Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,965,229 A→G I400V (ATT→GTT)  rho → transcription termination factor Rho

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,965,2290AG100.0% 882.0 / NA 269I400V (ATT→GTT) rhotranscription termination factor Rho
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (153/116);  total (153/116)

Only 100 of 270 total aligned reads displayed.

CTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGT  >  NC_000913/3965139‑3965318
                                                                                          |                                                                                         
ctgctCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGtt                                                                                         >  2:6262341/1‑93 (MQ=255)
 tgctCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCAGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTta                                                                                        >  1:4553997/1‑93 (MQ=255)
    tCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTtaata                                                                                     <  2:1878483/93‑1 (MQ=255)
    tCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTtaata                                                                                     <  1:539737/93‑1 (MQ=255)
    tCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTtaata                                                                                     <  1:3355697/93‑1 (MQ=255)
       cGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAAc                                                                                  >  2:2403562/1‑93 (MQ=255)
        gACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACt                                                                                 >  1:4477907/1‑93 (MQ=255)
        gACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACt                                                                                 <  2:5552141/93‑1 (MQ=255)
          cTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTgg                                                                               >  1:3092566/1‑93 (MQ=255)
           tCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGc                                                                              >  1:887286/1‑93 (MQ=255)
            cAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCa                                                                             >  2:4205916/1‑93 (MQ=255)
             aGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCaa                                                                            >  2:3871245/1‑93 (MQ=255)
             aGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCaa                                                                            >  1:2160247/1‑93 (MQ=255)
              ggAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGTTGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAAt                                                                           >  2:5075542/1‑93 (MQ=255)
              ggAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAAt                                                                           <  1:1013071/93‑1 (MQ=255)
              ggAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAAt                                                                           >  2:3584806/1‑93 (MQ=255)
              ggAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAAt                                                                           >  1:1945838/1‑93 (MQ=255)
                 agaaCTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATgac                                                                        >  1:2780118/1‑93 (MQ=255)
                 agaaCTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATgac                                                                        >  2:4385330/1‑93 (MQ=255)
                  gaaCTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATgacc                                                                       <  2:2792910/93‑1 (MQ=255)
                  gaaCTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATgacc                                                                       >  2:2927641/1‑93 (MQ=255)
                    aCTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATgaccaa                                                                     <  1:2697800/93‑1 (MQ=255)
                      tGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATgaccaaga                                                                   >  2:1813577/1‑93 (MQ=255)
                          gAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATgaccaagaccaa                                                               >  1:1851973/1‑93 (MQ=255)
                           aaaaTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAAt                                                              <  2:5104428/93‑1 (MQ=255)
                           aaaaTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAAt                                                              >  2:1747422/1‑93 (MQ=255)
                           aaaaTGTGGATCCTGCGCAAAATAATTCACCCGATGGGCGAAATCGATGCAATGAAATTCCTCGTTAATAAACTGGCAATgacaaagaccaag                                                              >  1:4193156/1‑92 (MQ=255)
                            aaaTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATg                                                             >  2:1471041/1‑93 (MQ=255)
                            aaaTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATg                                                             <  1:3546246/93‑1 (MQ=255)
                            aaaTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATg                                                             <  2:1276892/93‑1 (MQ=255)
                             aaTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGa                                                            <  1:3779779/93‑1 (MQ=255)
                             aaTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGa                                                            >  1:2407531/1‑93 (MQ=255)
                              aTGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGAc                                                           <  2:4356650/93‑1 (MQ=255)
                                gtgGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGa                                                         <  1:6295467/93‑1 (MQ=255)
                                gtgGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGa                                                         <  2:1646331/93‑1 (MQ=255)
                                 tgGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGAt                                                        >  1:6106601/1‑93 (MQ=255)
                                  ggATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATTGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGAtt                                                       >  2:1830765/1‑93 (MQ=255)
                                  ggATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGAtt                                                       <  2:351283/93‑1 (MQ=255)
                                      ccTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATttctt                                                   >  2:249042/1‑93 (MQ=255)
