Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,887,232	A→G	G297G (GGT→GGC)	cysI ←	sulfite reductase, alpha subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,887,232	0	A	G	100.0%	693.6 / NA	218	G297G (GGT→GGC)	cysI	sulfite reductase, alpha subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (128/90); total (128/90)

Only 100 of 226 total aligned reads displayed.

CGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTACCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGC  >  NC_000913/2887142‑2887321

 gcgcgACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGccc                                                                                        >  2:198610/1‑93 (MQ=255)

    cgACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGCTCGGTTCGGTTGCCCCAg                                                                                     >  2:1165003/1‑93 (MQ=255)

    cgACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAg                                                                                     <  1:5163907/93‑1 (MQ=255)

     gACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGt                                                                                    >  2:1658587/1‑93 (MQ=255)

     gACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGCTTTGGCATTTTTACGATCGGCGCGGTTGACCCAGt                                                                                    >  2:746782/1‑93 (MQ=255)

      aCGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTc                                                                                   >  1:1655280/1‑93 (MQ=255)

        gCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCAc                                                                                 >  2:6244257/1‑93 (MQ=255)

          tCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGc                                                                               >  1:2802565/1‑93 (MQ=255)

           ccACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCt                                                                              >  1:5614604/1‑93 (MQ=255)

           ccACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCt                                                                              >  2:1812595/1‑93 (MQ=255)

                tCCGCTTTAAACGTCTCAACCCCCAAGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGtt                                                                         >  1:4057867/1‑93 (MQ=255)

                  cGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGt                                                                       <  1:4300605/93‑1 (MQ=255)

                  cGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGt                                                                       <  1:5709465/93‑1 (MQ=255)

                  cGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGt                                                                       <  1:2471714/93‑1 (MQ=255)

                  cGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGt                                                                       <  2:3932271/93‑1 (MQ=255)

                   gCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTc                                                                      >  1:4421441/1‑93 (MQ=255)

                   gCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTc                                                                      >  1:4854914/1‑93 (MQ=255)

                    cTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCa                                                                     >  1:1915671/1‑93 (MQ=255)

                    cTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCa                                                                     <  2:5254163/93‑1 (MQ=255)

                     tttAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCac                                                                    >  1:1537381/1‑93 (MQ=255)

                     tttAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCac                                                                    >  1:3099242/1‑93 (MQ=255)

                     tttAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCac                                                                    <  2:5959579/93‑1 (MQ=255)

                       tAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCacga                                                                  >  1:4158947/1‑93 (MQ=255)

                       tAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCacga                                                                  >  1:1798047/1‑93 (MQ=255)

                         aaCGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCacgacg                                                                <  1:1533097/93‑1 (MQ=255)

                          aCGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACgg                                                               >  1:2726155/1‑93 (MQ=255)

                          aCGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACgg                                                               >  1:5478464/1‑93 (MQ=255)

                           cGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGc                                                              <  2:722285/93‑1 (MQ=255)

                            gTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCt                                                             <  2:1014332/93‑1 (MQ=255)

                            gTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCt                                                             >  1:1758447/1‑93 (MQ=255)

                             tctcAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCtt                                                            >  2:5189060/1‑93 (MQ=255)

                             tctcAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCtt                                                            >  1:4460872/1‑93 (MQ=255)

                             tctcAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCtt                                                            >  2:5775408/1‑93 (MQ=255)

                              ctcAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTc                                                           <  2:1545938/93‑1 (MQ=255)

                               tcAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCg                                                          >  1:3697313/1‑93 (MQ=255)

                               tcAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCg                                                          <  2:4968037/93‑1 (MQ=255)

                                 aaCCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGc                                                        <  2:2207096/93‑1 (MQ=255)

                                  aCCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGcc                                                       >  2:406363/1‑93 (MQ=255)

                                  aCCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGcc                                                       >  1:2652093/1‑93 (MQ=255)

                                   cccccACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCa                                                      <  2:5383717/93‑1 (MQ=255)

                                    ccccACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCAc                                                     >  1:6294459/1‑93 (MQ=255)

