Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,740,008	T→C	V191A (GTA→GCA)	cfa →	cyclopropane fatty acyl phospholipid synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,740,008	0	T	C	100.0%	695.2 / NA	218	V191A (GTA→GCA)	cfa	cyclopropane fatty acyl phospholipid synthase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (108/110); total (108/110)

Only 100 of 222 total aligned reads displayed.

AAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGTAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAG  >  NC_000913/1739918‑1740097

aaaaaTTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCaa                                                                                         <  1:4888789/93‑1 (MQ=255)

aaaaaTTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCaa                                                                                         <  1:4389621/93‑1 (MQ=255)

     ttGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCgtg                                                                                    >  1:3070925/1‑93 (MQ=255)

     ttGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCgtg                                                                                    >  1:964270/1‑93 (MQ=255)

       gCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCgtggt                                                                                  <  2:664211/93‑1 (MQ=255)

       gCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCgtggg                                                                                  >  2:2882984/1‑92 (MQ=255)

       gCAGTTAAAACCAGGGATGCGCGTACCGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCgtggt                                                                                  >  2:5973010/1‑93 (MQ=255)

        cAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCgtggtg                                                                                 <  1:4693717/93‑1 (MQ=255)

          gTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTggg                                                                               >  1:1804330/1‑93 (MQ=255)

           ttAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTgggg                                                                              >  1:934515/1‑92 (MQ=255)

           ttAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTgggg                                                                              >  1:3457330/1‑92 (MQ=255)

           ttAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGc                                                                              >  1:2021966/1‑93 (MQ=255)

              aaaCCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGTGTc                                                                           >  1:892965/1‑93 (MQ=255)

                 ccAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCCCACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCAcc                                                                        >  2:4987525/1‑93 (MQ=255)

                 ccAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCAcc                                                                        >  2:6279638/1‑93 (MQ=255)

                 ccAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCAcc                                                                        <  1:2634710/93‑1 (MQ=255)

                 ccAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCAcc                                                                        >  1:2820979/1‑93 (MQ=255)

                  cAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCa                                                                       >  1:1124997/1‑93 (MQ=255)

                   aGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCAt                                                                      <  1:2478273/93‑1 (MQ=255)

                   aGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCAt                                                                      >  2:2293489/1‑93 (MQ=255)

                   aGGGACGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCAt                                                                      >  2:2384385/1‑93 (MQ=255)

                    gggATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATTGCATCTAATTATGACGCAAGCGTGGTGGGGGGCACCAtt                                                                     >  2:2431569/1‑93 (MQ=255)

                     ggATGCGCGTACTGGATATTGGCTGCGGCTGGTGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCAttt                                                                    <  1:1966784/93‑1 (MQ=255)

                     ggATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCAttt                                                                    >  2:1980375/1‑93 (MQ=255)

                      gATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTc                                                                   <  1:4056823/93‑1 (MQ=255)

                       aTGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCt                                                                  <  2:1146086/93‑1 (MQ=255)

                             gTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGaa                                                            >  2:1793516/1‑93 (MQ=255)

                              tACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAAc                                                           >  1:3206873/1‑93 (MQ=255)

                               aCTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACa                                                          >  2:1744929/1‑93 (MQ=255)

                               aCTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACa                                                          <  1:2069360/93‑1 (MQ=255)

                               aCTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACa                                                          <  1:4785945/93‑1 (MQ=255)

                                cTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAg                                                         >  2:104315/1‑93 (MQ=255)

                                cTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAg                                                         >  2:4070387/1‑93 (MQ=255)

                                   gATATTGGCTGCGGCTGGGGCTGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaa                                                      >  2:4487456/1‑93 (MQ=255)

                                   gATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaa                                                      >  2:1843182/1‑93 (MQ=255)

                                     tatTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaa                                                    >  1:2250823/1‑93 (MQ=255)

                                     tatTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaa                                                    <  1:1532835/93‑1 (MQ=255)

                                     tatTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaa                                                    >  1:2684058/1‑93 (MQ=255)

                                      atTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaaa                                                   <  1:5517520/93‑1 (MQ=255)

                                      atTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaaa                                                   <  1:5923536/93‑1 (MQ=255)

                                      atTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaaa                                                   >  1:4171367/1‑93 (MQ=255)

                                       ttGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaaaa                                                  >  1:220986/1‑93 (MQ=255)

                                       ttGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCaaaaaa                                                  >  1:5274380/1‑93 (MQ=255)

                                          gCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATgg                                               <  1:400650/93‑1 (MQ=255)

