/1‑93 (MQ=255)
                                                           tACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCaaa                              >  2:5693719/1‑93 (MQ=255)
                                                           tACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCaaa                              <  1:3033281/93‑1 (MQ=255)
                                                           tACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCaaa                              >  1:1888598/1‑93 (MQ=255)
                                                             ccGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATa                            >  1:6044693/1‑93 (MQ=255)
                                                             ccGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATa                            <  2:3454385/93‑1 (MQ=255)
                                                             ccGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATa                            <  1:2827847/93‑1 (MQ=255)
                                                              cGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATag                           >  1:5559981/1‑93 (MQ=255)
                                                              cGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATag                           <  1:2120486/93‑1 (MQ=255)
                                                               ggTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATaga                          <  2:4431934/93‑1 (MQ=255)
                                                                gtcgCGGCAGCGTGAGTTCTTTACTCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATcgag                         <  2:2662291/90‑1 (MQ=255)
                                                                gTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATagag                         <  1:1583645/93‑1 (MQ=255)
                                                                 ttGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGc                        >  1:506357/1‑93 (MQ=255)
                                                                    cGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATa                     <  2:1549351/93‑1 (MQ=255)
                                                                    cGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATa                     >  2:2071282/1‑93 (MQ=255)
                                                                      gCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATaaa                   <  2:4895948/93‑1 (MQ=255)
                                                                       cAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAAt                  >  2:3639886/1‑93 (MQ=255)
                                                                        aGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATg                 <  1:4842463/93‑1 (MQ=255)
                                                                         gCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGa                >  2:4959505/1‑93 (MQ=255)
                                                                           gTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACa              <  2:4166696/93‑1 (MQ=255)
                                                                            tGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAg             >  2:2509405/1‑93 (MQ=255)
                                                                             gAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAga            >  1:4541601/1‑92 (MQ=255)
                                                                              aGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTa           <  2:2139188/93‑1 (MQ=255)
                                                                              aGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTa           <  1:4469296/93‑1 (MQ=255)
                                                                               gTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTaa          >  2:2413040/1‑93 (MQ=255)
                                                                               gTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTaa          <  1:3770521/93‑1 (MQ=255)
                                                                                ttCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAAc         <  1:676640/93‑1 (MQ=255)
                                                                                ttCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAAc         >  2:682557/1‑93 (MQ=255)
                                                                                   tttACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCtt      <  2:3324830/93‑1 (MQ=255)
                                                                                   tttACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCtt      >  2:3886171/1‑93 (MQ=255)
                                                                                    ttACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTc     <  2:3352340/93‑1 (MQ=255)
                                                                                      aCCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCa   <  2:1339460/93‑1 (MQ=255)
                                                                                      aCCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCa   >  1:5419860/1‑93 (MQ=255)
                                                                                       cccGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGGAACCTTCCAt  >  1:4231361/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCAGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCAT  >  NC_000913/1310511‑1310690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCAGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCATTTAA  >  NC_000913/1310508‑1310694
                                                                                             |                                                                                             
TAGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATCCCGGTTGCGGCAGCGTGAGTTCTTTACCCG                                                                                               <  SRR4302533.203865/94‑1 (MQ=60)
 AGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGG                                                                                              <  SRR4302533.2689348/94‑1 (MQ=60)
 AGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGG                                                                                              >  SRR4302533.5810545/1‑94 (MQ=60)
 AGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGG                                                                                              <  SRR4302533.2941052/94‑1 (MQ=60)
 AGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGG                                                                                              >  SRR4302533.5462083/1‑94 (MQ=60)
 AGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTGCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTCCCCGG                                                                                              <  SRR4302533.4949837/94‑1 (MQ=60)
   ATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCA                                                                                            <  SRR4302533.3157501/94‑1 (MQ=60)
    TGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCAT                                                                                           <  SRR4302533.6252793/94‑1 (MQ=60)
     GTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATC                                                                                          <  SRR4302533.5012146/94‑1 (MQ=60)
     GTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATC                                                                                          <  SRR4302533.4980204/94‑1 (MQ=60)
     GTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATC                                                                                          <  SRR4302533.4789532/94‑1 (MQ=60)
      TTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCC                                                                                         <  SRR4302533.1710206/94‑1 (MQ=60)
       TTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCG                                                                                        <  SRR4302533.4911211/94‑1 (MQ=60)
         GCCAGACCGCAAAGGAGAAAGAAAACATCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCT                                                                                      <  SRR4302533.4876429/94‑1 (MQ=60)
          CCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTG                                                                                     >  SRR4302533.117264/1‑94 (MQ=60)
           CAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGA                                                                                    >  SRR4302533.5576620/1‑94 (MQ=60)
            AGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAA                                                                                   >  SRR4302533.1025536/1‑94 (MQ=60)
             GACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAAT                                                                                  <  SRR4302533.87985/94‑1 (MQ=60)
             GACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACACGGCATCCGCTGAAT                                                                                  >  SRR4302533.1752400/1‑94 (MQ=60)
              ACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATT                                                                                 <  SRR4302533.35043/94‑1 (MQ=60)
               CCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTA                                                                                >  SRR4302533.1786715/1‑94 (MQ=60)
                CGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAG                                                                               <  SRR4302533.1209370/94‑1 (MQ=60)
                CGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAG                                                                               <  SRR4302533.4526299/94‑1 (MQ=60)
                 GCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTATCCGGCATCCGCTGAATTAGC                                                                              >  SRR4302533.2492652/1‑94 (MQ=60)
                 GCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGC                                                                              >  SRR4302533.178937/1‑94 (MQ=60)
                 GCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGC                                                                              >  SRR4302533.1443855/1‑94 (MQ=60)
                 GCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGC                                                                              <  SRR4302533.4168150/94‑1 (MQ=60)
                 GCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGC                                                                              >  SRR4302533.2191764/1‑94 (MQ=60)
                  CAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCG                                                                             <  SRR4302533.736187/94‑1 (MQ=60)
                   AAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGG                                                                            <  SRR4302533.2219550/94‑1 (MQ=60)
                   AAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGG                                                                            <  SRR4302533.12479/94‑1 (MQ=60)
                    AAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGC                                                                           >  SRR4302533.712232/1‑94 (MQ=60)
                    AAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGC                                                                           <  SRR4302533.4240995/94‑1 (MQ=60)
                     AGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCT                                                                          <  SRR4302533.5401181/94‑1 (MQ=60)
                     AGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCT                                                                          <  SRR4302533.2420199/94‑1 (MQ=60)
                       GATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTT                                                                        <  SRR4302533.1020091/94‑1 (MQ=60)
                        ATAAAGAAAACAGCCCAGGCCAGATTCGGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTT                                                                       >  SRR4302533.4412898/1‑94 (MQ=60)
                        ATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGCATTAGCGGCTTTT                                                                       >  SRR4302533.1692887/1‑94 (MQ=60)
                        ATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTT                                                                       <  SRR4302533.1462645/94‑1 (MQ=60)
                          AAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTC                                                                     >  SRR4302533.5757849/1‑94 (MQ=60)
                            AGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCAT                                                                   >  SRR4302533.3907303/1‑94 (MQ=60)
                            AGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCAT                                                                   <  SRR4302533.6053030/94‑1 (MQ=60)
                            AGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCAT                                                                   <  SRR4302533.3717777/94‑1 (MQ=60)
                              AAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCA                                                                 >  SRR4302533.276413/1‑94 (MQ=60)
                               AAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCAC                                                                >  SRR4302533.3733405/1‑94 (MQ=60)
                               AAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCAC                                                                <  SRR4302533.3657746/94‑1 (MQ=60)
                                 ACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCC                                                              >  SRR4302533.4316898/1‑94 (MQ=60)
                                   AGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCAT                                                            <  SRR4302533.3229243/94‑1 (MQ=60)
                                   AGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCGTTTTCATCACCCAT                                                            >  SRR4302533.3275686/1‑94 (MQ=60)
                                    GCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTATTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATT                                                           >  SRR4302533.5374778/1‑94 (MQ=60)
                                    GCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGGTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATT                                                           >  SRR4302533.5374779/1‑94 (MQ=60)
                                     CCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGCATTAGCGGCTTTTTCATCACCCAGTG                                                          >  SRR4302533.1965605/1‑94 (MQ=60)
                                     CCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTG                                                          >  SRR4302533.5098214/1‑94 (MQ=60)
                                     CCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTG                                                          <  SRR4302533.854811/94‑1 (MQ=60)
                                      CCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGG                                                         >  SRR4302533.5313729/1‑94 (MQ=60)
                                      CCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGG                                                         <  SRR4302533.1047950/94‑1 (MQ=60)
                                      CCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGG                                                         >  SRR4302533.6010118/1‑94 (MQ=60)
                                      CCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGG                                                         >  SRR4302533.5821501/1‑94 (MQ=60)
                                         GGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTG                                                      <  SRR4302533.650227/94‑1 (MQ=60)
                                          GCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGA                                                     >  SRR4302533.2152373/1‑94 (MQ=60)
                                          GCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGA                                                     >  SRR4302533.5752503/1‑94 (MQ=60)
                                           CCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGAC                                                    >  SRR4302533.4454929/1‑94 (MQ=60)
                                            CAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACT                                                   >  SRR4302533.6233060/1‑94 (MQ=60)
                                             AGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTA                                                  >  SRR4302533.5208545/1‑94 (MQ=60)
                                             AGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTA                                                  >  SRR4302533.4915488/1‑94 (MQ=60)