                                     cccACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCAcc                                                    >  1:673249/1‑93 (MQ=255)

                                      ccACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCg                                                   >  2:1075698/1‑93 (MQ=255)

                                       cACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGc                                                  >  2:3539615/1‑93 (MQ=255)

                                       cACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGc                                                  <  1:1686970/93‑1 (MQ=255)

                                          gcgcTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAg                                               >  2:794793/1‑93 (MQ=255)

                                          gcgcTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAg                                               >  1:3853592/1‑93 (MQ=255)

                                               ccAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTAt                                          <  2:4958434/93‑1 (MQ=255)

                                               ccAGCGTGTATTTGGTTTTGGCATTTTTACGATCGATTCTGTTGCCCCAGTCACGCTGAGTTGTGACGACGGGTTCCGCCACCGCCAGCGTAt                                          >  2:3433820/1‑93 (MQ=255)

                                                cAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATg                                         <  2:2765817/93‑1 (MQ=255)

                                                cAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATg                                         >  2:463471/1‑93 (MQ=255)

                                                  gCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCt                                       >  2:3768016/1‑93 (MQ=255)

                                                   cGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTc                                      >  2:2346168/1‑93 (MQ=255)

                                                   cGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTc                                      >  1:1017279/1‑93 (MQ=255)

                                                   cGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTc                                      >  1:6040296/1‑93 (MQ=255)

                                                    gtgtATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTcc                                     >  1:5964543/1‑93 (MQ=255)

                                                    gtgtATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTcc                                     >  1:1122067/1‑93 (MQ=255)

                                                     tgtATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCa                                    >  1:6028732/1‑93 (MQ=255)

                                                     tgtATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCa                                    >  1:5295646/1‑93 (MQ=255)

                                                      gtATTGGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAg                                   <  2:549059/93‑1 (MQ=255)

                                                       tATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGc                                  >  2:415109/1‑93 (MQ=255)

                                                        aTTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCg                                 >  1:4126278/1‑93 (MQ=255)

                                                         tttGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCgg                                >  2:4378754/1‑93 (MQ=255)

                                                          ttGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGc                               >  1:5372344/1‑93 (MQ=255)

                                                           tGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCa                              <  1:874880/93‑1 (MQ=255)

                                                           tGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCa                              <  1:3171187/93‑1 (MQ=255)

                                                            ggTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAg                             >  2:4308052/1‑93 (MQ=255)

                                                            ggTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAg                             <  2:1096614/93‑1 (MQ=255)

                                                              ttttGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGAt                           <  2:1354103/93‑1 (MQ=255)

                                                              ttttGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGAt                           >  1:4749529/1‑93 (MQ=255)

                                                               tttGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATa                          <  2:2537619/93‑1 (MQ=255)

                                                                ttGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAg                         >  1:5106772/1‑93 (MQ=255)

                                                                ttGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCCGCCACCGCCAGCGTATGCTCCAGCGGCAGATAg                         >  1:4514296/1‑93 (MQ=255)

                                                                 tGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGc                        >  2:3721582/1‑93 (MQ=255)

                                                                  ggCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCAGCGCCAGCGTATGCTCCAGCCGCAGATAGcc                       >  1:1334909/1‑93 (MQ=255)

                                                                      tttttACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAac                   <  2:416372/93‑1 (MQ=255)

                                                                        tttACGATCGGTTCGGTTGTCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGAGAGCCAAactc                 >  2:6129041/1‑93 (MQ=255)

                                                                        tttACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactc                 >  2:1718092/1‑93 (MQ=255)

                                                                        tttACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactc                 >  1:1190723/1‑93 (MQ=255)

                                                                          tACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactcac               <  1:293729/93‑1 (MQ=255)

                                                                           aCGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactcact              <  2:3283337/93‑1 (MQ=255)

                                                                           aCGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactcact              >  1:5439167/1‑93 (MQ=255)

                                                                           aCGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactcact              <  1:1233512/93‑1 (MQ=255)

                                                                            cGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactcactc             >  1:1856986/1‑93 (MQ=255)

                                                                            cGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactcactc             <  1:6211943/93‑1 (MQ=255)

