Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,932,215 T→C intergenic (‑505/‑42) fucA ← / → fucP L‑fuculose‑1‑phosphate aldolase/fucose permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,932,2150TC100.0% 832.2 / NA 255intergenic (‑505/‑42)fucA/fucPL‑fuculose‑1‑phosphate aldolase/fucose permease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (129/126);  total (129/126)

Only 100 of 264 total aligned reads displayed.

ATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACATAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAA  >  NC_000913/2932125‑2932304
                                                                                          |                                                                                         
aTTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACaa                                                                                         <  1:3848191/93‑1 (MQ=255)
aTTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACaa                                                                                         >  1:5823491/1‑93 (MQ=255)
aTTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACaa                                                                                         >  2:2164176/1‑93 (MQ=255)
 tttGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAAc                                                                                        >  1:5218302/1‑93 (MQ=255)
 tttGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAAc                                                                                        >  2:2157270/1‑93 (MQ=255)
 tttGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAAc                                                                                        <  1:2572926/93‑1 (MQ=255)
    gAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGa                                                                                     <  2:4656785/93‑1 (MQ=255)
    gAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGa                                                                                     >  1:675167/1‑93 (MQ=255)
     aaaaTGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGAt                                                                                    >  1:2248179/1‑93 (MQ=255)
          gAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGt                                                                               <  2:95341/93‑1 (MQ=255)
          gAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGt                                                                               <  2:6300427/93‑1 (MQ=255)
          gAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGt                                                                               >  2:3606272/1‑93 (MQ=255)
             tCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCt                                                                            >  2:4238410/1‑93 (MQ=255)
             tCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCt                                                                            >  2:4035947/1‑93 (MQ=255)
               cATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTa                                                                          >  2:3415252/1‑93 (MQ=255)
               cATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTa                                                                          >  1:1793166/1‑93 (MQ=255)
                 tGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAg                                                                        >  2:3025954/1‑93 (MQ=255)
                 tGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAg                                                                        >  1:4234143/1‑93 (MQ=255)
                 tGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAg                                                                        <  2:5531638/93‑1 (MQ=255)
                  gAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGc                                                                       <  2:1147009/93‑1 (MQ=255)
                  gAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGc                                                                       <  2:5206469/93‑1 (MQ=255)
                  gAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGc                                                                       >  1:4359757/1‑93 (MQ=255)
                  gAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGc                                                                       <  1:3718031/93‑1 (MQ=255)
                   aGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCt                                                                      <  2:1288399/93‑1 (MQ=255)
                     ttCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTc                                                                    >  1:2438158/1‑93 (MQ=255)
                       cATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTg                                                                  >  1:3743882/1‑93 (MQ=255)
                        aTTTCAGACAGGCAAATATTCACTGATATGAAGCCCGCACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTATGTGCTTAAGCGTCTGa                                                                 >  1:1877697/1‑93 (MQ=255)
                        aTTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGa                                                                 >  1:3239811/1‑93 (MQ=255)
                        aTTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGa                                                                 >  2:3437471/1‑93 (MQ=255)
                         tttCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGaa                                                                <  1:4780683/93‑1 (MQ=255)
                           tCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGCAcc                                                              >  1:2810282/1‑93 (MQ=255)
                            cAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCt                                                             <  2:3221508/93‑1 (MQ=255)
                             aGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTa                                                            <  1:5358363/93‑1 (MQ=255)
                              gACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTaa                                                           >  2:5946937/1‑93 (MQ=255)
                               aCAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAag                                                          >  1:5662014/1‑93 (MQ=255)
                                cAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAaga                                                         >  2:3824522/1‑93 (MQ=255)
                                cAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTATGAACCTAaga                                                         <  2:1443761/93‑1 (MQ=255)
                                  ggCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAgg                                                       <  1:3317830/93‑1 (MQ=255)
                                   gCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGa                                                      <  2:4977525/93‑1 (MQ=255)