                                      ccTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATttctt                                                   >  2:1364169/1‑93 (MQ=255)
                                        tGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCg                                                 <  2:5826480/93‑1 (MQ=255)
                                         gcgcAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGa                                                >  1:5592106/1‑93 (MQ=255)
                                         gcgcAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGa                                                >  2:4563066/1‑93 (MQ=255)
                                          cgcAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGaa                                               <  1:2335839/93‑1 (MQ=255)
                                           gcAAAATCATTCGCCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGaaa                                              <  1:4004421/93‑1 (MQ=255)
                                           gcAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGaca                                              <  2:6209138/93‑3 (MQ=255)
                                            cAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAat                                             <  1:505848/93‑1 (MQ=255)
                                             aaaaTCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAatg                                            <  2:4070594/93‑1 (MQ=255)
                                             aaaaTCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAatg                                            >  1:3161757/1‑93 (MQ=255)
                                             aaaaTCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAatg                                            >  2:3763841/1‑93 (MQ=255)
                                              aaaTCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAatga                                           <  2:2233818/93‑1 (MQ=255)
                                              aaaTCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAatga                                           >  1:4232306/1‑93 (MQ=255)
                                               aaTCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCATTGACGATTTCTTCGAAatgat                                          <  2:4007121/93‑1 (MQ=255)
                                                  cATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGaa                                       >  2:5711724/1‑93 (MQ=255)
                                                  cATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGaa                                       <  1:2366807/93‑1 (MQ=255)
                                                  cATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGaa                                       <  2:5157321/93‑1 (MQ=255)
                                                  cATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGaa                                       >  1:5546499/1‑93 (MQ=255)
                                                   aTTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGaaa                                      <  1:2241769/93‑1 (MQ=255)
                                                   aTTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGaaa                                      <  1:5243968/93‑1 (MQ=255)
                                                    ttCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAAc                                     >  2:2859076/1‑93 (MQ=255)
                                                    ttCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAAc                                     <  1:5178735/93‑1 (MQ=255)
                                                    ttCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAAc                                     >  2:6163351/1‑93 (MQ=255)
                                                    ttCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAAc                                     <  1:1691713/93‑1 (MQ=255)
                                                       aCCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCt                                  >  2:4826258/1‑93 (MQ=255)
                                                       aCCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCt                                  >  1:2979912/1‑93 (MQ=255)
                                                        cccGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTc                                 >  1:1331304/1‑93 (MQ=255)
                                                        cccGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTc                                 >  2:3213383/1‑93 (MQ=255)
                                                         ccGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCa                                >  2:2697200/1‑93 (MQ=255)
                                                          cGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCAt                               >  2:4442113/1‑93 (MQ=255)
                                                          cGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCAt                               >  2:1132923/1‑93 (MQ=255)
                                                          cGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCAt                               >  2:5620201/1‑93 (MQ=255)
                                                           gATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATa                              >  2:3130866/1‑93 (MQ=255)
                                                           gATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATa                              >  2:3255723/1‑93 (MQ=255)
                                                            aTGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATaa                             >  1:1165419/1‑93 (MQ=255)
                                                             tGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATaaa                            <  2:5394991/93‑1 (MQ=255)
                                                             tGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATaaa                            >  1:983971/1‑93 (MQ=255)
                                                                gCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAAttt                         <  1:1121903/93‑1 (MQ=255)
                                                                   aaaTCGATGCAATGGGATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTc                      >  2:5990770/1‑93 (MQ=255)
                                                                   aaaTCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTc                      <  1:718016/93‑1 (MQ=255)
                                                                    aaTCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCt                     >  2:4479355/1‑93 (MQ=255)
                                                                     aTCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCtt                    <  2:693526/93‑1 (MQ=255)
                                                                       cGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTAt                  >  1:1415071/1‑93 (MQ=255)
                                                                        gATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATg                 <  1:4646512/93‑1 (MQ=255)