                                                                             gATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAactcactcc            >  1:3255877/1‑92 (MQ=255)

                                                                             gATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTcg            >  1:2090655/1‑93 (MQ=255)

                                                                              aTCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTcgc           >  1:2273060/1‑93 (MQ=255)

                                                                               tcggttcggtTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGACCAACTAACTcacg          >  1:109746/1‑93 (MQ=255)

                                                                                cggttcggttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCgg         <  1:5776301/93‑1 (MQ=255)

                                                                                  gttcggttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGCTAGCCAAACTCACTCGCggcg       >  1:3760066/1‑91 (MQ=255)

                                                                                  gttcggttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTg       >  2:2703662/1‑93 (MQ=255)

                                                                                   ttcggttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGc      >  1:5468436/1‑93 (MQ=255)

                                                                                   ctcggttGCCCCAGTCACGCTGAGTTGTCACGACGGCGTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGc      <  1:731261/92‑1 (MQ=255)

                                                                                     cggttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCgg    <  2:145392/93‑1 (MQ=255)

                                                                                      ggttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCggg   >  1:2525198/1‑93 (MQ=255)

                                                                                      ggttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCggg   <  1:2561233/93‑1 (MQ=255)

                                                                                       gttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGc  >  2:5333810/1‑93 (MQ=255)

                                                                                       gttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGc  >  1:2618519/1‑93 (MQ=255)

                                                                                       gttGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGc  >  1:396089/1‑93 (MQ=255)

CGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTACCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGC  >  NC_000913/2887142‑2887321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTACCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGCGTAG  >  NC_000913/2887139‑2887325

CCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTG                                                                                               >  SRR4302533.95320/1‑94 (MQ=60)

CCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTG                                                                                               <  SRR4302533.2945789/94‑1 (MQ=60)

CCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTG                                                                                               >  SRR4302533.1995369/1‑94 (MQ=60)

CCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTG                                                                                               >  SRR4302533.1462916/1‑94 (MQ=60)

CCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTG                                                                                               <  SRR4302533.1271975/94‑1 (MQ=60)

   CGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCC                                                                                            <  SRR4302533.1000382/94‑1 (MQ=60)

      GCGACGCTCCACTTCCGCTTTAAGCGTCTCAGCCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAG                                                                                         <  SRR4302533.1932869/94‑1 (MQ=60)

      GCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAG                                                                                         <  SRR4302533.654415/94‑1 (MQ=60)

       CGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGT                                                                                        >  SRR4302533.3707980/1‑94 (MQ=60)

       CGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGT                                                                                        >  SRR4302533.6134491/1‑94 (MQ=60)

       CGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGT                                                                                        <  SRR4302533.5195088/94‑1 (MQ=60)

        GACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTC                                                                                       >  SRR4302533.2334604/1‑94 (MQ=60)

        GACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTC                                                                                       >  SRR4302533.1665301/1‑94 (MQ=60)

           ccgCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACG                                                                                    <  SRR4302533.5916639/91‑1 (MQ=60)

            CTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGC                                                                                   >  SRR4302533.2819813/1‑94 (MQ=60)

             TCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCT                                                                                  >  SRR4302533.5648541/1‑94 (MQ=60)

             TCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCT                                                                                  >  SRR4302533.2622050/1‑94 (MQ=60)

              CCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTG                                                                                 >  SRR4302533.687647/1‑94 (MQ=60)

                 CTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGT                                                                              <  SRR4302533.2853738/94‑1 (MQ=60)

                 CTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGT                                                                              >  SRR4302533.4095087/1‑94 (MQ=60)

                  TTCCGCTTTAAACGTCTCAACCCCCAAGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTT                                                                             >  SRR4302533.4082568/1‑94 (MQ=60)

                    CCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGT                                                                           >  SRR4302533.1210433/1‑94 (MQ=60)

                     CGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTC                                                                          <  SRR4302533.4326469/94‑1 (MQ=60)

                     CGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTC                                                                          >  SRR4302533.4448171/1‑94 (MQ=60)

                     CGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTC                                                                          >  SRR4302533.4884335/1‑94 (MQ=60)

                     CGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTC                                                                          <  SRR4302533.2486958/94‑1 (MQ=60)