                                   gCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGa                                                      <  1:1272104/93‑1 (MQ=255)
                                   gCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTACTTAAGCTTCTGAACCTAAGAGGa                                                      <  1:5459701/93‑1 (MQ=255)
                                    cAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGAt                                                     >  1:5173701/1‑93 (MQ=255)
                                    cAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGAt                                                     >  1:1589009/1‑93 (MQ=255)
                                    cAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGAt                                                     >  2:3360127/1‑93 (MQ=255)
                                     aaaTATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATg                                                    >  2:2030245/1‑93 (MQ=255)
                                      aaTATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGc                                                   >  2:2378649/1‑93 (MQ=255)
                                      aaTATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGc                                                   <  1:4940136/93‑1 (MQ=255)
                                      aaTATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGc                                                   <  2:2715537/93‑1 (MQ=255)
                                       atatTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGCACCTAAGAGGATGCt                                                  >  2:6253300/1‑93 (MQ=255)
                                       atatTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCt                                                  >  2:4378370/1‑93 (MQ=255)
                                        tatTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTa                                                 <  1:5999865/93‑1 (MQ=255)
                                        tatTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTa                                                 >  2:1027748/1‑93 (MQ=255)
                                             aCTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGa                                            >  2:2576496/1‑93 (MQ=255)
                                              cTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACGACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGaa                                           >  2:3529385/1‑93 (MQ=255)
                                                 atatGAAGCCCGAGCTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAaca                                        <  1:317345/93‑1 (MQ=255)
                                                  tatGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAacac                                       >  2:1912028/1‑93 (MQ=255)
                                                   atGAAGCCCGAGCTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAAcaca                                      <  2:4602024/93‑1 (MQ=255)
                                                   atGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAAcaca                                      >  2:2813536/1‑93 (MQ=255)
                                                   atGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAAcaca                                      <  1:508368/93‑1 (MQ=255)
                                                    tGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACAt                                     >  1:6182230/1‑93 (MQ=255)
                                                    tGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACAt                                     >  2:4331942/1‑93 (MQ=255)
                                                     gAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATc                                    <  1:3349031/93‑1 (MQ=255)
                                                      aaGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCa                                   <  2:3665947/93‑1 (MQ=255)
                                                       aGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCaa                                  <  2:1520076/93‑1 (MQ=255)
                                                       aGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCaa                                  >  1:60872/1‑93 (MQ=255)
                                                        gCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAAt                                 <  2:4791874/93‑1 (MQ=255)
                                                        gCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAAt                                 <  1:3508365/93‑1 (MQ=255)
                                                        gCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAAt                                 >  2:2224065/1‑93 (MQ=255)
                                                        gCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAAt                                 <  1:1003970/93‑1 (MQ=255)
                                                         cccGAACTCGCTGTTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATa                                <  1:2645345/93‑1 (MQ=255)
                                                         cccGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATa                                >  1:1410867/1‑93 (MQ=255)
                                                          ccGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATAc                               <  2:5746715/93‑1 (MQ=255)
                                                          ccGAAATCGCTGGTTTTGCACTTTTGAAAACTCAAGCGATTTCGTGGTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACCTCAATAc                               >  2:6235489/1‑93 (MQ=255)
                                                           cGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACa                              <  2:5123669/93‑1 (MQ=255)
                                                              aCTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAAc                           <  1:1073394/93‑1 (MQ=255)
                                                              aCTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAAc                           <  2:6066444/93‑1 (MQ=255)
                                                              aCTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAAc                           <  2:2479030/93‑1 (MQ=255)
                                                                tCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTCTGGAGAACACATCAATACAAACGc                         >  2:5822958/1‑93 (MQ=255)
                                                                tCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGc                         >  1:1213965/1‑93 (MQ=255)
                                                                tCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGc                         <  1:729302/93‑1 (MQ=255)
                                                                tCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGc                         >  1:2825264/1‑93 (MQ=255)
