Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,974,008	C→T	A40V (GCG→GTG)	wzxE →	putative cytochrome

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,974,008	0	C	T	98.9%	598.8 / ‑5.7	176	A40V (GCG→GTG)	wzxE	putative cytochrome
Reads supporting (aligned to +/- strand): ref base C (2/0); new base T (88/84); total (91/85)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 188 total aligned reads displayed.

GGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACC  >  NC_000913/3973919‑3974097

ggcggcCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTggtggc                                                                                        <  2:3003957/93‑1 (MQ=255)

   ggcCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCaaa                                                                                     >  2:1841465/1‑93 (MQ=255)

    gcCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAAt                                                                                    >  2:1248487/1‑93 (MQ=255)

       aGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTc                                                                                 <  2:5234840/93‑1 (MQ=255)

         tACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCg                                                                               >  2:2045902/1‑93 (MQ=255)

         tACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCg                                                                               >  2:1947832/1‑93 (MQ=255)

          acacTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGc                                                                              >  1:3091157/1‑93 (MQ=255)

           cacTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGcc                                                                             >  1:4881969/1‑93 (MQ=255)

           cacTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGcc                                                                             <  2:4606389/93‑1 (MQ=255)

            acTTGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCa                                                                            >  1:66727/1‑93 (MQ=255)

            acTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCa                                                                            <  1:4077087/93‑1 (MQ=255)

             cTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAg                                                                           <  1:1639401/93‑1 (MQ=255)

              tGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGt                                                                          <  1:5984309/93‑1 (MQ=255)

                gTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCTGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTg                                                                        >  1:3461908/1‑93 (MQ=255)

                gTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTg                                                                        >  1:2211616/1‑93 (MQ=255)

                gTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTg                                                                        <  1:1296783/93‑1 (MQ=255)

                gTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTg                                                                        >  1:3138519/1‑93 (MQ=255)

                 tCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGa                                                                       >  2:211815/1‑93 (MQ=255)

                 tCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGa                                                                       <  1:4476868/93‑1 (MQ=255)

                  cAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGAt                                                                      >  1:4505949/1‑93 (MQ=255)

                   aaGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGAtt                                                                     >  1:4589034/1‑93 (MQ=255)

                   aaGATTGGTGCCGGGTTACTGGTCGGGAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGAtt                                                                     >  1:156312/1‑93 (MQ=255)

                     gATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTAc                                                                   >  2:2623316/1‑93 (MQ=255)

                      aTTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTAcc                                                                  <  1:6243366/93‑1 (MQ=255)

                       ttGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCg                                                                 >  2:1647922/1‑93 (MQ=255)

                        tGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGt                                                                <  2:3745859/93‑1 (MQ=255)

                        tGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGt                                                                <  2:3265266/93‑1 (MQ=255)

                          gTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGc                                                              <  2:5626267/93‑1 (MQ=255)

                             ccGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCg                                                           >  2:2202283/1‑93 (MQ=255)

                                ggTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTCCCGTGCTCGGCg                                                        <  2:297957/93‑1 (MQ=255)

                                 gTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCgg                                                       >  2:5989350/1‑92 (MQ=255)

                                 gTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGt                                                       >  1:3529304/1‑93 (MQ=255)

                                 gTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGt                                                       >  1:5279198/1‑93 (MQ=255)

                                 gTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGt                                                       >  2:630797/1‑93 (MQ=255)

                                  ttACTGGCCAGTAAGTTGCGGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTg                                                      <  1:1705091/93‑1 (MQ=255)

                                   tACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGc                                                     <  1:3398239/93‑1 (MQ=255)

                                   tACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGc                                                     >  2:5262229/1‑93 (MQ=255)

                                   tACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGGTGATTACCGTGCTCGGCGTGc                                                     >  2:3949166/1‑93 (MQ=255)

                                    aCTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCt                                                    >  1:2360419/1‑93 (MQ=255)

                                    aCTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCt                                                    <  1:223352/93‑1 (MQ=255)

                                    aCTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCt                                                    <  2:676396/93‑1 (MQ=255)

                                    aCTGGTCGGTAAGTTGCTGGCGGTCTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCt                                                    <  2:4239777/93‑1 (MQ=255)