                                                                         aTGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGc                >  2:1952125/1‑93 (MQ=255)
                                                                         aTGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGc                >  1:482307/1‑93 (MQ=255)
                                                                          tGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGcc               >  1:3676666/1‑93 (MQ=255)
                                                                           gCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCa              <  1:5438722/93‑1 (MQ=255)
                                                                            cAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCaa             >  1:2799498/1‑93 (MQ=255)
                                                                             aaTGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCaaa            <  1:1369599/93‑1 (MQ=255)
                                                                              aTGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCaaaa           >  2:3009757/1‑93 (MQ=255)
                                                                              aTGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCaaaa           <  2:5854971/93‑1 (MQ=255)
                                                                               tGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCaaaaa          >  2:4610322/1‑93 (MQ=255)
                                                                                ggAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAAc         >  1:5779901/1‑93 (MQ=255)
                                                                                ggAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAAc         >  1:3541468/1‑93 (MQ=255)
                                                                                 gAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACg        >  2:2009217/1‑93 (MQ=255)
                                                                                   aTTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGcc      >  1:4713243/1‑93 (MQ=255)
                                                                                   aTTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGcc      <  1:3260884/93‑1 (MQ=255)
                                                                                    ttCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCa     <  2:3038431/93‑1 (MQ=255)
                                                                                     tCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCAc    <  2:3439541/93‑1 (MQ=255)
                                                                                       cTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACgt  >  1:1519134/1‑93 (MQ=255)
                                                                                          |                                                                                         
CTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGT  >  NC_000913/3965139‑3965318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAGCTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTT  >  NC_000913/3965136‑3965322
                                                                                             |                                                                                             
GAGCTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCG                                                                                               <  SRR4302533.4516023/94‑1 (MQ=60)
GAGCTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCG                                                                                               <  SRR4302533.1513312/94‑1 (MQ=60)
 AGCTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGT                                                                                              <  SRR4302533.3653496/94‑1 (MQ=60)
 AGCTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGT                                                                                              >  SRR4302533.2213305/1‑94 (MQ=60)
  GCTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTT                                                                                             <  SRR4302533.4427808/94‑1 (MQ=60)
   CTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTA                                                                                            >  SRR4302533.4243264/1‑94 (MQ=60)
   CTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCAGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTA                                                                                            >  SRR4302533.4581616/1‑94 (MQ=60)
    TGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAA                                                                                           >  SRR4302533.694052/1‑94 (MQ=60)
      CTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATA                                                                                         >  SRR4302533.374941/1‑94 (MQ=60)
       TCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAA                                                                                        <  SRR4302533.3376432/94‑1 (MQ=60)
       TCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAA                                                                                        <  SRR4302533.542946/94‑1 (MQ=60)
       TCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAA                                                                                        <  SRR4302533.6319127/94‑1 (MQ=60)
       TCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAA                                                                                        <  SRR4302533.1408994/94‑1 (MQ=60)
        CACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAA                                                                                       <  SRR4302533.2750114/94‑1 (MQ=60)
          CGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACT                                                                                     >  SRR4302533.4505002/1‑94 (MQ=60)
           GACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTG                                                                                    >  SRR4302533.5537514/1‑94 (MQ=60)
            ACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGG                                                                                   <  SRR4302533.2739460/94‑1 (MQ=60)
            ACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGG                                                                                   >  SRR4302533.3111580/1‑94 (MQ=60)
             CTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGC                                                                                  >  SRR4302533.892494/1‑94 (MQ=60)
             CTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGC                                                                                  <  SRR4302533.1934582/94‑1 (MQ=60)
               CAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAA                                                                                >  SRR4302533.2173545/1‑94 (MQ=60)
                AGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAAT                                                                               >  SRR4302533.1957702/1‑94 (MQ=60)