                                                                tCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGc                         >  1:3153287/1‑93 (MQ=255)
                                                                ccGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGc                         <  2:840894/92‑1 (MQ=255)
                                                                  gCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCag                       >  2:5903979/1‑93 (MQ=255)
                                                                  gCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCag                       <  1:4423315/93‑1 (MQ=255)
                                                                     ggTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGt                    >  2:1664183/1‑93 (MQ=255)
                                                                      gTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGtt                   >  2:2656803/1‑93 (MQ=255)
                                                                      gTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGtt                   >  2:3178855/1‑93 (MQ=255)
                                                                      gTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAAAGGATGCTATGGGAAACACATCAATACAAACGCAGAGtt                   >  1:1552468/1‑93 (MQ=255)
                                                                        tttGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTAc                 <  1:5508756/93‑1 (MQ=255)
                                                                        tttGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTAc                 <  2:714718/93‑1 (MQ=255)
                                                                        tttGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTAc                 >  1:2365888/1‑93 (MQ=255)
                                                                         ttGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTAcc                <  1:2978178/93‑1 (MQ=255)
                                                                          tGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCg               <  1:3945085/93‑1 (MQ=255)
                                                                           gCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGt              <  1:5344176/93‑1 (MQ=255)
                                                                             aCTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTgg            >  1:4982738/1‑92 (MQ=255)
                                                                             aCTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGc            <  2:1776437/93‑1 (MQ=255)
                                                                             aCTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGc            >  2:2545216/1‑93 (MQ=255)
                                                                                     aaaCACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATa    <  1:2564182/93‑1 (MQ=255)
                                                                                      aaCACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATaa   >  1:191441/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACATAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAA  >  NC_000913/2932125‑2932304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACATAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAAGAT  >  NC_000913/2932122‑2932307
                                                                                             |                                                                                            
TTTATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACAC                                                                                              <  SRR4302533.5306796/94‑1 (MQ=60)
TTTATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACAC                                                                                              <  SRR4302533.387357/94‑1 (MQ=60)
TTTATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACAC                                                                                              >  SRR4302533.284060/1‑94 (MQ=60)
TTTATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCACGAACTCGCTGGTTTTGCACTTTTGAAAACAC                                                                                              <  SRR4302533.5855887/94‑1 (MQ=60)
  TATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAA                                                                                            >  SRR4302533.4819190/1‑94 (MQ=60)
  TATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAA                                                                                            >  SRR4302533.5858666/1‑94 (MQ=60)
   ATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAAC                                                                                           >  SRR4302533.576169/1‑94 (MQ=60)
   ATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAAC                                                                                           >  SRR4302533.5249712/1‑94 (MQ=60)
   ATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAAC                                                                                           <  SRR4302533.3871690/94‑1 (MQ=60)
    TTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACC                                                                                          <  SRR4302533.2588754/94‑1 (MQ=60)
    TTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACC                                                                                          <  SRR4302533.5089211/94‑1 (MQ=60)
     TTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCG                                                                                         <  SRR4302533.4136031/94‑1 (MQ=60)
     TTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCG                                                                                         <  SRR4302533.5467738/94‑1 (MQ=60)
      TGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGA                                                                                        >  SRR4302533.679155/1‑94 (MQ=60)
       GAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGAT                                                                                       >  SRR4302533.2262072/1‑94 (MQ=60)
        AAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATT                                                                                      >  SRR4302533.6216166/1‑94 (MQ=60)
          AATGAATCCATGAGTTGATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTAC                                                                                    <  SRR4302533.1524318/94‑1 (MQ=60)
           ATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACG                                                                                   <  SRR4302533.696154/94‑1 (MQ=60)
           ATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACG                                                                                   >  SRR4302533.2829072/1‑94 (MQ=60)
             GAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTG                                                                                 >  SRR4302533.6321987/1‑94 (MQ=60)
               ATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCT                                                                               <  SRR4302533.2636719/94‑1 (MQ=60)
                TCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTT                                                                              <  SRR4302533.2762596/94‑1 (MQ=60)
                 CCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTA                                                                             >  SRR4302533.1804076/1‑94 (MQ=60)
                  CATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAA                                                                            <  SRR4302533.3741141/94‑1 (MQ=60)
                   ATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAG                                                                           >  SRR4302533.4259731/1‑94 (MQ=60)
                    TGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGC                                                                          >  SRR4302533.4386075/1‑94 (MQ=60)
                    TGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGC                                                                          <  SRR4302533.4935850/94‑1 (MQ=60)
                     GAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCT                                                                         <  SRR4302533.3912436/94‑1 (MQ=60)
                     GAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCT                                                                         <  SRR4302533.3740850/94‑1 (MQ=60)
                      AGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACAGAACCGATTACGTGCTTAAGCTT                                                                        >  SRR4302533.2655993/1‑94 (MQ=60)
                      AGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTT                                                                        <  SRR4302533.5162933/94‑1 (MQ=60)
                      AGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTT                                                                        <  SRR4302533.551607/94‑1 (MQ=60)
                       GTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTC                                                                       >  SRR4302533.2453213/1‑94 (MQ=60)
                       GTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTC                                                                       >  SRR4302533.3499614/1‑94 (MQ=60)
                       GTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTC                                                                       <  SRR4302533.3297231/94‑1 (MQ=60)
                         TCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTG                                                                     >  SRR4302533.3766842/1‑94 (MQ=60)
                          CATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGCACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTATGTGCTTAAGCGTCTGA                                                                    >  SRR4302533.1889142/1‑94 (MQ=60)
                          CATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGA                                                                    <  SRR4302533.1853304/94‑1 (MQ=60)
                          CATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGA                                                                    >  SRR4302533.3259776/1‑94 (MQ=60)
                            TTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAAC                                                                  <  SRR4302533.3519072/94‑1 (MQ=60)
                            TTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAAC                                                                  <  SRR4302533.4809648/94‑1 (MQ=60)
                             TTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGCACC                                                                 >  SRR4302533.2827576/1‑94 (MQ=60)
                               CAGTCAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGGACCTA                                                               >  SRR4302533.3824108/1‑94 (MQ=60)
                                AGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAA                                                              <  SRR4302533.5390529/94‑1 (MQ=60)
                                 GACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAG                                                             >  SRR4302533.5696224/1‑94 (MQ=60)
                                 GACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAG                                                             <  SRR4302533.1841243/94‑1 (MQ=60)
                                  ACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGA                                                            >  SRR4302533.3728437/1‑94 (MQ=60)
                                   CAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAG                                                           <  SRR4302533.4279209/94‑1 (MQ=60)
                                   CAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAG                                                           <  SRR4302533.3339819/94‑1 (MQ=60)
                                    AGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGG                                                          <  SRR4302533.1909167/94‑1 (MQ=60)
                                     GGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGA                                                         <  SRR4302533.1126999/94‑1 (MQ=60)
                                     GGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGA                                                         <  SRR4302533.3338323/94‑1 (MQ=60)
                                      GCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGAT                                                        >  SRR4302533.5204956/1‑94 (MQ=60)
                                      GCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGAT                                                        >  SRR4302533.1518355/1‑94 (MQ=60)
                                      GCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGAT                                                        >  SRR4302533.1598618/1‑94 (MQ=60)
                                      GCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGAT                                                        <  SRR4302533.1279713/94‑1 (MQ=60)
                                      GCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTACTTAAGCTTCTGAACCTAAGAGGAT                                                        <  SRR4302533.5492595/94‑1 (MQ=60)
                                       CAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATG                                                       <  SRR4302533.2538728/94‑1 (MQ=60)
                                         AATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCT                                                     <  SRR4302533.4970043/94‑1 (MQ=60)