                                     cTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCtt                                                   <  2:5076317/93‑1 (MQ=255)

                                       ggTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGc                                                 <  2:1518479/93‑1 (MQ=255)

                                        gTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGcc                                                >  1:1053805/1‑93 (MQ=255)

                                        gTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGcc                                                <  1:6091989/93‑1 (MQ=255)

                                        gTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGcc                                                >  1:5563281/1‑93 (MQ=255)

                                         tCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCg                                               >  2:5830151/1‑93 (MQ=255)

                                          cGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCgg                                              <  1:5353271/93‑1 (MQ=255)

                                           ggTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGGTTGGGCTGGTGGCAAATTTCCGGCAGTTGATTACCGTGCTCGGCGTGCTTGCCggg                                             >  2:4174282/1‑93 (MQ=255)

                                           ggTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCggg                                             >  1:856405/1‑93 (MQ=255)

                                           cgTAAGTTGCTCGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGTCAAATTTCCGCCAGTTGATTACCGTGCTCGGCCTGCTTAcccgc                                             <  2:4026420/92‑4 (MQ=255)

                                            gTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCgggg                                            >  1:1172528/1‑93 (MQ=255)

                                            gTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCgggg                                            >  2:439053/1‑93 (MQ=255)

                                            gTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGAAAATTTCCGCCAGTTGATTACCGTGATCGGCGTGCTTGCCgggg                                            >  1:3327211/1‑93 (MQ=255)

                                              aaGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCt                                          <  2:4324644/93‑1 (MQ=255)

                                               aGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTg                                         <  1:5127784/93‑1 (MQ=255)

                                               aGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTg                                         <  1:1388411/93‑1 (MQ=255)

                                                   gCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCTGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCAt                                     >  2:2797661/1‑93 (MQ=255)

                                                    gtGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATc                                    <  1:5687639/92‑1 (MQ=255)

                                                       gCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGGGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCttt                                 >  1:3469971/1‑93 (MQ=255)

                                                         ggTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTaa                               >  1:2978720/1‑93 (MQ=255)

                                                         ggTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTaa                               <  2:3181793/93‑1 (MQ=255)

                                                         ggTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTaa                               >  1:3349257/1‑93 (MQ=255)

                                                         ggTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTaa                               <  1:94636/93‑1 (MQ=255)

                                                         ggTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTaa                               >  1:3898182/1‑93 (MQ=255)

                                                          gtgtCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAAc                              <  1:742006/93‑1 (MQ=255)

                                                          gtgtCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAAc                              >  2:5572912/1‑93 (MQ=255)

                                                          gtgtCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAAc                              >  2:1630425/1‑93 (MQ=255)

                                                           tgtCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACg                             <  2:5814742/93‑1 (MQ=255)

                                                            gtCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACgg                            >  2:5818041/1‑93 (MQ=255)

                                                            gtCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACgg                            >  1:5157181/1‑93 (MQ=255)

                                                             tCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTGCGCCAGTTGATTACCGTGCTCGGCGTGCTTGTCGGGGCTTGCATCTTTAACggg                           >  1:164959/1‑92 (MQ=255)

                                                              cATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGgtg                          <  2:2489268/93‑1 (MQ=255)

                                                               aTTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAAAGgtgt                         >  2:2274716/1‑93 (MQ=255)

                                                                tttGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTa                        <  2:3870198/93‑1 (MQ=255)

                                                                tttGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTa                        >  2:5401026/1‑93 (MQ=255)

                                                                 ttGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTaa                       <  2:4665061/93‑1 (MQ=255)

                                                                  tGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAAc                      <  2:3524201/93‑1 (MQ=255)

                                                                  tGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAAc                      <  1:1878793/93‑1 (MQ=255)

                                                                   ggTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAAcc                     >  2:2927153/1‑93 (MQ=255)

                                                                    gTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTNTAACCa                    >  1:1496631/1‑93 (MQ=255)

                                                                         gcggGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATAc               >  1:3983299/1‑93 (MQ=255)

                                                                         gcggGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATAc               >  1:4392448/1‑93 (MQ=255)

                                                                          cggGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACg              >  2:2652817/1‑93 (MQ=255)

