Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,426,221 A→G G142G (GGT→GGC)  ubiX ← 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,426,2210AG100.0% 690.6 / NA 219G142G (GGT→GGC) ubiX3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (117/102);  total (117/102)

Only 100 of 237 total aligned reads displayed.

GTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTT  >  NC_000913/2426131‑2426310
                                                                                          |                                                                                         
gTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAATGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATcaccgcgcc                                                                                         >  1:708318/1‑93 (MQ=255)
gTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATcaccgcgcc                                                                                         <  1:5203543/93‑1 (MQ=255)
  cAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGa                                                                                       <  2:4169225/93‑1 (MQ=255)
    aGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGAtt                                                                                     >  1:4320982/1‑93 (MQ=255)
    aGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAAAGGGAGGCATAATCACCGCGCCGAtt                                                                                     >  1:5450168/1‑93 (MQ=255)
      aaCACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTc                                                                                   >  1:2579526/1‑93 (MQ=255)
       acacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCt                                                                                  <  2:1392548/93‑1 (MQ=255)
       acacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCt                                                                                  <  1:4035712/93‑1 (MQ=255)
       acacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCt                                                                                  <  2:2073538/93‑1 (MQ=255)
        cacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTg                                                                                 >  1:489532/1‑93 (MQ=255)
        cacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTg                                                                                 >  1:5295375/1‑93 (MQ=255)
        cacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTg                                                                                 >  2:3785853/1‑93 (MQ=255)
        cacGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTg                                                                                 >  1:3509597/1‑93 (MQ=255)
         acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTgc                                                                                <  2:3078035/93‑1 (MQ=255)
         acGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTgc                                                                                >  2:1358390/1‑93 (MQ=255)
          cGATTAACCGTCTGGTTTATCACATCATCAAGGGTTTGCGGGGGGTGATAAAACGCCGGAACGGGAGGCATAATCCTCGCGCTGATTTCTgcc                                                                               >  2:1888486/1‑93 (MQ=255)
          cGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTgcc                                                                               >  2:1007196/1‑93 (MQ=255)
           gATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTgccg                                                                              <  1:1061613/93‑1 (MQ=255)
            aTTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTgccgc                                                                             >  2:965836/1‑93 (MQ=255)
             ttAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTgccgcc                                                                            <  1:5533226/93‑1 (MQ=255)
             ttAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTgccgcc                                                                            <  2:3701201/93‑1 (MQ=255)
              tAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAACCGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCt                                                                           >  1:3415491/1‑93 (MQ=255)
                aCCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGa                                                                         <  2:4771315/93‑1 (MQ=255)
                  cGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGt                                                                       <  2:42937/93‑1 (MQ=255)
                   gTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTc                                                                      <  2:6096366/93‑1 (MQ=255)
                    tCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCa                                                                     >  1:1806310/1‑93 (MQ=255)
                    tCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCa                                                                     >  1:3774717/1‑93 (MQ=255)
                     cTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCAt                                                                    <  1:1770444/93‑1 (MQ=255)
                      tGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCAtt                                                                   <  1:2875705/93‑1 (MQ=255)
                      tGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCAtt                                                                   <  2:5826903/93‑1 (MQ=255)
                      tGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCAtt                                                                   >  2:5530210/1‑93 (MQ=255)
                        aTTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTaa                                                                 >  2:5685704/1‑93 (MQ=255)
                        aTTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTaa                                                                 <  1:3996399/93‑1 (MQ=255)
                        aTTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTaa                                                                 >  1:503583/1‑93 (MQ=255)
                          ttATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAAc                                                               >  2:666716/1‑93 (MQ=255)
                          ttATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAAc                                                               >  1:4384683/1‑93 (MQ=255)
                             tCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGGATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAATCGCa                                                            >  1:5083670/1‑93 (MQ=255)