                                             AGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTA                                                  >  SRR4302533.489907/1‑94 (MQ=60)
                                               ATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAAC                                                <  SRR4302533.3574237/94‑1 (MQ=60)
                                               ATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAAC                                                >  SRR4302533.1273664/1‑94 (MQ=60)
                                                 TCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAG                                              <  SRR4302533.4311748/94‑1 (MQ=60)
                                                  CAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGG                                             <  SRR4302533.1561002/94‑1 (MQ=60)
                                                     CTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGAGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCT                                          >  SRR4302533.1901858/1‑94 (MQ=60)
                                                      TTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTC                                         <  SRR4302533.2994662/94‑1 (MQ=60)
                                                       TCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATACGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCC                                        >  SRR4302533.3402064/1‑94 (MQ=60)
                                                        CGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCC                                       <  SRR4302533.698650/94‑1 (MQ=60)
                                                        CGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCC                                       <  SRR4302533.1357047/94‑1 (MQ=60)
                                                        CGACCATACCGGATGCGGCAGCGTGAGTTCTTTACACGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTTGCTGACTAACAGGGCTACC                                       >  SRR4302533.3246054/1‑94 (MQ=60)
                                                         GACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCG                                      >  SRR4302533.2468815/1‑94 (MQ=60)
                                                         GACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCG                                      <  SRR4302533.196840/94‑1 (MQ=60)
                                                          ACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGC                                     >  SRR4302533.1409513/1‑94 (MQ=60)
                                                            CATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAA                                   >  SRR4302533.111359/1‑94 (MQ=60)
                                                             ATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAA                                  >  SRR4302533.2218454/1‑94 (MQ=60)
                                                             ATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAA                                  <  SRR4302533.1915879/94‑1 (MQ=60)
                                                             ATACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAA                                  >  SRR4302533.1900136/1‑94 (MQ=60)
                                                              TACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAAT                                 <  SRR4302533.3051838/94‑1 (MQ=60)
                                                               ACCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATA                                >  SRR4302533.6081311/1‑94 (MQ=60)
                                                                CCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAG                               <  SRR4302533.3923517/94‑1 (MQ=60)
                                                                CCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAG                               <  SRR4302533.2845247/94‑1 (MQ=60)
                                                                CCGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAG                               >  SRR4302533.5593584/1‑94 (MQ=60)
                                                                 CGGTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGA                              <  SRR4302533.2133561/94‑1 (MQ=60)
                                                                   GTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGC                            >  SRR4302533.509362/1‑94 (MQ=60)
                                                                   GTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGC                            <  SRR4302533.1593189/94‑1 (MQ=60)
                                                                   GTTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGC                            <  SRR4302533.5217209/94‑1 (MQ=60)
                                                                    TTGCGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCA                           <  SRR4302533.3840273/94‑1 (MQ=60)
                                                                       CGGCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAA                        <  SRR4302533.4466604/94‑1 (MQ=60)
                                                                         GCAGCGTGAGTTCTTTACCCGGCATCCGCTGACTTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGCGCTCCCGCAAATAGAGCATAAAT                      <  SRR4302533.1962950/94‑1 (MQ=60)
                                                                         GCAGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAAT                      <  SRR4302533.666546/94‑1 (MQ=60)
                                                                           AGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGA                    <  SRR4302533.4871812/94‑1 (MQ=60)
                                                                           AGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGA                    >  SRR4302533.4841901/1‑94 (MQ=60)
                                                                           AGCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGA                    >  SRR4302533.468536/1‑94 (MQ=60)
                                                                            GCGTGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGAC                   <  SRR4302533.6091489/94‑1 (MQ=60)
                                                                               TGAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGA                >  SRR4302533.4569104/1‑94 (MQ=60)
                                                                                GAGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTA               <  SRR4302533.2829091/94‑1 (MQ=60)
                                                                                 AGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAA              <  SRR4302533.3608361/94‑1 (MQ=60)
                                                                                 AGTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAA              <  SRR4302533.4496327/94‑1 (MQ=60)
                                                                                  GTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAAC             >  SRR4302533.4953755/1‑94 (MQ=60)
                                                                                  GTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAAC             <  SRR4302533.3793639/94‑1 (MQ=60)
                                                                                  GTTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAAC             >  SRR4302533.3684719/1‑94 (MQ=60)
                                                                                   TTCTTTACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACC            <  SRR4302533.680639/94‑1 (MQ=60)
                                                                                        TACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCA       >  SRR4302533.5452469/1‑94 (MQ=60)
                                                                                         ACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCAT      <  SRR4302533.3153408/94‑1 (MQ=60)
                                                                                         ACCCGGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGGAACCTTCCAT      >  SRR4302533.4256937/1‑94 (MQ=60)
                                                                                             GGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCATTTAA  >  SRR4302533.2827324/1‑94 (MQ=60)
                                                                                             |                                                                                             
TAGATGTTTGCCAGACCGCAAAGGATAAAGAAAACAGCCCAGGCCAGATTCAGCTTCGACCATACCGGTTGCGGCAGCGTGAGTTCTTTACCCAGCATCCGCTGAATTAGCGGCTTTTTCATCACCCATTGGCTGACTAACAGGGCTCCCGCAAATAGAGCATAAATGACAGTAACCTTCCATTTAA  >  NC_000913/1310508‑1310694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