                                                                           ggggCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGt             <  1:4735777/93‑1 (MQ=255)

                                                                            gggCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGtt            <  1:293011/93‑1 (MQ=255)

                                                                            gggCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGtt            >  2:1003030/1‑93 (MQ=255)

                                                                            gggCTTGGGCTGGAGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGtt            <  2:5043779/93‑1 (MQ=255)

                                                                             ggCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTg           >  2:4894870/1‑93 (MQ=255)

                                                                              gCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGc          >  1:1030193/1‑93 (MQ=255)

                                                                                ttGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGccc        >  1:3678646/1‑93 (MQ=255)

                                                                                 tGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCa       <  1:2554063/93‑1 (MQ=255)

                                                                                  gggCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAg      <  2:1909769/93‑1 (MQ=255)

                                                                                  gggCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAg      >  1:1108638/1‑93 (MQ=255)

                                                                                   ggCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGt     <  2:6118175/93‑1 (MQ=255)

                                                                                     cTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTAc   <  1:2664112/93‑1 (MQ=255)

                                                                                      tggtggCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTAcc  >  2:1353692/1‑93 (MQ=255)

                                                                                      tggtggCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTAcc  >  1:472488/1‑93 (MQ=255)

                                                                                      tggtggCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTAcc  <  1:2725468/93‑1 (MQ=255)

GGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACC  >  NC_000913/3973919‑3974097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGACGGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCATGA  >  NC_000913/3973915‑3974101

GGACGGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGT                                                                                               <  SRR4302533.6130616/94‑1 (MQ=60)

  ACGGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGG                                                                                             <  SRR4302533.2228878/94‑1 (MQ=60)

  ACGGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGG                                                                                             <  SRR4302533.5418708/94‑1 (MQ=60)

  ACGGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGG                                                                                             <  SRR4302533.1417109/94‑1 (MQ=60)

    GGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCA                                                                                           >  SRR4302533.106945/1‑94 (MQ=60)

    GGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCA                                                                                           <  SRR4302533.1354869/94‑1 (MQ=60)

           AGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTGC                                                                                    >  SRR4302533.3944507/1‑94 (MQ=60)

           AGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCC                                                                                    <  SRR4302533.2844663/94‑1 (MQ=60)

             TACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGC                                                                                  >  SRR4302533.3110161/1‑94 (MQ=60)

              ACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCC                                                                                 >  SRR4302533.4911545/1‑94 (MQ=60)

               CACTTGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCA                                                                                >  SRR4302533.67162/1‑94 (MQ=60)

                ACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAG                                                                               <  SRR4302533.1545428/94‑1 (MQ=60)

                ACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAG                                                                               <  SRR4302533.4101905/94‑1 (MQ=60)

                 CTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGT                                                                              <  SRR4302533.1649327/94‑1 (MQ=60)

                  TGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCCAATTTCCGCCAGTT                                                                             >  SRR4302533.4423097/1‑94 (MQ=60)

                  TGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTT                                                                             <  SRR4302533.6020551/94‑1 (MQ=60)

                   GGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCTGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTG                                                                            >  SRR4302533.3483276/1‑94 (MQ=60)

                   GGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTG                                                                            >  SRR4302533.2225253/1‑94 (MQ=60)

                   GGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTG                                                                            >  SRR4302533.3157813/1‑94 (MQ=60)

                    GTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGA                                                                           <  SRR4302533.1304589/94‑1 (MQ=60)

                     TCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGAT                                                                          >  SRR4302533.4533243/1‑94 (MQ=60)

                     TCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGAT                                                                          <  SRR4302533.4503950/94‑1 (MQ=60)

                      CAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATT                                                                         >  SRR4302533.4616831/1‑94 (MQ=60)

                      CAAGATTGGTGCCGGGTTACTGGTCGGGAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATT                                                                         >  SRR4302533.157308/1‑94 (MQ=60)

                        AGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTAC                                                                       <  SRR4302533.1178017/94‑1 (MQ=60)

                         GATTGGTGCCGGGGTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCCACTTTCCGCCAGTTGATTACC                                                                      >  SRR4302533.2982569/1‑94 (MQ=60)