                                           cTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCCCCATTTCTGCCGAACAGCAAAAAATGGc                                              <  2:4852239/93‑1 (MQ=255)

                                            tGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCt                                             <  2:2645466/93‑1 (MQ=255)

                                            tGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCt                                             >  1:5733067/1‑93 (MQ=255)

                                              cGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCa                                           <  2:4700323/93‑1 (MQ=255)

                                              cGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCa                                           <  1:3792623/93‑1 (MQ=255)

                                               ggCTGGGGCTGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAg                                          <  2:4620976/93‑1 (MQ=255)

                                                gCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAgg                                         >  2:2505602/1‑93 (MQ=255)

                                                gCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAgg                                         >  2:4921401/1‑93 (MQ=255)

                                                gCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAgg                                         <  2:4039068/93‑1 (MQ=255)

                                                gCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAgg                                         >  2:866335/1‑93 (MQ=255)

                                                gCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAgg                                         <  1:2079371/93‑1 (MQ=255)

                                                gCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAgg                                         <  1:5547176/93‑1 (MQ=255)

                                                  tGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGaa                                       >  1:5080827/1‑93 (MQ=255)

                                                  tGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAAGGGCTCAGGaa                                       <  2:5297776/93‑1 (MQ=255)

                                                   ggggCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAAc                                      >  1:5459417/1‑93 (MQ=255)

                                                   ggggCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAAc                                      <  2:351956/93‑1 (MQ=255)

                                                       cGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCtg                                  <  1:3502197/93‑1 (MQ=255)

                                                        ggACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCtgc                                 >  2:5822889/1‑92 (MQ=255)

                                                           cTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGaa                              <  2:3636178/93‑1 (MQ=255)

                                                            tGGCACACTACATGGCATCTAATTTTGACGCAAGCGTGGTGGGCGTCACCATTTCTTCCGAACAGCAAAAAATGGGTCAGGAACGCTGTGAAg                             >  2:1525190/1‑93 (MQ=255)

                                                            tGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAg                             <  1:2140735/93‑1 (MQ=255)

                                                              gCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGc                           <  2:3887759/93‑1 (MQ=255)

                                                               cacaCTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACTCTGTGAAGGcc                          <  1:446652/93‑1 (MQ=255)

                                                               cacaCTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGcc                          <  2:4740530/93‑1 (MQ=255)

                                                               cacaCTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGcc                          <  1:223353/93‑1 (MQ=255)

                                                               cacaCTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGcc                          <  2:5890538/93‑1 (MQ=255)

                                                                acacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCACAAAATGGCTCAGGAACGCTGTGAAGGCCt                         >  1:774627/1‑93 (MQ=255)

                                                                acacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCt                         <  1:223022/93‑1 (MQ=255)

                                                                acacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCt                         >  2:1618685/1‑93 (MQ=255)

                                                                acacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCt                         <  2:1609141/93‑1 (MQ=255)

                                                                acacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCt                         >  2:4358580/1‑93 (MQ=255)

                                                                 cacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTg                        <  1:4579255/93‑1 (MQ=255)

                                                                 cacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTg                        <  2:5022741/93‑1 (MQ=255)

                                                                 cacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTg                        >  2:2128836/1‑93 (MQ=255)

                                                                 cacTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTg                        >  2:5936321/1‑93 (MQ=255)

                                                                  acTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGGCTgg                       >  2:3382149/1‑93 (MQ=255)

                                                                  acTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTgg                       <  1:3090799/93‑1 (MQ=255)

                                                                   cTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGa                      <  2:5155516/93‑1 (MQ=255)

                                                                   cTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGa                      <  1:2901960/93‑1 (MQ=255)

                                                                    tACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGAt                     >  1:696134/1‑93 (MQ=255)

                                                                      cATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGt                   <  1:103810/93‑1 (MQ=255)

                                                                       aTGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTc                  >  1:3642778/1‑93 (MQ=255)

                                                                        tGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCa                 >  1:4544072/1‑93 (MQ=255)

                                                                             tCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCAtt            >  1:4020882/1‑93 (MQ=255)

                                                                              cTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCAttt           >  2:773928/1‑93 (MQ=255)

                                                                               tAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCAtttt          <  2:3867126/93‑1 (MQ=255)

                                                                               tAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCAtttt          <  2:3090563/93‑1 (MQ=255)

                                                                               tAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCAtttt          >  1:1782012/1‑93 (MQ=255)

                                                                                  ttATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTtgct       >  2:544174/1‑93 (MQ=255)

                                                                                  ttATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTtgct       >  1:5780409/1‑93 (MQ=255)