                             tCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCa                                                            <  1:634116/93‑1 (MQ=255)
                               acaTCATCAAGGGATTGCGGGCGATGATAAAACGCGGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGa                                                          <  2:5511562/93‑1 (MQ=255)
                               acaTCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGa                                                          <  1:5091939/93‑1 (MQ=255)
                               acaTCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGa                                                          >  2:2687180/1‑93 (MQ=255)
                                catcatCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGAt                                                         <  2:912983/93‑1 (MQ=255)
                                catcatCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGAt                                                         >  1:3515846/1‑93 (MQ=255)
                                 atcatcAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATg                                                        <  2:3153100/93‑1 (MQ=255)
                                  tcatcaAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATgg                                                       <  1:2146075/93‑1 (MQ=255)
                                   catcaAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGc                                                      <  1:3014865/93‑1 (MQ=255)
                                   catcaAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGc                                                      >  2:4482061/1‑93 (MQ=255)
                                    atcaAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGcc                                                     >  2:2542059/1‑93 (MQ=255)
                                     tcaAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCt                                                    <  1:2933957/93‑1 (MQ=255)
                                     tcaAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCt                                                    <  2:3535428/93‑1 (MQ=255)
                                       aaGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTaa                                                  >  1:3926678/1‑93 (MQ=255)
                                       aaGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTaa                                                  >  2:2968347/1‑93 (MQ=255)
                                       aaGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTaa                                                  >  1:313824/1‑93 (MQ=255)
                                          ggATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCGGATGGCCTAAGTg                                               <  1:4672499/93‑1 (MQ=255)
                                           gATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGc                                              >  2:1119473/1‑93 (MQ=255)
                                           gATTGCGGGAGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGc                                              >  1:2718127/1‑93 (MQ=255)
                                            aTTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCa                                             <  2:5351300/93‑1 (MQ=255)
                                             ttGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCaa                                            >  1:3763302/1‑93 (MQ=255)
                                             ttGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCaa                                            <  1:3469815/93‑1 (MQ=255)
                                              tGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAAt                                           <  1:327879/93‑1 (MQ=255)
                                                 gggCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGgt                                        >  1:1360793/1‑93 (MQ=255)
                                                    cGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGtt                                     <  1:2036387/93‑1 (MQ=255)
                                                     gatgatAAAACGCGGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGttt                                    <  2:5940141/93‑1 (MQ=255)
                                                     gatgatAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGttt                                    <  2:76830/93‑1 (MQ=255)
                                                      atgatAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTc                                   >  2:2752861/1‑93 (MQ=255)
                                                       tgatAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTca                                  <  1:3656015/93‑1 (MQ=255)
                                                       tgatAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTca                                  >  2:5100534/1‑93 (MQ=255)
                                                          tAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTACGTGCAATGGTGTTTcacgc                               >  2:3716395/1‑93 (MQ=255)
                                                            aaaCGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTcacgcac                             <  1:2769489/93‑1 (MQ=255)
                                                             aaCGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTcacgcacg                            >  1:2271275/1‑93 (MQ=255)
                                                             aaCGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTcacgcacg                            >  1:953881/1‑93 (MQ=255)
                                                               cGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCAcgcacgca                          <  2:4935064/93‑1 (MQ=255)
                                                               cGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCAcgcacgca                          <  1:5161138/93‑1 (MQ=255)
                                                               cGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCAcgcacgca                          <  2:1709776/93‑1 (MQ=255)
                                                                gCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCag                         >  1:252274/1‑93 (MQ=255)
                                                                 ccGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCaga                        >  1:4109572/1‑93 (MQ=255)
                                                                    gAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCa                     <  2:494752/93‑1 (MQ=255)
                                                                     aaCGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCAc                    >  2:4976170/1‑93 (MQ=255)
                                                                     aaCGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGCGCAATGGTGTTTCACGCACGCAGAGAAc                    >  1:6009291/1‑93 (MQ=255)