                     CGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTC                                                                          <  SRR4302533.5743953/94‑1 (MQ=60)

                      GCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCA                                                                         >  SRR4302533.1927365/1‑94 (MQ=60)

                       CTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCAC                                                                        >  SRR4302533.1546617/1‑94 (MQ=60)

                       CTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCAC                                                                        >  SRR4302533.3118295/1‑94 (MQ=60)

                         TTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGA                                                                      >  SRR4302533.4184151/1‑94 (MQ=60)

                         TTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGA                                                                      >  SRR4302533.1808988/1‑94 (MQ=60)

                          TAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGAC                                                                     <  SRR4302533.2169947/94‑1 (MQ=60)

                           AAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGACACGCTGAGTTGTCCCGACG                                                                    >  SRR4302533.3136826/1‑94 (MQ=60)

                            AACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGG                                                                   >  SRR4302533.5511490/1‑94 (MQ=60)

                            AACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGG                                                                   >  SRR4302533.2742876/1‑94 (MQ=60)

                            AACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGG                                                                   <  SRR4302533.1542306/94‑1 (MQ=60)

                              CGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCT                                                                 >  SRR4302533.1769166/1‑94 (MQ=60)

                               GTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTT                                                                >  SRR4302533.408055/1‑94 (MQ=60)

                               GTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTT                                                                >  SRR4302533.4487855/1‑94 (MQ=60)

                                TCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTC                                                               <  SRR4302533.2694165/94‑1 (MQ=60)

                                 CTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCG                                                              >  SRR4302533.3720025/1‑94 (MQ=60)

                                 CTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCG                                                              <  SRR4302533.176307/94‑1 (MQ=60)

                                 CTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCG                                                              <  SRR4302533.1104273/94‑1 (MQ=60)

                                 CTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCG                                                              <  SRR4302533.1817878/94‑1 (MQ=60)

                                   CAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGC                                                            >  SRR4302533.4808206/1‑94 (MQ=60)

                                   CAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGC                                                            >  SRR4302533.1655327/1‑94 (MQ=60)

                                   CAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGC                                                            <  SRR4302533.2654631/94‑1 (MQ=60)

                                    AACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCC                                                           >  SRR4302533.2668388/1‑94 (MQ=60)

                                     ACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCA                                                          >  SRR4302533.2311481/1‑94 (MQ=60)

                                      CCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCAC                                                         >  SRR4302533.6331981/1‑94 (MQ=60)

                                       CCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACC                                                        >  SRR4302533.677224/1‑94 (MQ=60)

                                       CCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGAGCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACC                                                        >  SRR4302533.4464068/1‑94 (MQ=60)

                                         CCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGC                                                      >  SRR4302533.1364044/1‑94 (MQ=60)

                                          CACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCC                                                     <  SRR4302533.1697192/94‑1 (MQ=60)

                                          CACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCC                                                     <  SRR4302533.1551902/94‑1 (MQ=60)

                                           ACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCA                                                    >  SRR4302533.1542346/1‑94 (MQ=60)

                                            CGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAG                                                   >  SRR4302533.3877131/1‑94 (MQ=60)

                                            CGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGGTGTCACGACGGCTTCGGCCACCGCCAG                                                   >  SRR4302533.177930/1‑94 (MQ=60)

                                             GCGCTCCATGGTGTATTTGGTTTTGGCATTTTTACGATCTGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGC                                                  <  SRR4302533.5501570/94‑1 (MQ=60)

                                             GCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGC                                                  <  SRR4302533.578816/94‑1 (MQ=60)

                                              CGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGTCCACCGCCAGCG                                                 >  SRR4302533.5711429/1‑94 (MQ=60)

                                              CGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCG                                                 >  SRR4302533.5635678/1‑94 (MQ=60)

                                              CGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCG                                                 <  SRR4302533.801297/94‑1 (MQ=60)

                                              CGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCG                                                 >  SRR4302533.6066950/1‑94 (MQ=60)

                                               GCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGT                                                >  SRR4302533.3871478/1‑94 (MQ=60)

                                                    AGCGGGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCT                                           >  SRR4302533.3936200/1‑94 (MQ=60)