                                                                                     tGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCa    >  2:2768899/1‑93 (MQ=255)

                                                                                      gACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCaa   >  1:2998630/1‑93 (MQ=255)

                                                                                      gACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCaa   <  1:517732/93‑1 (MQ=255)

                                                                                      gACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCaa   <  1:6273487/93‑1 (MQ=255)

                                                                                       aCGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAg  >  1:3730046/1‑93 (MQ=255)

                                                                                       aCGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAg  <  1:5415355/93‑1 (MQ=255)

AAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGTAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAG  >  NC_000913/1739918‑1740097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGAAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGTAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGATTA  >  NC_000913/1739915‑1740101

GTGAAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGC                                                                                               >  SRR4302533.5470093/1‑94 (MQ=60)

  GAAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAA                                                                                             <  SRR4302533.968802/94‑1 (MQ=60)

  GAAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAA                                                                                             >  SRR4302533.3280402/1‑94 (MQ=60)

   AAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAG                                                                                            <  SRR4302533.3102043/94‑1 (MQ=60)

   AAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAG                                                                                            <  SRR4302533.4416124/94‑1 (MQ=60)

   AAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAG                                                                                            <  SRR4302533.4918411/94‑1 (MQ=60)

    AAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGC                                                                                           >  SRR4302533.6235947/1‑94 (MQ=60)

      AATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGT                                                                                         <  SRR4302533.3074829/94‑1 (MQ=60)

       ATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTG                                                                                        >  SRR4302533.969932/1‑94 (MQ=60)

       ATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTG                                                                                        >  SRR4302533.3089779/1‑94 (MQ=60)

        TTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGG                                                                                       <  SRR4302533.5480657/94‑1 (MQ=60)

           CAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGG                                                                                    <  SRR4302533.4722161/94‑1 (MQ=60)

           CAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGG                                                                                    <  SRR4302533.204430/94‑1 (MQ=60)

            AGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGG                                                                                   >  SRR4302533.4861476/1‑94 (MQ=60)

            AGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGG                                                                                   >  SRR4302533.1815313/1‑94 (MQ=60)

            AGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGG                                                                                   >  SRR4302533.2428748/1‑94 (MQ=60)

             GTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGG                                                                                  >  SRR4302533.3478676/1‑94 (MQ=60)

             GTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGG                                                                                  >  SRR4302533.940004/1‑94 (MQ=60)

             GTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGC                                                                                  >  SRR4302533.2034420/1‑94 (MQ=60)

             GTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGC                                                                                  >  SRR4302533.1048655/1‑94 (MQ=60)

                AAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGTGTC                                                                               >  SRR4302533.898213/1‑94 (MQ=60)

                 AAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCA                                                                              <  SRR4302533.2246475/94‑1 (MQ=60)

                  AACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCAC                                                                             >  SRR4302533.2247727/1‑94 (MQ=60)

                   ACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACC                                                                            >  SRR4302533.2838338/1‑94 (MQ=60)

                    CCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCA                                                                           >  SRR4302533.962242/1‑94 (MQ=60)

                    CCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCA                                                                           >  SRR4302533.1131672/1‑94 (MQ=60)

                    CCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCA                                                                           <  SRR4302533.2650901/94‑1 (MQ=60)

                     CAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCAT                                                                          <  SRR4302533.3818874/94‑1 (MQ=60)

                     CAGGGATGCGCGTACTGGATATTAGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCAT                                                                          >  SRR4302533.4198586/1‑94 (MQ=60)

                      AGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCCTT                                                                         >  SRR4302533.5601223/1‑94 (MQ=60)

                      AGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATT                                                                         >  SRR4302533.4339002/1‑94 (MQ=60)

                      AGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATT                                                                         <  SRR4302533.2493557/94‑1 (MQ=60)

                      AGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATT                                                                         <  SRR4302533.2156579/94‑1 (MQ=60)

                        GGATGCGCGTACTGGATATTGGCTGCGGCTGGTGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTC                                                                       <  SRR4302533.1978804/94‑1 (MQ=60)

                         GATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCT                                                                      <  SRR4302533.4081519/94‑1 (MQ=60)

                         GATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCT                                                                      <  SRR4302533.4705394/94‑1 (MQ=60)

                               CGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAA                                                                >  SRR4302533.6335120/1‑94 (MQ=60)

                               CGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACCACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAA                                                                >  SRR4302533.4580165/1‑94 (MQ=60)

                                GTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAAC                                                               >  SRR4302533.1943651/1‑94 (MQ=60)

                                GTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAAC                                                               >  SRR4302533.4729308/1‑94 (MQ=60)