                                                                       cGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCa                  >  1:6207166/1‑93 (MQ=255)
                                                                        gggATGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTACAATGGTGTTTCACGCACGCAGAGCACCaa                 <  2:3940708/93‑1 (MQ=255)
                                                                        gggAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCaa                 <  2:5467480/93‑1 (MQ=255)
                                                                        gggAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCaa                 <  1:5728352/93‑1 (MQ=255)
                                                                        gggAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCaa                 <  1:6088277/93‑1 (MQ=255)
                                                                        gggAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCaa                 >  1:1437114/1‑93 (MQ=255)
                                                                        gggAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCaa                 <  2:2483857/93‑1 (MQ=255)
                                                                          gAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACg               <  1:1882225/93‑1 (MQ=255)
                                                                            ggCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACggg             >  2:2423874/1‑93 (MQ=255)
                                                                            ggCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACggg             <  1:2047929/93‑1 (MQ=255)
                                                                             gCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGc            >  1:5399336/1‑93 (MQ=255)
                                                                             gCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGc            >  1:567787/1‑93 (MQ=255)
                                                                               aTAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGa          >  2:3454703/1‑93 (MQ=255)
                                                                               aTAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGa          <  2:757371/93‑1 (MQ=255)
                                                                                tAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGAc         >  1:1556112/1‑93 (MQ=255)
                                                                                  aTCACCGCGCCGATTTCTGCCGCCTTAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGc       >  2:2335202/1‑93 (MQ=255)
                                                                                  aTCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGc       >  2:5621534/1‑93 (MQ=255)
                                                                                  aTCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGc       >  2:4851164/1‑93 (MQ=255)
                                                                                   tCACCGCGCCGATTTCTGCCGCCTGAGTCATTCAAAGCAGATGGCCTAAGTGCAATGGTGTTTCACGCAAGACGAGAACCCACGGGCGTCGct      >  2:2267784/1‑93 (MQ=255)
                                                                                   tCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGct      >  2:3303657/1‑93 (MQ=255)
                                                                                     accgcgccgATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGctct    <  1:598773/93‑1 (MQ=255)
                                                                                          |                                                                                         
GTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTT  >  NC_000913/2426131‑2426310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTTCAG  >  NC_000913/2426128‑2426313
                                                                                             |                                                                                            
CTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGTCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCG                                                                                              >  SRR4302533.429673/1‑94 (MQ=60)
  GGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAATGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCC                                                                                            >  SRR4302533.712501/1‑94 (MQ=60)
  GGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCC                                                                                            <  SRR4302533.5932352/94‑1 (MQ=60)
   aaaaaaacacatttaacctttttgttttacCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCG                                                                                           <  SRR4302533.5316811/64‑1 (MQ=60)
   GTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCG                                                                                           <  SRR4302533.5234901/94‑1 (MQ=60)
   GTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCG                                                                                           <  SRR4302533.1870946/94‑1 (MQ=60)
      AAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATT                                                                                        >  SRR4302533.4347008/1‑94 (MQ=60)
      AAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAAAGGGAGGCATAATCACCGCGCCGATT                                                                                        >  SRR4302533.5482997/1‑94 (MQ=60)
        GAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTC                                                                                      <  SRR4302533.3861539/94‑1 (MQ=60)
        GAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTC                                                                                      >  SRR4302533.2595400/1‑94 (MQ=60)
         AACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCT                                                                                     <  SRR4302533.5118070/94‑1 (MQ=60)
          ACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTG                                                                                    >  SRR4302533.492460/1‑94 (MQ=60)
          ACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTG                                                                                    >  SRR4302533.4484501/1‑94 (MQ=60)
          ACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTG                                                                                    >  SRR4302533.3531233/1‑94 (MQ=60)
          ACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTG                                                                                    >  SRR4302533.3531234/1‑94 (MQ=60)
          ACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTG                                                                                    <  SRR4302533.4060278/94‑1 (MQ=60)
          ACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTG                                                                                    >  SRR4302533.2739224/1‑94 (MQ=60)
          ACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTG                                                                                    >  SRR4302533.5327090/1‑94 (MQ=60)
           CACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGC                                                                                   >  SRR4302533.155015/1‑94 (MQ=60)
            ACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCC                                                                                  >  SRR4302533.6027557/1‑94 (MQ=60)
            ACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCC                                                                                  <  SRR4302533.2972847/94‑1 (MQ=60)
            ACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCC                                                                                  <  SRR4302533.378817/94‑1 (MQ=60)
              GATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGC                                                                                <  SRR4302533.1067850/94‑1 (MQ=60)
               ATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGACGATTTCTGCCGCC                                                                               >  SRR4302533.5161757/1‑94 (MQ=60)
                TTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAACCGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCT                                                                              >  SRR4302533.3436595/1‑94 (MQ=60)
                TTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCT                                                                              <  SRR4302533.5069521/94‑1 (MQ=60)
                TTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCT                                                                              <  SRR4302533.5566633/94‑1 (MQ=60)
                   ACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCCCCGCGCCGATTTCTGCCGCCTGAG                                                                           <  SRR4302533.2615964/94‑1 (MQ=60)
                   ACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAG                                                                           <  SRR4302533.4608422/94‑1 (MQ=60)
                   ACCGTCTGATTTATCACATCATCAAGGGATTGCGGGAGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAG                                                                           >  SRR4302533.1618886/1‑94 (MQ=60)
                    CGGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGT                                                                          <  SRR4302533.1142929/94‑1 (MQ=60)
                     CGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTC                                                                         <  SRR4302533.1807274/94‑1 (MQ=60)
                     CGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTC                                                                         <  SRR4302533.2942493/94‑1 (MQ=60)
                      GTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCA                                                                        >  SRR4302533.1817303/1‑94 (MQ=60)
                      GTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCA                                                                        >  SRR4302533.3797855/1‑94 (MQ=60)
                      GTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCA                                                                        >  SRR4302533.4004436/1‑94 (MQ=60)
                        CTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATT                                                                      <  SRR4302533.6203835/94‑1 (MQ=60)
                        CTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATT                                                                      <  SRR4302533.1781224/94‑1 (MQ=60)
                         TGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTA                                                                     <  SRR4302533.2893400/94‑1 (MQ=60)
                         TGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTA                                                                     >  SRR4302533.3528411/1‑94 (MQ=60)
                         TGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTA                                                                     >  SRR4302533.513922/1‑94 (MQ=60)
                         TGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTA                                                                     <  SRR4302533.2319770/94‑1 (MQ=60)
                          GATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAA                                                                    >  SRR4302533.506572/1‑94 (MQ=60)
                           ATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAA                                                                   <  SRR4302533.4020736/94‑1 (MQ=60)
                            TTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAAC                                                                  >  SRR4302533.4411157/1‑94 (MQ=60)
                               ATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGGATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAATCGCA                                                               >  SRR4302533.5114395/1‑94 (MQ=60)
                               ATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCA                                                               >  SRR4302533.2795372/1‑94 (MQ=60)
                                TCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAG                                                              <  SRR4302533.637847/94‑1 (MQ=60)
                                TCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAG                                                              >  SRR4302533.4392863/1‑94 (MQ=60)
                                 CACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGA                                                             >  SRR4302533.540377/1‑94 (MQ=60)
                                  ACATCATCAAGGGATTGCGGGCGATGATAAACCGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGAT                                                            <  SRR4302533.5303658/94‑1 (MQ=60)
                                  ACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGAT                                                            >  SRR4302533.3537522/1‑94 (MQ=60)
                                  ACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGAT                                                            <  SRR4302533.5122700/94‑1 (MQ=60)
                                   CATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATG                                                           <  SRR4302533.6216074/94‑1 (MQ=60)