                 GGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATG                                                                              <  SRR4302533.1019002/94‑1 (MQ=60)
                   AAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGAC                                                                            <  SRR4302533.2322073/94‑1 (MQ=60)
                   AAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGAC                                                                            >  SRR4302533.2797195/1‑94 (MQ=60)
                   AAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGAC                                                                            >  SRR4302533.1910029/1‑94 (MQ=60)
                    AGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACC                                                                           <  SRR4302533.4611120/94‑1 (MQ=60)
                       ACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAG                                                                        >  SRR4302533.858606/1‑94 (MQ=60)
                       ACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAG                                                                        <  SRR4302533.2714332/94‑1 (MQ=60)
                        CTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGA                                                                       <  SRR4302533.5768355/94‑1 (MQ=60)
                        CTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGA                                                                       >  SRR4302533.5435860/1‑94 (MQ=60)
                        CTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGA                                                                       >  SRR4302533.3298071/1‑94 (MQ=60)
                         TGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGAC                                                                      <  SRR4302533.1478104/94‑1 (MQ=60)
                          GCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACC                                                                     >  SRR4302533.5691995/1‑94 (MQ=60)
                            AGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAA                                                                   >  SRR4302533.1144988/1‑94 (MQ=60)
                            AGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAA                                                                   >  SRR4302533.3100381/1‑94 (MQ=60)
                            AGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAA                                                                   >  SRR4302533.1863265/1‑94 (MQ=60)
                             GAAAATGTGGATCCTGCGCAAAATAATTCACCCGATGGGCGAAATCGATGCAATGAAATTCCTCGTTAATAAACTGGCAATGACAAAGACCAAG                                                                  >  SRR4302533.4218534/1‑94 (MQ=60)
                               AAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGA                                                                <  SRR4302533.3568104/94‑1 (MQ=60)
                               AAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGA                                                                >  SRR4302533.2422401/1‑94 (MQ=60)
                                AATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGAC                                                               <  SRR4302533.3802934/94‑1 (MQ=60)
                                  TGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGA                                                             <  SRR4302533.5202259/94‑1 (MQ=60)
                                   GTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGAT                                                            <  SRR4302533.6333010/94‑1 (MQ=60)
                                   GTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGAT                                                            >  SRR4302533.6143472/1‑94 (MQ=60)
                                    TGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATT                                                           >  SRR4302533.4085430/1‑94 (MQ=60)
                                        TCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTT                                                       >  SRR4302533.516563/1‑94 (MQ=60)
                                          CTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCG                                                     <  SRR4302533.407969/94‑1 (MQ=60)
                                          CTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCG                                                     <  SRR4302533.2358734/94‑1 (MQ=60)
                                          CTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCG                                                     <  SRR4302533.5495823/94‑1 (MQ=60)
                                          CTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCG                                                     >  SRR4302533.4713382/1‑94 (MQ=60)
                                          CTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACAAAGACCAATGACGATTTCTTCG                                                     >  SRR4302533.1435324/1‑94 (MQ=60)
                                           TGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGA                                                    >  SRR4302533.5625887/1‑94 (MQ=60)
                                           TGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGA                                                    >  SRR4302533.1819206/1‑94 (MQ=60)
                                             CGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAA                                                  <  SRR4302533.2350297/94‑1 (MQ=60)
                                              GCAAAATCATTCGCCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAAT                                                 <  SRR4302533.4028799/94‑1 (MQ=60)
                                               CAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATG                                                <  SRR4302533.508851/94‑1 (MQ=60)
                                               CAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATG                                                <  SRR4302533.6056017/94‑1 (MQ=60)
                                               CAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATG                                                >  SRR4302533.3181215/1‑94 (MQ=60)
                                                AAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGA                                               >  SRR4302533.4257887/1‑94 (MQ=60)
                                                 AAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGAT                                              >  SRR4302533.3765528/1‑94 (MQ=60)
                                                 AAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGAT                                              >  SRR4302533.3623594/1‑94 (MQ=60)
                                                 AAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGAT                                              <  SRR4302533.3975907/94‑1 (MQ=60)
                                                 AAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTAGAAATGAT                                              >  SRR4302533.3603743/1‑94 (MQ=60)