                                                     GCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTC                                          >  SRR4302533.6076898/1‑94 (MQ=60)

                                                     GCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTC                                          >  SRR4302533.1023259/1‑94 (MQ=60)

                                                      CGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCC                                         >  SRR4302533.1128728/1‑94 (MQ=60)

                                                      CGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCC                                         >  SRR4302533.3058394/1‑94 (MQ=60)

                                                      CGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCC                                         >  SRR4302533.6000633/1‑94 (MQ=60)

                                                       GTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCA                                        >  SRR4302533.547808/1‑94 (MQ=60)

                                                       GTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCA                                        >  SRR4302533.420043/1‑94 (MQ=60)

                                                       GTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCA                                        >  SRR4302533.1207605/1‑94 (MQ=60)

                                                       GTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCA                                        >  SRR4302533.6065271/1‑94 (MQ=60)

                                                       GTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCA                                        >  SRR4302533.5327364/1‑94 (MQ=60)

                                                          TATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCG                                     >  SRR4302533.4151325/1‑94 (MQ=60)

                                                          TATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGCCTTCGGCCACCGCCAGCGTATGCTCCAGCG                                     <  SRR4302533.2561209/94‑1 (MQ=60)

                                                           ATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGG                                    >  SRR4302533.2754664/1‑94 (MQ=60)

                                                            TTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCAGCGCCAGCGTATGCTCCAGCGGC                                   >  SRR4302533.4335138/1‑94 (MQ=60)

                                                            TTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGC                                   >  SRR4302533.5404620/1‑94 (MQ=60)

                                                            TTTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGC                                   >  SRR4302533.5404621/1‑94 (MQ=60)

                                                             TTGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCA                                  >  SRR4302533.2508515/1‑94 (MQ=60)

                                                              TGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAG                                 <  SRR4302533.3190705/94‑1 (MQ=60)

                                                              TGGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAG                                 <  SRR4302533.880015/94‑1 (MQ=60)

                                                               TGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGA                                <  SRR4302533.6267016/94‑1 (MQ=60)

                                                               GGTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGA                                >  SRR4302533.1681982/1‑94 (MQ=60)

                                                                GTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGAT                               >  SRR4302533.4778327/1‑94 (MQ=60)

                                                                GTTTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGAA                               >  SRR4302533.5513433/1‑94 (MQ=60)

                                                                  TTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAG                             <  SRR4302533.4883071/94‑1 (MQ=60)

                                                                  TTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAG                             >  SRR4302533.5137627/1‑94 (MQ=60)

                                                                  TTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCAACCGCCAGCGTATGCTCCAGCGGCAGATAG                             >  SRR4302533.4164821/1‑94 (MQ=60)

                                                                  TTTGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCCGCCACCGCCAGCGTATGCTCCAGCGGCAGATAG                             >  SRR4302533.4541633/1‑94 (MQ=60)

                                                                    TGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCAGCGCCAGCGTATGCTCCAGCCGCAGATAGCC                           >  SRR4302533.1342919/1‑94 (MQ=60)

                                                                    TGGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCC                           >  SRR4302533.945382/1‑94 (MQ=60)

                                                                     GGCATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCA                          <  SRR4302533.5930214/94‑1 (MQ=60)

                                                                       CATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAA                        <  SRR4302533.6278378/94‑1 (MQ=60)

                                                                        ATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAAC                       <  SRR4302533.5278288/94‑1 (MQ=60)

                                                                        ATTTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAAC                       <  SRR4302533.3447874/94‑1 (MQ=60)

                                                                          TTTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTC                     >  SRR4302533.1197878/1‑94 (MQ=60)

                                                                           TTTACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCA                    >  SRR4302533.4504794/1‑94 (MQ=60)

                                                                             TACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGTCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACT                  <  SRR4302533.4908464/94‑1 (MQ=60)

                                                                             TACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACT                  <  SRR4302533.5161498/94‑1 (MQ=60)

                                                                             TACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACT                  <  SRR4302533.295522/94‑1 (MQ=60)

                                                                             TACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACT                  >  SRR4302533.5471925/1‑94 (MQ=60)

                                                                              ACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTC                 <  SRR4302533.1240892/94‑1 (MQ=60)