                          ATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGgttgttaccg                                                                     >  SRR4302533.6070290/1‑84 (MQ=60)

                          ATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCG                                                                     >  SRR4302533.979622/1‑94 (MQ=60)

                          ATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCG                                                                     <  SRR4302533.6280738/94‑1 (MQ=60)

                            TGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTG                                                                   <  SRR4302533.1460930/94‑1 (MQ=60)

                               TGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTC                                                                <  SRR4302533.3113073/94‑1 (MQ=60)

                                  CGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGC                                                             >  SRR4302533.5485644/1‑94 (MQ=60)

                                    GGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGT                                                           >  SRR4302533.5310839/1‑94 (MQ=60)

                                    GGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGT                                                           >  SRR4302533.3551053/1‑94 (MQ=60)

                                      TTACTGGCCAGTAAGTTGCGGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGC                                                         <  SRR4302533.1715417/94‑1 (MQ=60)

                                       TACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCT                                                        >  SRR4302533.2375007/1‑94 (MQ=60)

                                       TACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCT                                                        >  SRR4302533.4013973/1‑94 (MQ=60)

                                       TACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCT                                                        <  SRR4302533.3419226/94‑1 (MQ=60)

                                        ACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTT                                                       <  SRR4302533.224744/94‑1 (MQ=60)

                                        ACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTT                                                       >  SRR4302533.6225605/1‑94 (MQ=60)

                                         CTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTG                                                      <  SRR4302533.4225748/94‑1 (MQ=60)

                                           GGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCC                                                    >  SRR4302533.5596907/1‑94 (MQ=60)

                                           GGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCC                                                    >  SRR4302533.1060011/1‑94 (MQ=60)

                                            GTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCG                                                   <  SRR4302533.6128804/94‑1 (MQ=60)

                                             TCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGG                                                  <  SRR4302533.4768914/94‑1 (MQ=60)

                                             GCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGG                                                  <  SRR4302533.192407/94‑1 (MQ=60)

                                              CGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGG                                                 >  SRR4302533.2380797/1‑94 (MQ=60)

                                              CGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGG                                                 >  SRR4302533.3687457/1‑94 (MQ=60)

                                              CGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGG                                                 >  SRR4302533.861420/1‑94 (MQ=60)

                                              CGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGG                                                 <  SRR4302533.5385400/94‑1 (MQ=60)

                                               GGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGG                                                >  SRR4302533.5161520/1‑94 (MQ=60)

                                               GGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGG                                                >  SRR4302533.5736234/1‑94 (MQ=60)

                                               GGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGG                                                >  SRR4302533.1179566/1‑94 (MQ=60)

                                               GGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGAAAATTTCCGCCAGTTGATTACCGTGATCGGCGTGCTTGCCGGGG                                                >  SRR4302533.3347771/1‑94 (MQ=60)

                                                   AGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGG                                            <  SRR4302533.1396770/94‑1 (MQ=60)

                                                   AGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGG                                            <  SRR4302533.5158762/94‑1 (MQ=60)

                                                       GCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATC                                        <  SRR4302533.1872355/94‑1 (MQ=60)

                                                       GCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATC                                        >  SRR4302533.3803971/1‑94 (MQ=60)

                                                        GTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCT                                       <  SRR4302533.5721992/94‑1 (MQ=60)

                                                        CTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAGTTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCT                                       >  SRR4302533.3412475/1‑94 (MQ=60)

                                                          GGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTT                                     <  SRR4302533.3289477/94‑1 (MQ=60)

                                                          GGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGGGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTT                                     >  SRR4302533.3491391/1‑94 (MQ=60)

                                                            CGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAA                                   >  SRR4302533.2996944/1‑94 (MQ=60)

                                                            CGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAA                                   >  SRR4302533.3369950/1‑94 (MQ=60)

                                                            CGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAA                                   >  SRR4302533.3921965/1‑94 (MQ=60)

                                                             GGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAAC                                  >  SRR4302533.3052245/1‑94 (MQ=60)

                                                             GGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAAC                                  <  SRR4302533.4539525/94‑1 (MQ=60)

                                                             GGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAAC                                  <  SRR4302533.95232/94‑1 (MQ=60)

                                                              GTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACG                                 <  SRR4302533.682325/94‑1 (MQ=60)