                                   CATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATG                                                           <  SRR4302533.5068900/94‑1 (MQ=60)
                                    ATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGG                                                          <  SRR4302533.3334571/94‑1 (MQ=60)
                                    ATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGG                                                          <  SRR4302533.2783200/94‑1 (MQ=60)
                                     TCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGC                                                         <  SRR4302533.348685/94‑1 (MQ=60)
                                     TCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGC                                                         <  SRR4302533.2159293/94‑1 (MQ=60)
                                      CATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCC                                                        <  SRR4302533.3033302/94‑1 (MQ=60)
                                       ATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCT                                                       <  SRR4302533.3195718/94‑1 (MQ=60)
                                       ATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCT                                                       >  SRR4302533.4043922/1‑94 (MQ=60)
                                       ATCAAGGGACTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCT                                                       <  SRR4302533.2989088/94‑1 (MQ=60)
                                        TCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTA                                                      <  SRR4302533.2951896/94‑1 (MQ=60)
                                         CAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAA                                                     >  SRR4302533.3950650/1‑94 (MQ=60)
                                         CAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAA                                                     >  SRR4302533.315742/1‑94 (MQ=60)
                                          AAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAG                                                    >  SRR4302533.6054208/1‑94 (MQ=60)
                                           AGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGT                                                   <  SRR4302533.4074703/94‑1 (MQ=60)
                                           AGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGT                                                   >  SRR4302533.4223043/1‑94 (MQ=60)
                                           AGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGT                                                   <  SRR4302533.707485/94‑1 (MQ=60)
                                            GGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTG                                                  >  SRR4302533.3761154/1‑94 (MQ=60)
                                             GGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCGGATGGCCTAAGTGC                                                 <  SRR4302533.4700813/94‑1 (MQ=60)
                                             GGATTGCGGGAGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGC                                                 >  SRR4302533.2734815/1‑94 (MQ=60)
                                               ATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAA                                               >  SRR4302533.3786372/1‑94 (MQ=60)
                                               ATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAA                                               >  SRR4302533.1930550/1‑94 (MQ=60)
                                               ATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACAGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAA                                               >  SRR4302533.1426289/1‑94 (MQ=60)
                                                TTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAAT                                              <  SRR4302533.3505713/94‑1 (MQ=60)
                                                TTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAAT                                              <  SRR4302533.3491234/94‑1 (MQ=60)
                                                 TGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATG                                             <  SRR4302533.3771709/94‑1 (MQ=60)
                                                 TGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATG                                             <  SRR4302533.329875/94‑1 (MQ=60)
                                                  GCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGG                                            <  SRR4302533.5552181/94‑1 (MQ=60)
                                                  GCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGG                                            <  SRR4302533.4001690/94‑1 (MQ=60)
                                                  GCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGG                                            <  SRR4302533.878570/94‑1 (MQ=60)
                                                   CGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGT                                           >  SRR4302533.1368968/1‑94 (MQ=60)
                                                   CGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGT                                           >  SRR4302533.6287817/1‑94 (MQ=60)
                                                       CGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTT                                       <  SRR4302533.2048947/94‑1 (MQ=60)
                                                       CGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTT                                       >  SRR4302533.2059708/1‑94 (MQ=60)
                                                         ATGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCA                                     <  SRR4302533.879919/94‑1 (MQ=60)
                                                          TGATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCAC                                    <  SRR4302533.3678488/94‑1 (MQ=60)
                                                            ATAAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGC                                  >  SRR4302533.5722839/1‑94 (MQ=60)
                                                              AAAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCAC                                <  SRR4302533.5027211/94‑1 (MQ=60)
                                                               AAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACG                               >  SRR4302533.959485/1‑94 (MQ=60)
                                                               AAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACG                               <  SRR4302533.2786484/94‑1 (MQ=60)