                                                                              ACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTC                 <  SRR4302533.2970476/94‑1 (MQ=60)

                                                                              ACGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTC                 >  SRR4302533.1868313/1‑94 (MQ=60)

                                                                               CGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCG                <  SRR4302533.6249194/94‑1 (MQ=60)

                                                                               CGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCG                >  SRR4302533.2103530/1‑94 (MQ=60)

                                                                               CGATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCC                >  SRR4302533.3275954/1‑94 (MQ=60)

                                                                                GATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGC               <  SRR4302533.3204425/94‑1 (MQ=60)

                                                                                GATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGC               >  SRR4302533.5443487/1‑94 (MQ=60)

                                                                                GATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGC               >  SRR4302533.2287128/1‑94 (MQ=60)

                                                                                 ATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGaccaactaactcacg              >  SRR4302533.110442/1‑79 (MQ=60)

                                                                                 ATCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCG              >  SRR4302533.1317929/1‑94 (MQ=60)

                                                                                  TCGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGG             <  SRR4302533.1103018/94‑1 (MQ=60)

                                                                                   CGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGT            <  SRR4302533.5811188/94‑1 (MQ=60)

                                                                                   CGGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGT            <  SRR4302533.463212/94‑1 (MQ=60)

                                                                                    GGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGCTAGCCAAACTCACTCGCGGCG           >  SRR4302533.3783115/1‑94 (MQ=60)

                                                                                    GGTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGGG           >  SRR4302533.6030474/1‑94 (MQ=60)

                                                                                     GTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGC          >  SRR4302533.3764193/1‑94 (MQ=60)

                                                                                     GTTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGC          >  SRR4302533.5501394/1‑94 (MQ=60)

                                                                                      CTCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCGTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCG         <  SRR4302533.735567/94‑1 (MQ=60)

                                                                                       TCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGG        >  SRR4302533.1821568/1‑94 (MQ=60)

                                                                                       TCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGG        <  SRR4302533.4078530/94‑1 (MQ=60)

                                                                                       TCGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGG        <  SRR4302533.5385179/94‑1 (MQ=60)

                                                                                        CGTTTGCCCCAGTCACGCTGAGTGGTCACGACGGCTTCGTCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGG       <  SRR4302533.1133145/94‑1 (MQ=60)

                                                                                        CGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGG       >  SRR4302533.441854/1‑94 (MQ=60)

                                                                                        CGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGG       >  SRR4302533.2540748/1‑94 (MQ=60)

                                                                                        CGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGG       <  SRR4302533.2637703/94‑1 (MQ=60)

                                                                                        CGGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGG       >  SRR4302533.1925145/1‑94 (MQ=60)

                                                                                         GGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGC      >  SRR4302533.2634594/1‑94 (MQ=60)

                                                                                         GGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGC      <  SRR4302533.2577005/94‑1 (MQ=60)

                                                                                         GGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGC      <  SRR4302533.1140334/94‑1 (MQ=60)

                                                                                         GGTTGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGC      >  SRR4302533.398488/1‑94 (MQ=60)

                                                                                            TGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGCGTA   <  SRR4302533.6169772/94‑1 (MQ=60)

                                                                                            TGCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGCGTA   >  SRR4302533.2769846/1‑94 (MQ=60)

                                                                                             GCCCCGGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGCGTAG  <  SRR4302533.616031/94‑1 (MQ=60)

                                                                                             GCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCACACTCACTCGCGGTGCGGGCGTAG  >  SRR4302533.2092659/1‑94 (MQ=60)

                                                                                             GCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGCGTAG  <  SRR4302533.4484701/94‑1 (MQ=60)

                                                                                             GCCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGCGTAG  >  SRR4302533.3673107/1‑94 (MQ=60)

CCCCGCGCGACGCTCCACTTCCGCTTTAAACGTCTCAACCCCCACGCGCTCCAGCGTGTATTTGGTTTTGGCATTTTTACGATCGGTTCGGTTACCCCAGTCACGCTGAGTTGTCACGACGGCTTCGGCCACCGCCAGCGTATGCTCCAGCGGCAGATAGCCAAACTCACTCGCGGTGCGGGCGTAG  >  NC_000913/2887139‑2887325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`