                                                              GTGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACG                                 <  SRR4302533.746375/94‑1 (MQ=60)

                                                               TGTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGG                                >  SRR4302533.5188317/1‑94 (MQ=60)

                                                                GTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTGCGCCAGTTGATTACCGTGCTCGGCGTGCTTGTCGGGGCTTGCATCTTTAACGGG                               >  SRR4302533.166007/1‑94 (MQ=60)

                                                                GTCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGT                               <  SRR4302533.563725/94‑1 (MQ=60)

                                                                 TCATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTG                              >  SRR4302533.840630/1‑94 (MQ=60)

                                                                   ATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCTAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTA                            <  SRR4302533.3521802/94‑1 (MQ=60)

                                                                   ATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTA                            <  SRR4302533.1298002/94‑1 (MQ=60)

                                                                   ATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTA                            <  SRR4302533.3359979/94‑1 (MQ=60)

                                                                   ATTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTA                            <  SRR4302533.1663773/94‑1 (MQ=60)

                                                                    TTTGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAA                           <  SRR4302533.4656832/94‑1 (MQ=60)

                                                                      TGGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACC                         <  SRR4302533.1890243/94‑1 (MQ=60)

                                                                       GGTCCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTNTAACCA                        >  SRR4302533.1505645/1‑94 (MQ=60)

                                                                          CCGGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAAT                     >  SRR4302533.2356510/1‑94 (MQ=60)

                                                                            GGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATAC                   >  SRR4302533.4007548/1‑94 (MQ=60)

                                                                            GGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATAC                   >  SRR4302533.4418963/1‑94 (MQ=60)

                                                                            CGCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATAC                   <  SRR4302533.5208567/94‑1 (MQ=60)

                                                                             GCGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACG                  <  SRR4302533.2238575/94‑1 (MQ=60)

                                                                              CGGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGT                 <  SRR4302533.2643927/94‑1 (MQ=60)

                                                                               GGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTT                <  SRR4302533.4764484/94‑1 (MQ=60)

                                                                               GGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTT                <  SRR4302533.644315/94‑1 (MQ=60)

                                                                               GGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTT                >  SRR4302533.1647055/1‑94 (MQ=60)

                                                                               GGGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTT                <  SRR4302533.3474797/94‑1 (MQ=60)

                                                                                GGGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTG               <  SRR4302533.294801/94‑1 (MQ=60)

                                                                                 GGCTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGC              >  SRR4302533.1036249/1‑94 (MQ=60)

                                                                                   CTTGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCC            >  SRR4302533.3701258/1‑94 (MQ=60)

                                                                                     TGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAG          >  SRR4302533.1115217/1‑94 (MQ=60)

                                                                                     TGGGCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAG          <  SRR4302533.2569776/94‑1 (MQ=60)

                                                                                        GCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTAC       <  SRR4302533.4985481/94‑1 (MQ=60)

                                                                                        GCTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTAC       <  SRR4302533.4754040/94‑1 (MQ=60)

                                                                                         CTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACC      >  SRR4302533.475314/1‑94 (MQ=60)

                                                                                         CTGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACC      <  SRR4302533.2680465/94‑1 (MQ=60)

                                                                                          TGGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCA     <  SRR4302533.2742188/94‑1 (MQ=60)

                                                                                           GGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCAT    >  SRR4302533.335773/1‑94 (MQ=60)

                                                                                           GGTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTAACAT    >  SRR4302533.1161529/1‑94 (MQ=60)

                                                                                            GTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCATG   >  SRR4302533.5455854/1‑94 (MQ=60)

                                                                                            GTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCATG   >  SRR4302533.1801602/1‑94 (MQ=60)

                                                                                            GTGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCATG   <  SRR4302533.2424864/94‑1 (MQ=60)

                                                                                             TGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCATGA  >  SRR4302533.5639379/1‑94 (MQ=60)

                                                                                             TGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCATGA  >  SRR4302533.3996081/1‑94 (MQ=60)

GGACGGCGGCCAGTACACTGGTCAAGATTGGTGCCGGGTTACTGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTGCCGGGGCTGGCATCTTTAACGGTGTAACCAAATACGTTGCCCAGTACCATGA  >  NC_000913/3973915‑3974101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`