                                                               AAACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACG                               >  SRR4302533.2285330/1‑94 (MQ=60)
                                                                AACGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGC                              <  SRR4302533.3232559/94‑1 (MQ=60)
                                                                  CGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAG                            <  SRR4302533.5192293/94‑1 (MQ=60)
                                                                  CGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAG                            >  SRR4302533.1843945/1‑94 (MQ=60)
                                                                  CGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAG                            >  SRR4302533.253827/1‑94 (MQ=60)
                                                                  CGCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAG                            <  SRR4302533.2455566/94‑1 (MQ=60)
                                                                   GCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGA                           >  SRR4302533.4134556/1‑94 (MQ=60)
                                                                   GCCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGA                           >  SRR4302533.5781003/1‑94 (MQ=60)
                                                                    CCGGAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAG                          >  SRR4302533.3559117/1‑94 (MQ=60)
                                                                       GAACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGCGCAATGGTGTTTCACGCACGCAGAGAAC                       >  SRR4302533.6045697/1‑94 (MQ=60)
                                                                        AACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACC                      >  SRR4302533.5470480/1‑94 (MQ=60)
                                                                         ACGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCA                     >  SRR4302533.6244390/1‑94 (MQ=60)
                                                                          CGGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAA                    >  SRR4302533.1445791/1‑94 (MQ=60)
                                                                           GGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAAC                   <  SRR4302533.6125081/94‑1 (MQ=60)
                                                                           GGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAAC                   >  SRR4302533.1548576/1‑94 (MQ=60)
                                                                           GGGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAAC                   <  SRR4302533.5762944/94‑1 (MQ=60)
                                                                            GGAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACG                  >  SRR4302533.5349825/1‑94 (MQ=60)
                                                                             GAGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGG                 <  SRR4302533.1893686/94‑1 (MQ=60)
                                                                              AGGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGG                <  SRR4302533.2573839/94‑1 (MQ=60)
                                                                               GGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGC               >  SRR4302533.571147/1‑94 (MQ=60)
                                                                               GGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGC               <  SRR4302533.2060557/94‑1 (MQ=60)
                                                                               GGCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGC               >  SRR4302533.5431782/1‑94 (MQ=60)
                                                                                GCATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCG              <  SRR4302533.3151180/94‑1 (MQ=60)
                                                                                  ATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGAC            <  SRR4302533.2098305/94‑1 (MQ=60)
                                                                                  ATAATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGAC            >  SRR4302533.1565478/1‑94 (MQ=60)
                                                                                     ATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCT         >  SRR4302533.5614098/1‑94 (MQ=60)
                                                                                     ATCACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCT         >  SRR4302533.5568970/1‑94 (MQ=60)
                                                                                       CACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCT       <  SRR4302533.5977477/94‑1 (MQ=60)
                                                                                       CACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCT       <  SRR4302533.4889104/94‑1 (MQ=60)
                                                                                       CACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCT       <  SRR4302533.2274098/94‑1 (MQ=60)
                                                                                       CACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCT       >  SRR4302533.4086488/1‑94 (MQ=60)
                                                                                        ACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTT      <  SRR4302533.602299/94‑1 (MQ=60)
                                                                                        ACCGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTT      <  SRR4302533.521032/94‑1 (MQ=60)
                                                                                          CGCGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTTC    <  SRR4302533.2065153/94‑1 (MQ=60)
                                                                                            CGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTTCAG  >  SRR4302533.3261546/1‑94 (MQ=60)
                                                                                            CGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTTCAG  >  SRR4302533.4118991/1‑94 (MQ=60)
                                                                                            CGCCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTTCAG  <  SRR4302533.2250077/94‑1 (MQ=60)
                                                                                             |                                                                                            
CTGGTCAAGAACACGATTAACCGTCTGATTTATCACATCATCAAGGGATTGCGGGCGATGATAAAACGCCGGAACGGGAGGCATAATCACCGCACCGATTTCTGCCGCCTGAGTCATTAAACGCAGATGGCCTAAGTGCAATGGTGTTTCACGCACGCAGAGCACCAACGGGCGACGCTCTTTCAG  >  NC_000913/2426128‑2426313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