                                          ATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTA                                                    >  SRR4302533.3191250/1‑94 (MQ=60)
                                           TATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTAT                                                   <  SRR4302533.6036209/94‑1 (MQ=60)
                                            ATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATG                                                  <  SRR4302533.1337530/94‑1 (MQ=60)
                                             TTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGG                                                 <  SRR4302533.2336054/94‑1 (MQ=60)
                                             TTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGG                                                 >  SRR4302533.5371655/1‑94 (MQ=60)
                                                 CTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAA                                             >  SRR4302533.4982915/1‑94 (MQ=60)
                                                 CTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAA                                             >  SRR4302533.5519266/1‑94 (MQ=60)
                                                   GATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACA                                           >  SRR4302533.3193838/1‑94 (MQ=60)
                                                   GATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACA                                           <  SRR4302533.5415155/94‑1 (MQ=60)
                                                    ATATGAAGCCCGAGCTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACAC                                          <  SRR4302533.319288/94‑1 (MQ=60)
                                                    ATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACAC                                          >  SRR4302533.1714026/1‑94 (MQ=60)
                                                    ATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACAC                                          >  SRR4302533.885026/1‑94 (MQ=60)
                                                      ATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACAT                                        >  SRR4302533.6268375/1‑94 (MQ=60)
                                                      ATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACAT                                        <  SRR4302533.511386/94‑1 (MQ=60)
                                                      ATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACAT                                        >  SRR4302533.6219353/1‑94 (MQ=60)
                                                       TGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATC                                       <  SRR4302533.238564/94‑1 (MQ=60)
                                                        GAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCA                                      <  SRR4302533.3369722/94‑1 (MQ=60)
                                                        GAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCA                                      >  SRR4302533.1081756/1‑94 (MQ=60)
                                                         AAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAA                                     >  SRR4302533.5181850/1‑94 (MQ=60)
                                                         AAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAA                                     >  SRR4302533.61271/1‑94 (MQ=60)
                                                           GCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATA                                   <  SRR4302533.3529997/94‑1 (MQ=60)
                                                           GCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATA                                   <  SRR4302533.1009840/94‑1 (MQ=60)
                                                           GCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATA                                   >  SRR4302533.1419397/1‑94 (MQ=60)
                                                           GCCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATA                                   <  SRR4302533.3614885/94‑1 (MQ=60)
                                                            CCCGAACTCGCTGTTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATAC                                  <  SRR4302533.2661600/94‑1 (MQ=60)
                                                            CCCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATAC                                  >  SRR4302533.6028797/1‑94 (MQ=60)
                                                             CCGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACA                                 <  SRR4302533.3778076/94‑1 (MQ=60)
                                                              CGAACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAA                                >  SRR4302533.2303861/1‑94 (MQ=60)
                                                                ctgtgtttttttgtcattTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAAC                              <  SRR4302533.4711189/76‑1 (MQ=60)
                                                                AACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAAC                              >  SRR4302533.5387828/1‑94 (MQ=60)
                                                                AACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAAC                              >  SRR4302533.3021172/1‑94 (MQ=60)
                                                                AACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAAC                              <  SRR4302533.5624983/94‑1 (MQ=60)
                                                                 ACTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACG                             <  SRR4302533.1079722/94‑1 (MQ=60)
                                                                  CTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGC                            >  SRR4302533.2842651/1‑94 (MQ=60)
                                                                  CTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGC                            >  SRR4302533.3172671/1‑94 (MQ=60)
                                                                  CTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGC                            <  SRR4302533.3258257/94‑1 (MQ=60)
                                                                  CTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGC                            >  SRR4302533.1221260/1‑94 (MQ=60)
                                                                  CTCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGC                            >  SRR4302533.2755422/1‑94 (MQ=60)
                                                                   TCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCA                           >  SRR4302533.2851375/1‑94 (MQ=60)
                                                                   TCGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCA                           <  SRR4302533.733605/94‑1 (MQ=60)