                                                   ATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGA                                            >  SRR4302533.4045735/1‑94 (MQ=60)
                                                   ATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGA                                            >  SRR4302533.2325450/1‑94 (MQ=60)
                                                   ATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGA                                            >  SRR4302533.1612178/1‑94 (MQ=60)
                                                    TCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAA                                           >  SRR4302533.5579998/1‑94 (MQ=60)
                                                    TCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAA                                           <  SRR4302533.769892/94‑1 (MQ=60)
                                                     CATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAA                                          <  SRR4302533.2381447/94‑1 (MQ=60)
                                                      ATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAAC                                         <  SRR4302533.5275487/94‑1 (MQ=60)
                                                      ATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAAC                                         <  SRR4302533.2255625/94‑1 (MQ=60)
                                                      ATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAAC                                         <  SRR4302533.721471/94‑1 (MQ=60)
                                                       TTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACG                                        <  SRR4302533.5210011/94‑1 (MQ=60)
                                                       TTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACG                                        <  SRR4302533.3436332/94‑1 (MQ=60)
                                                       TTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACG                                        <  SRR4302533.1701958/94‑1 (MQ=60)
                                                        TCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGC                                       >  SRR4302533.1362727/1‑94 (MQ=60)
                                                        TCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGC                                       <  SRR4302533.312991/94‑1 (MQ=60)
                                                        TCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGC                                       >  SRR4302533.558597/1‑94 (MQ=60)
                                                         CACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCT                                      >  SRR4302533.2998146/1‑94 (MQ=60)
                                                          ACCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTC                                     >  SRR4302533.1339290/1‑94 (MQ=60)
                                                           CCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCA                                    >  SRR4302533.4715626/1‑94 (MQ=60)
                                                           CCCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCA                                    >  SRR4302533.2458461/1‑94 (MQ=60)
                                                            CCGATGGGCGAAATCTATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCAT                                   <  SRR4302533.2994372/94‑1 (MQ=60)
                                                            CCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCAT                                   <  SRR4302533.344972/94‑1 (MQ=60)
                                                            CCGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCAT                                   >  SRR4302533.1146738/1‑94 (MQ=60)
                                                             CGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATA                                  >  SRR4302533.1201171/1‑94 (MQ=60)
                                                             CGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATA                                  >  SRR4302533.3280922/1‑94 (MQ=60)
                                                             CGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATA                                  >  SRR4302533.3014679/1‑94 (MQ=60)
                                                             CGATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATA                                  >  SRR4302533.2107721/1‑94 (MQ=60)
                                                              GATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAA                                 >  SRR4302533.1172407/1‑94 (MQ=60)
                                                              GATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAA                                 <  SRR4302533.2374037/94‑1 (MQ=60)
                                                               ATGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAA                                >  SRR4302533.989739/1‑94 (MQ=60)
                                                                TGGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAAT                               <  SRR4302533.1398787/94‑1 (MQ=60)
                                                                 GGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGATACGCTCATAAATT                              >  SRR4302533.3563393/1‑94 (MQ=60)
                                                                 GGGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATT                              <  SRR4302533.2386373/94‑1 (MQ=60)
                                                                  GGCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTT                             <  SRR4302533.5459232/94‑1 (MQ=60)
                                                                   GCGAAATCGATGTAATGGAATTCCTCGTTAATAAACTGCCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTG                            <  SRR4302533.4503403/94‑1 (MQ=60)
                                                                   GCGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTG                            <  SRR4302533.1128563/94‑1 (MQ=60)
                                                                    CGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGT                           >  SRR4302533.103727/1‑94 (MQ=60)
                                                                    CGAAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGT                           >  SRR4302533.4933645/1‑94 (MQ=60)
                                                                      AAATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCT                         <  SRR4302533.722254/94‑1 (MQ=60)
                                                                        ATCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTA                       <  SRR4302533.4653728/94‑1 (MQ=60)
                                                                         TCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTAT                      >  SRR4302533.1423632/1‑94 (MQ=60)
                                                                         TCGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTAT                      <  SRR4302533.5286149/94‑1 (MQ=60)