                                GTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAAC                                                               >  SRR4302533.2349861/1‑94 (MQ=60)

                                GTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAAC                                                               >  SRR4302533.3226620/1‑94 (MQ=60)

                                  ACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAG                                                             <  SRR4302533.4814931/94‑1 (MQ=60)

                                  ACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAG                                                             <  SRR4302533.2082105/94‑1 (MQ=60)

                                    TGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACCGCA                                                           >  SRR4302533.4491126/1‑94 (MQ=60)

                                    TGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCA                                                           <  SRR4302533.5797254/94‑1 (MQ=60)

                                      GATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAA                                                         <  SRR4302533.2240064/94‑1 (MQ=60)

                                      GATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAA                                                         >  SRR4302533.3488035/1‑94 (MQ=60)

                                       ATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAA                                                        >  SRR4302533.33794/1‑94 (MQ=60)

                                       ATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAA                                                        >  SRR4302533.2264736/1‑94 (MQ=60)

                                       ATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAA                                                        >  SRR4302533.2700506/1‑94 (MQ=60)

                                       ATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAA                                                        >  SRR4302533.1748801/1‑94 (MQ=60)

                                        TATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAA                                                       <  SRR4302533.1542042/94‑1 (MQ=60)

                                        TATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAA                                                       >  SRR4302533.4196645/1‑94 (MQ=60)

                                         ATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAA                                                      >  SRR4302533.5306002/1‑94 (MQ=60)

                                         ATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAA                                                      <  SRR4302533.5550834/94‑1 (MQ=60)

                                         ATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAA                                                      >  SRR4302533.3219809/1‑94 (MQ=60)

                                         ATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAA                                                      <  SRR4302533.5959342/94‑1 (MQ=60)

                                         ATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAA                                                      >  SRR4302533.222371/1‑94 (MQ=60)

                                            GGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGG                                                   >  SRR4302533.4497844/1‑94 (MQ=60)

                                             GCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGC                                                  <  SRR4302533.403067/94‑1 (MQ=60)

                                              CTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCT                                                 >  SRR4302533.5767679/1‑94 (MQ=60)

                                              CTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCT                                                 <  SRR4302533.2907306/94‑1 (MQ=60)

                                                 CGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAG                                              <  SRR4302533.3815839/94‑1 (MQ=60)

                                                  GGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGA                                             >  SRR4302533.2593998/1‑94 (MQ=60)

                                                   GCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGA                                            <  SRR4302533.5580678/94‑1 (MQ=60)

                                                   GCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGA                                            <  SRR4302533.2092165/94‑1 (MQ=60)

                                                    CTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAA                                           >  SRR4302533.5111533/1‑94 (MQ=60)

                                                     TGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAAC                                          >  SRR4302533.5492309/1‑94 (MQ=60)

                                                     TGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAAC                                          >  SRR4302533.2974017/1‑94 (MQ=60)

                                                          CGGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGT                                     <  SRR4302533.3523792/94‑1 (MQ=60)

                                                           GGACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTG                                    <  SRR4302533.2215667/94‑1 (MQ=60)

                                                             ACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAA                                  <  SRR4302533.1862424/94‑1 (MQ=60)

                                                             ACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAA                                  >  SRR4302533.3788950/1‑94 (MQ=60)

                                                             ACTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAA                                  <  SRR4302533.3694350/94‑1 (MQ=60)

                                                              CTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAG                                 >  SRR4302533.3878069/1‑94 (MQ=60)

                                                              CTGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAG                                 >  SRR4302533.100071/1‑94 (MQ=60)

                                                               TGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGG                                <  SRR4302533.2153929/94‑1 (MQ=60)

                                                               TGGCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGG                                >  SRR4302533.3543679/1‑94 (MQ=60)

                                                                 GCACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCGTTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCC                              <  SRR4302533.4957915/94‑1 (MQ=60)

                                                                  CACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCACAAAATGGCTCAGGAACGCTGTGAAGGCCT                             >  SRR4302533.779181/1‑94 (MQ=60)

                                                                  CACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACTCTGTGAAGGCCT                             <  SRR4302533.449326/94‑1 (MQ=60)

                                                                  CACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCT                             <  SRR4302533.224745/94‑1 (MQ=60)

                                                                  CACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCT                             <  SRR4302533.5860571/94‑1 (MQ=60)

                                                                  CACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCT                             <  SRR4302533.4807732/94‑1 (MQ=60)

                                                                  CACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCT                             >  SRR4302533.858022/1‑94 (MQ=60)

                                                                  CACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCT                             <  SRR4302533.5573700/94‑1 (MQ=60)

                                                                   ACACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTG                            <  SRR4302533.224414/94‑1 (MQ=60)

                                                                    CACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGG                           <  SRR4302533.4607009/94‑1 (MQ=60)

                                                                    CACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGG                           >  SRR4302533.92526/1‑94 (MQ=60)

                                                                    CACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGG                           <  SRR4302533.2150430/94‑1 (MQ=60)

                                                                     ACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGA                          <  SRR4302533.3109803/94‑1 (MQ=60)

                                                                     ACTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGA                          <  SRR4302533.1330499/94‑1 (MQ=60)

                                                                      CTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGAT                         <  SRR4302533.2919787/94‑1 (MQ=60)

                                                                      CTACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGAT                         >  SRR4302533.700252/1‑94 (MQ=60)

                                                                       TACATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATG                        <  SRR4302533.4033855/94‑1 (MQ=60)

                                                                        ACATGTCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGT                       <  SRR4302533.527628/94‑1 (MQ=60)

                                                                         CATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTC                      >  SRR4302533.5651848/1‑94 (MQ=60)

                                                                         CATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTC                      <  SRR4302533.104460/94‑1 (MQ=60)

                                                                         CATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTC                      >  SRR4302533.2026079/1‑94 (MQ=60)

                                                                         CATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTC                      >  SRR4302533.3665177/1‑94 (MQ=60)

                                                                         CATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTC                      <  SRR4302533.2818511/94‑1 (MQ=60)

                                                                          ATGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCA                     >  SRR4302533.4571590/1‑94 (MQ=60)

                                                                           TGGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCAC                    >  SRR4302533.680620/1‑94 (MQ=60)

                                                                            GGCATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACC                   <  SRR4302533.5518056/94‑1 (MQ=60)

                                                                              CATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCAT                 <  SRR4302533.5239865/94‑1 (MQ=60)

                                                                               ATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATT                >  SRR4302533.4045368/1‑94 (MQ=60)

                                                                               ATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATT                >  SRR4302533.2083723/1‑94 (MQ=60)

                                                                               ATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATT                >  SRR4302533.745255/1‑94 (MQ=60)

                                                                               ATCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATT                <  SRR4302533.4054591/94‑1 (MQ=60)

                                                                                TCTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTT               >  SRR4302533.2981406/1‑94 (MQ=60)

                                                                                 CTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATTGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTT              >  SRR4302533.1792855/1‑94 (MQ=60)

                                                                                 CTAATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTT              >  SRR4302533.1792854/1‑94 (MQ=60)

                                                                                   AATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGC            >  SRR4302533.2671814/1‑94 (MQ=60)

                                                                                    ATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCT           >  SRR4302533.5815321/1‑94 (MQ=60)

                                                                                    ATTATGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCT           <  SRR4302533.4090677/94‑1 (MQ=60)

                                                                                        TGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAA       >  SRR4302533.3016968/1‑94 (MQ=60)

                                                                                        TGACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAA       >  SRR4302533.532346/1‑94 (MQ=60)

                                                                                         GACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAG      <  SRR4302533.6310957/94‑1 (MQ=60)

                                                                                         GACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAG      <  SRR4302533.5156101/94‑1 (MQ=60)

                                                                                         GACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAG      >  SRR4302533.3752927/1‑94 (MQ=60)

                                                                                         GACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAG      <  SRR4302533.520809/94‑1 (MQ=60)

                                                                                          ACGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGA     <  SRR4302533.5447920/94‑1 (MQ=60)

                                                                                           CGCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGAT    <  SRR4302533.1333075/94‑1 (MQ=60)

                                                                                            GCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGATT   <  SRR4302533.1828434/94‑1 (MQ=60)

                                                                                            GCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGATT   >  SRR4302533.4427983/1‑94 (MQ=60)

                                                                                            GCAAGCGTGGTGGGCGTCACCATTTCTGCCGAACACCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGATT   <  SRR4302533.4103197/94‑1 (MQ=60)

                                                                                             CAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGATTA  <  SRR4302533.1912057/94‑1 (MQ=60)

GTGAAAAATTGCAGTTAAAACCAGGGATGCGCGTACTGGATATTGGCTGCGGCTGGGGCGGACTGGCACACTACATGGCATCTAATTATGACGTAAGCGTGGTGGGCGTCACCATTTCTGCCGAACAGCAAAAAATGGCTCAGGAACGCTGTGAAGGCCTGGATGTCACCATTTTGCTGCAAGATTA  >  NC_000913/1739915‑1740101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`