                                                                    CGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAG                          >  SRR4302533.2526857/1‑94 (MQ=60)
                                                                    CGCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAG                          <  SRR4302533.2896201/94‑1 (MQ=60)
                                                                     GCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGA                         <  SRR4302533.94446/94‑1 (MQ=60)
                                                                     GCTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGA                         <  SRR4302533.4450056/94‑1 (MQ=60)
                                                                      CTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAG                        >  SRR4302533.194490/1‑94 (MQ=60)
                                                                      CTGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAG                        >  SRR4302533.1387717/1‑94 (MQ=60)
                                                                       TGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGT                       >  SRR4302533.2053579/1‑94 (MQ=60)
                                                                       TGGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGT                       >  SRR4302533.4352076/1‑94 (MQ=60)
                                                                        GGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTT                      >  SRR4302533.4564941/1‑94 (MQ=60)
                                                                        GGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTT                      >  SRR4302533.4252436/1‑94 (MQ=60)
                                                                        GGTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAAAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTT                      >  SRR4302533.1561815/1‑94 (MQ=60)
                                                                         GTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTA                     <  SRR4302533.530458/94‑1 (MQ=60)
                                                                         GTTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTA                     <  SRR4302533.4433590/94‑1 (MQ=60)
                                                                          TTTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTAC                    >  SRR4302533.2380523/1‑94 (MQ=60)
                                                                           TTTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACC                   <  SRR4302533.5542011/94‑1 (MQ=60)
                                                                            TTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCG                  >  SRR4302533.5216450/1‑94 (MQ=60)
                                                                            TTGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCG                  <  SRR4302533.2996398/94‑1 (MQ=60)
                                                                             TGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGT                 <  SRR4302533.1240296/94‑1 (MQ=60)
                                                                             TGCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGT                 <  SRR4302533.3969147/94‑1 (MQ=60)
                                                                              GCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTG                <  SRR4302533.5376225/94‑1 (MQ=60)
                                                                              GCACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTG                >  SRR4302533.51026/1‑94 (MQ=60)
                                                                               CACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGG               >  SRR4302533.5012950/1‑94 (MQ=60)
                                                                                ACTTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCG              >  SRR4302533.5771191/1‑94 (MQ=60)
                                                                                  TTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGT            >  SRR4302533.1700317/1‑94 (MQ=60)
                                                                                  TTTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGT            >  SRR4302533.4545375/1‑94 (MQ=60)
                                                                                   TTTGAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTA           <  SRR4302533.5866478/94‑1 (MQ=60)
                                                                                      GAAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGAT        <  SRR4302533.3283528/94‑1 (MQ=60)
                                                                                       AAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATA       <  SRR4302533.2584918/94‑1 (MQ=60)
                                                                                       AAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATA       <  SRR4302533.6187741/94‑1 (MQ=60)
                                                                                       AAAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATA       >  SRR4302533.1053559/1‑94 (MQ=60)
                                                                                        AAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAATCGCAGAGTTACCGTGCGGTAGATAA      <  SRR4302533.3114360/94‑1 (MQ=60)
                                                                                        AAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAA      <  SRR4302533.2579963/94‑1 (MQ=60)
                                                                                        AAACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAA      >  SRR4302533.192643/1‑94 (MQ=60)
                                                                                          ACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAAG    <  SRR4302533.6046207/94‑1 (MQ=60)
                                                                                          ACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAAG    >  SRR4302533.3162734/1‑94 (MQ=60)
                                                                                          ACACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAAG    <  SRR4302533.1581326/94‑1 (MQ=60)
                                                                                           CACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAAGA   <  SRR4302533.5591824/94‑1 (MQ=60)
                                                                                            ACAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAAGAT  <  SRR4302533.1257109/94‑1 (MQ=60)
                                                                                             |                                                                                            
TTTATTTGAAAATGAATCCATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACATAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTATGGGAAACACATCAATACAAACGCAGAGTTACCGTGCGGTAGATAAAGAT  >  NC_000913/2932122‑2932307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