                                                                          CGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATG                     >  SRR4302533.2237990/1‑94 (MQ=60)
                                                                          CGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATG                     >  SRR4302533.4408415/1‑94 (MQ=60)
                                                                          CGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATG                     >  SRR4302533.2511959/1‑94 (MQ=60)
                                                                          CGATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATG                     >  SRR4302533.2812068/1‑94 (MQ=60)
                                                                           GATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGC                    <  SRR4302533.4674670/94‑1 (MQ=60)
                                                                           GATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGC                    >  SRR4302533.485189/1‑94 (MQ=60)
                                                                           GATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGC                    <  SRR4302533.334933/94‑1 (MQ=60)
                                                                            ATGCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCC                   >  SRR4302533.3699262/1‑94 (MQ=60)
                                                                              GCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAA                 <  SRR4302533.5471478/94‑1 (MQ=60)
                                                                              GCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAA                 >  SRR4302533.2816717/1‑94 (MQ=60)
                                                                              GCAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAA                 <  SRR4302533.1703742/94‑1 (MQ=60)
                                                                               CAATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAA                <  SRR4302533.4575832/94‑1 (MQ=60)
                                                                                AATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAA               <  SRR4302533.1377830/94‑1 (MQ=60)
                                                                                AATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAA               >  SRR4302533.3119620/1‑94 (MQ=60)
                                                                                 ATGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAA              >  SRR4302533.2969636/1‑94 (MQ=60)
                                                                                  TGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAAC             >  SRR4302533.5814809/1‑94 (MQ=60)
                                                                                  TGGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAAC             >  SRR4302533.3563289/1‑94 (MQ=60)
                                                                                   GGAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACG            <  SRR4302533.5313786/94‑1 (MQ=60)
                                                                                    GAATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGC           >  SRR4302533.1992865/1‑94 (MQ=60)
                                                                                     AATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCC          >  SRR4302533.4741807/1‑94 (MQ=60)
                                                                                      ATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCA         <  SRR4302533.3280999/94‑1 (MQ=60)
                                                                                      ATTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCA         <  SRR4302533.4820592/94‑1 (MQ=60)
                                                                                       TTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCAC        <  SRR4302533.912620/94‑1 (MQ=60)
                                                                                       TTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCAC        <  SRR4302533.5952855/94‑1 (MQ=60)
                                                                                       TTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCAC        <  SRR4302533.5227750/94‑1 (MQ=60)
                                                                                       TTCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCAC        <  SRR4302533.1214278/94‑1 (MQ=60)
                                                                                        TCCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACG       <  SRR4302533.4235645/94‑1 (MQ=60)
                                                                                         CCTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGT      >  SRR4302533.1528278/1‑94 (MQ=60)
                                                                                          CTCGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTG     <  SRR4302533.4922153/94‑1 (MQ=60)
                                                                                            CGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTT   <  SRR4302533.1381392/94‑1 (MQ=60)
                                                                                            CGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTT   >  SRR4302533.337030/1‑94 (MQ=60)
                                                                                            CGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTT   <  SRR4302533.356639/94‑1 (MQ=60)
                                                                                            CGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTT   >  SRR4302533.5992100/1‑94 (MQ=60)
                                                                                            CGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTT   <  SRR4302533.2807002/94‑1 (MQ=60)
                                                                                            CGTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGGT   >  SRR4302533.1784665/1‑94 (MQ=60)
                                                                                             GTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGCAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTT  >  SRR4302533.4467122/1‑94 (MQ=60)
                                                                                             GTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTT  <  SRR4302533.6239428/94‑1 (MQ=60)
                                                                                             GTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTT  <  SRR4302533.3445711/94‑1 (MQ=60)
                                                                                             GTTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTT  <  SRR4302533.1329318/94‑1 (MQ=60)
                                                                                             |                                                                                             
GAGCTGCTCACGACTCAGGAAGAACTGCAGAAAATGTGGATCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTT  >  NC_000913/3965136‑3965322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: