Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,987,807	A→G	I198I (ATT→ATC)	hemC ←	porphobilinogen deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,987,807	0	A	G	100.0%	860.2 / NA	264	I198I (ATT→ATC)	hemC	porphobilinogen deaminase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (142/122); total (142/122)

Only 100 of 278 total aligned reads displayed.

GTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCC  >  NC_000913/3987717‑3987896

gtgATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGAt                                                                                         >  1:5809399/1‑93 (MQ=255)

gtgATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGAt                                                                                         <  1:5401100/93‑1 (MQ=255)

     tCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCgg                                                                                    <  1:4780021/93‑1 (MQ=255)

      cAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCggg                                                                                   <  1:6181466/93‑1 (MQ=255)

       aGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGt                                                                                  <  2:3361679/93‑1 (MQ=255)

       aGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGt                                                                                  >  1:2205724/1‑93 (MQ=255)

         cgcgGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTgg                                                                                >  2:2313042/1‑93 (MQ=255)

          gcgGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATGCCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGc                                                                               <  2:855942/93‑1 (MQ=255)

            ggCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCaa                                                                             <  2:2775968/93‑1 (MQ=255)

            ggCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCaa                                                                             <  2:1709424/93‑1 (MQ=255)

             gCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCaac                                                                            <  1:1535976/93‑2 (MQ=255)

              cAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCaacg                                                                           >  1:1060115/1‑91 (MQ=255)

               aaGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCaacgc                                                                          >  2:1245272/1‑90 (MQ=255)

                agcagcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCaacgcg                                                                         >  2:805456/1‑89 (MQ=255)

                  cagcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGgc                                                                       >  2:1580107/1‑93 (MQ=255)

                    gcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGgcgc                                                                     >  2:644175/1‑93 (MQ=255)

                    gcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGgcgc                                                                     >  1:5111678/1‑93 (MQ=255)

                    gcTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGgcgc                                                                     >  2:1995736/1‑93 (MQ=255)

                        gcgAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAAt                                                                 <  1:4924000/93‑1 (MQ=255)

                        gcgAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAAt                                                                 >  2:4287521/1‑93 (MQ=255)

                          gAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATAc                                                               <  1:3999724/93‑1 (MQ=255)

                          gAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATAc                                                               <  1:1916178/93‑1 (MQ=255)

                           aGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACg                                                              <  2:690104/93‑1 (MQ=255)

                            gTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGt                                                             >  2:4466365/1‑93 (MQ=255)

                              gCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGa                                                           >  1:2060285/1‑93 (MQ=255)

                               cGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGAc                                                          <  2:2598591/93‑1 (MQ=255)

                                gTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACt                                                         >  2:3942365/1‑93 (MQ=255)

                                 tGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTc                                                        >  2:5415010/1‑93 (MQ=255)

                                  gAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTcc                                                       >  1:4040457/1‑93 (MQ=255)

                                  gAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTcc                                                       >  1:4475814/1‑93 (MQ=255)

                                   aaTCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCa                                                      >  2:3443300/1‑93 (MQ=255)

                                   aaTCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCa                                                      >  2:1805661/1‑93 (MQ=255)

                                   aaTCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCa                                                      >  1:5033107/1‑93 (MQ=255)

                                    atcatcAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAg                                                     >  2:3874291/1‑93 (MQ=255)

                                    atcatcAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAg                                                     <  1:672221/93‑1 (MQ=255)

                                     tcatcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGa                                                    <  2:3692103/93‑1 (MQ=255)

                                      catcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCCGAc                                                   >  2:5372661/1‑93 (MQ=255)

                                        tcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCt                                                 >  2:5835926/1‑93 (MQ=255)

                                        tcaAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCt                                                 >  1:3846189/1‑93 (MQ=255)

                                          aaGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTaa                                               >  2:963260/1‑93 (MQ=255)

                                          aaGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTaa                                               <  1:4594173/93‑1 (MQ=255)

                                          aaGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTaa                                               <  1:6154800/93‑1 (MQ=255)

                                           aGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTaaa                                              >  2:3070350/1‑93 (MQ=255)

                                               ggcATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGtt                                          >  2:255008/1‑93 (MQ=255)

                                                 cATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGtttt                                        <  1:6032217/93‑1 (MQ=255)

                                                 cATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGtttt                                        <  1:4607049/93‑1 (MQ=255)

                                                  aTTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTa                                       <  1:3322776/93‑1 (MQ=255)

                                                  aTTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTa                                       >  1:233232/1‑93 (MQ=255)

                                                      aaTACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTcc                                   >  2:5989731/1‑93 (MQ=255)

                                                       aTACCCACCGCACCTTGTCCTACCGCCGGGAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAAAGTTTTAGTGCg                                  >  2:9160/1‑93 (MQ=255)

                                                       aTACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCg                                  >  1:4313554/1‑93 (MQ=255)

                                                       aTACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCg                                  >  2:609734/1‑93 (MQ=255)

                                                        tACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCgg                                 >  1:1013719/1‑93 (MQ=255)

                                                        tACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCgg                                 >  1:197812/1‑93 (MQ=255)

                                                         aCCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGc                                <  1:3079712/93‑1 (MQ=255)

                                                          cccACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCt                               >  2:3281580/1‑93 (MQ=255)

                                                           ccACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTa                              >  2:5166744/1‑93 (MQ=255)

                                                           ccACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTa                              <  1:4123132/93‑1 (MQ=255)

                                                           ccACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTa                              >  1:2551699/1‑93 (MQ=255)

                                                           ccACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTa                              <  1:1155048/93‑1 (MQ=255)

                                                             aCCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACg                            <  1:5980786/93‑1 (MQ=255)

                                                             aCCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACg                            >  1:3513340/1‑93 (MQ=255)

                                                             aCCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACg                            >  1:751193/1‑93 (MQ=255)

                                                             aCCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACg                            >  1:2830434/1‑93 (MQ=255)

                                                               cGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGc                          >  1:4739278/1‑93 (MQ=255)

                                                                gCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCa                         <  2:2103784/93‑1 (MQ=255)

                                                                  aCCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAg                       >  1:1643520/1‑93 (MQ=255)

                                                                  aCCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAg                       >  2:4560441/1‑93 (MQ=255)

                                                                  aCCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAg                       >  2:2952143/1‑93 (MQ=255)

                                                                  aCCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAg                       >  1:4195366/1‑93 (MQ=255)

                                                                   ccTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGa                      >  2:2186285/1‑93 (MQ=255)

                                                                   ccTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGa                      >  1:2375626/1‑93 (MQ=255)

                                                                   ccTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGa                      >  2:2364281/1‑93 (MQ=255)

                                                                    cTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGaa                     >  1:908895/1‑93 (MQ=255)

                                                                    cTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGaa                     <  2:1367326/93‑1 (MQ=255)

                                                                     ttGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAat                    >  1:3261418/1‑93 (MQ=255)

                                                                     ttGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAat                    <  2:4973704/93‑1 (MQ=255)

                                                                     ttGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAat                    <  1:3756248/93‑1 (MQ=255)

                                                                     ttGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAat                    >  1:10076/1‑93 (MQ=255)

                                                                      tGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAatg                   <  1:3877389/93‑1 (MQ=255)

                                                                          cTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATgg               <  1:571704/93‑1 (MQ=255)

                                                                           tACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGc              <  2:5805822/93‑1 (MQ=255)

                                                                           tACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGc              <  2:1632911/93‑1 (MQ=255)

                                                                             ccgccgGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCAt            <  2:4201502/93‑1 (MQ=255)

                                                                             ccgccgGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCAt            <  2:4338027/93‑1 (MQ=255)

                                                                              cgccgGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATc           <  2:5658218/93‑1 (MQ=255)

                                                                              cgccgGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATc           <  1:1704210/93‑1 (MQ=255)

                                                                                 cgGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTa        >  2:4870153/1‑93 (MQ=255)

                                                                                 cgGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTa        <  2:3230746/93‑1 (MQ=255)

                                                                                 cgGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTa        <  1:831436/93‑1 (MQ=255)

                                                                                  ggAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAt       <  1:4239295/93‑1 (MQ=255)

                                                                                   gAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAtt      >  2:4915663/1‑93 (MQ=255)

                                                                                   gAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAtt      >  2:542198/1‑93 (MQ=255)

                                                                                   gAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAtt      >  1:5910852/1‑93 (MQ=255)

                                                                                    aaGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTc     <  2:1122517/93‑1 (MQ=255)

                                                                                     agagagATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCg    >  2:3647958/1‑93 (MQ=255)

                                                                                     agagagATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCg    >  1:1373766/1‑93 (MQ=255)

                                                                                      gagagaTCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTctc   <  2:5540592/93‑3 (MQ=255)

                                                                                      gagagaTCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTctc   <  1:2688392/93‑3 (MQ=255)

                                                                                       agagATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGcc  >  1:515401/1‑93 (MQ=255)

GTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCC  >  NC_000913/3987717‑3987896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTT  >  NC_000913/3987714‑3987899

GTGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAG                                                                                              >  SRR4302533.997075/1‑94 (MQ=60)

GTGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAG                                                                                              <  SRR4302533.3228850/94‑1 (MQ=60)

GTGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAG                                                                                              >  SRR4302533.230692/1‑94 (MQ=60)

 TGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGA                                                                                             <  SRR4302533.2997620/94‑1 (MQ=60)

 TGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGA                                                                                             >  SRR4302533.4000291/1‑94 (MQ=60)

 TGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGA                                                                                             <  SRR4302533.878771/94‑1 (MQ=60)

  GGTGGTTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGAT                                                                                            <  SRR4302533.2003362/94‑1 (MQ=60)

  GGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGAT                                                                                            >  SRR4302533.5844481/1‑94 (MQ=60)

   GTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATC                                                                                           <  SRR4302533.5133454/94‑1 (MQ=60)

   GTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATC                                                                                           <  SRR4302533.5433556/94‑1 (MQ=60)

    TGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCT                                                                                          <  SRR4302533.2239708/94‑1 (MQ=60)

     GATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTC                                                                                         >  SRR4302533.1765830/1‑94 (MQ=60)

       TTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGG                                                                                       <  SRR4302533.4146930/94‑1 (MQ=60)

        TCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGG                                                                                      <  SRR4302533.4808979/94‑1 (MQ=60)

        TCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGG                                                                                      >  SRR4302533.1015606/1‑94 (MQ=60)

         CAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGT                                                                                     >  SRR4302533.2219327/1‑94 (MQ=60)

         CAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGT                                                                                     <  SRR4302533.6218587/94‑1 (MQ=60)

          AGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTG                                                                                    <  SRR4302533.5053416/94‑1 (MQ=60)

            CGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGC                                                                                  >  SRR4302533.5853900/1‑94 (MQ=60)

               GGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTTCTACCGCCGGAAGAGAGATCTCGGGTGGCAAC                                                                               >  SRR4302533.5990964/1‑94 (MQ=60)

               GGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAAC                                                                               >  SRR4302533.206949/1‑94 (MQ=60)

                GCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAAcg                                                                              <  SRR4302533.1545207/94‑3 (MQ=60)

                GCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAAcg                                                                              >  SRR4302533.1066347/1‑92 (MQ=60)

                   AGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAAcgcgg                                                                           <  SRR4302533.1385948/94‑6 (MQ=60)

                   AGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAAcgcgg                                                                           <  SRR4302533.102817/94‑6 (MQ=60)

                    GCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGC                                                                          <  SRR4302533.5166238/94‑1 (MQ=60)

                    GCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGC                                                                          <  SRR4302533.3854472/94‑1 (MQ=60)

                    GCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGC                                                                          <  SRR4302533.847628/94‑1 (MQ=60)

                     CAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCG                                                                         <  SRR4302533.5570291/94‑1 (MQ=60)

                     CAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCG                                                                         <  SRR4302533.4038193/94‑1 (MQ=60)

                      AGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGC                                                                        >  SRR4302533.5142570/1‑94 (MQ=60)

                      AGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGC                                                                        <  SRR4302533.1072320/94‑1 (MQ=60)

                       GCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCG                                                                       <  SRR4302533.878636/94‑1 (MQ=60)

                         TCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAA                                                                     <  SRR4302533.3785525/94‑1 (MQ=60)

                          CGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAAT                                                                    <  SRR4302533.6086057/94‑1 (MQ=60)

                           GCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCCCCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATA                                                                   <  SRR4302533.1281521/94‑1 (MQ=60)

                           GCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGCGATCTCGGGTGGCAACGCGGCGCGAATA                                                                   >  SRR4302533.2079215/1‑94 (MQ=60)

                           GCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCCACGCGGCGCGAATA                                                                   >  SRR4302533.4843925/1‑94 (MQ=60)

                           GCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATA                                                                   <  SRR4302533.4953829/94‑1 (MQ=60)

                           GCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATA                                                                   <  SRR4302533.791713/94‑1 (MQ=60)

                             GAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTATCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACG                                                                 >  SRR4302533.6001639/1‑94 (MQ=60)

                             GAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACG                                                                 <  SRR4302533.1927876/94‑1 (MQ=60)

                             GAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACG                                                                 <  SRR4302533.4024076/94‑1 (MQ=60)

                              AGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGT                                                                <  SRR4302533.4371287/94‑1 (MQ=60)

                                TGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGA                                                              >  SRR4302533.2072991/1‑94 (MQ=60)

                                TGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGA                                                              >  SRR4302533.6017107/1‑94 (MQ=60)

                                  CGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACT                                                            <  SRR4302533.270275/94‑1 (MQ=60)

                                  CGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACT                                                            >  SRR4302533.3547225/1‑94 (MQ=60)

                                   GTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTC                                                           >  SRR4302533.5868333/1‑94 (MQ=60)

                                   GTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTC                                                           >  SRR4302533.4310353/1‑94 (MQ=60)

                                   GTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTC                                                           >  SRR4302533.244658/1‑94 (MQ=60)

                                    TGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCC                                                          >  SRR4302533.4502877/1‑94 (MQ=60)

                                    TGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCC                                                          <  SRR4302533.5174477/94‑1 (MQ=60)

                                    TGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCC                                                          >  SRR4302533.4065049/1‑94 (MQ=60)

                                     GAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTATCGCCGGAAGAGAGATCTCGGATGGCAACGCGGCGCGAATACGTGACTCCA                                                         >  SRR4302533.2821818/1‑94 (MQ=60)

                                     GAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCA                                                         >  SRR4302533.5063596/1‑94 (MQ=60)

                                      AATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAG                                                        >  SRR4302533.6202520/1‑94 (MQ=60)

                                      AATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAG                                                        <  SRR4302533.4633639/94‑1 (MQ=60)

                                      AATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAG                                                        >  SRR4302533.4812674/1‑94 (MQ=60)

                                       ATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGA                                                       >  SRR4302533.1592102/1‑94 (MQ=60)

                                       ATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGA                                                       <  SRR4302533.676190/94‑1 (MQ=60)

                                        TCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGAC                                                      >  SRR4302533.3290081/1‑94 (MQ=60)

                                        TCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGAC                                                      <  SRR4302533.5420954/94‑1 (MQ=60)

                                         CATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACC                                                     >  SRR4302533.4794555/1‑94 (MQ=60)

                                          ATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCT                                                    >  SRR4302533.3440914/1‑94 (MQ=60)

                                          ATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCT                                                    >  SRR4302533.3869676/1‑94 (MQ=60)

                                           TCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTA                                                   >  SRR4302533.1938634/1‑94 (MQ=60)

                                            CAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAA                                                  <  SRR4302533.1335057/94‑1 (MQ=60)

                                            CAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAA                                                  >  SRR4302533.3885924/1‑94 (MQ=60)

                                             AAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAA                                                 <  SRR4302533.5664088/94‑1 (MQ=60)

                                             AAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAA                                                 <  SRR4302533.4622001/94‑1 (MQ=60)

                                             AAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAA                                                 <  SRR4302533.6191831/94‑1 (MQ=60)

                                              AGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAAC                                                <  SRR4302533.5621156/94‑1 (MQ=60)

                                              AGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAAC                                                <  SRR4302533.3227294/94‑1 (MQ=60)

                                              AGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAAC                                                <  SRR4302533.453529/94‑1 (MQ=60)

                                               GGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACG                                               >  SRR4302533.2251326/1‑94 (MQ=60)

                                               GGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACG                                               <  SRR4302533.6259552/94‑1 (MQ=60)

                                                  GGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTT                                            <  SRR4302533.2589760/94‑1 (MQ=60)

                                                   GCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTT                                           <  SRR4302533.1552921/94‑1 (MQ=60)

                                                    CATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTA                                          <  SRR4302533.4634953/94‑1 (MQ=60)

                                                    CATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTA                                          >  SRR4302533.234673/1‑94 (MQ=60)

                                                    CATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTA                                          <  SRR4302533.6068775/94‑1 (MQ=60)

                                                     ATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAG                                         >  SRR4302533.2760493/1‑94 (MQ=60)

                                                     ATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAG                                         <  SRR4302533.871350/94‑1 (MQ=60)

                                                     ATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAG                                         >  SRR4302533.1028174/1‑94 (MQ=60)

                                                     ATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAG                                         <  SRR4302533.3343295/94‑1 (MQ=60)

                                                     ATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAG                                         <  SRR4302533.5376935/94‑1 (MQ=60)

                                                       TCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTC                                       >  SRR4302533.4663901/1‑94 (MQ=60)

                                                       TCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTC                                       <  SRR4302533.4256195/94‑1 (MQ=60)

                                                        CAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCC                                      <  SRR4302533.1711035/94‑1 (MQ=60)

                                                        CAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCC                                      >  SRR4302533.1124467/1‑94 (MQ=60)

                                                        CAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCC                                      <  SRR4302533.2366016/94‑1 (MQ=60)

                                                         AATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCG                                     >  SRR4302533.4339522/1‑94 (MQ=60)

                                                         AATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCG                                     <  SRR4302533.1879684/94‑1 (MQ=60)

                                                          ATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGG                                    >  SRR4302533.199058/1‑94 (MQ=60)

                                                          ATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGG                                    >  SRR4302533.1019655/1‑94 (MQ=60)

                                                           TACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGC                                   >  SRR4302533.4036911/1‑94 (MQ=60)

                                                            ACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCT                                  >  SRR4302533.4031790/1‑94 (MQ=60)

                                                            ACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCT                                  <  SRR4302533.3098609/94‑1 (MQ=60)

                                                            ACCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCT                                  <  SRR4302533.72043/94‑1 (MQ=60)

                                                             CCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                 >  SRR4302533.4123965/1‑94 (MQ=60)

                                                             CCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                 >  SRR4302533.2567402/1‑94 (MQ=60)

                                                             CCCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTA                                 >  SRR4302533.4511901/1‑94 (MQ=60)

                                                              CCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAC                                <  SRR4302533.4148166/94‑1 (MQ=60)

                                                              CCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAC                                <  SRR4302533.1161977/94‑1 (MQ=60)

                                                              CCACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTAC                                <  SRR4302533.6045375/94‑1 (MQ=60)

                                                               CACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                               >  SRR4302533.2847855/1‑94 (MQ=60)

                                                               CACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                               >  SRR4302533.755619/1‑94 (MQ=60)

                                                               CACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACG                               >  SRR4302533.3534998/1‑94 (MQ=60)

                                                                CCCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGG                              <  SRR4302533.4442121/94‑1 (MQ=60)

                                                                ACCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGG                              <  SRR4302533.6017009/94‑1 (MQ=60)

                                                                 CCGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGC                             >  SRR4302533.4768013/1‑94 (MQ=60)

                                                                  CGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCA                            >  SRR4302533.950316/1‑94 (MQ=60)

                                                                  CGCACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCA                            >  SRR4302533.6148564/1‑94 (MQ=60)

                                                                    CACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAG                          >  SRR4302533.194564/1‑94 (MQ=60)

                                                                    CACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAG                          >  SRR4302533.4220760/1‑94 (MQ=60)

                                                                    CACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAG                          >  SRR4302533.3945386/1‑94 (MQ=60)

                                                                    CACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAG                          >  SRR4302533.1653470/1‑94 (MQ=60)

                                                                     ACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAACCGTTTTAGTCCGGCTGCGGCAAGA                         >  SRR4302533.2935937/1‑94 (MQ=60)

                                                                     ACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGA                         >  SRR4302533.2390326/1‑94 (MQ=60)

                                                                     ACCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGA                         <  SRR4302533.171045/94‑1 (MQ=60)

                                                                      CCTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAA                        >  SRR4302533.914226/1‑94 (MQ=60)

                                                                       CTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAAT                       >  SRR4302533.693036/1‑94 (MQ=60)

                                                                       CTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAAT                       >  SRR4302533.827685/1‑94 (MQ=60)

                                                                       CTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAAT                       >  SRR4302533.10159/1‑94 (MQ=60)

                                                                       CTTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAAT                       >  SRR4302533.3281536/1‑94 (MQ=60)

                                                                        TTGTCCTACCGCGGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTAAGTCCGGCTACGGCAAGAATG                      <  SRR4302533.3019413/94‑1 (MQ=60)

                                                                        TTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATG                      <  SRR4302533.3779273/94‑1 (MQ=60)

                                                                        TTGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATG                      <  SRR4302533.4718870/94‑1 (MQ=60)

                                                                         TGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGA                     <  SRR4302533.237306/94‑1 (MQ=60)

                                                                         TGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGA                     >  SRR4302533.401357/1‑94 (MQ=60)

                                                                         TGTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGA                     <  SRR4302533.3901052/94‑1 (MQ=60)

                                                                          GTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGAT                    <  SRR4302533.4804154/94‑1 (MQ=60)

                                                                          GTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGAT                    <  SRR4302533.6284732/94‑1 (MQ=60)

                                                                          GTCCTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGAT                    >  SRR4302533.4211230/1‑94 (MQ=60)

                                                                             CTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGC                 >  SRR4302533.343449/1‑94 (MQ=60)

                                                                             CTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGC                 <  SRR4302533.575079/94‑1 (MQ=60)

                                                                             CTACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGC                 >  SRR4302533.1143631/1‑94 (MQ=60)

                                                                              TACCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCA                <  SRR4302533.2201295/94‑1 (MQ=60)

                                                                                CCGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATC              >  SRR4302533.5153837/1‑94 (MQ=60)

                                                                                 CGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCG             <  SRR4302533.4976469/94‑1 (MQ=60)

                                                                                 CGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCG             <  SRR4302533.1714534/94‑1 (MQ=60)

                                                                                 CGCCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCG             >  SRR4302533.5801855/1‑94 (MQ=60)

                                                                                   CCGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTA           <  SRR4302533.3276104/94‑1 (MQ=60)

                                                                                    CGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAT          <  SRR4302533.836309/94‑1 (MQ=60)

                                                                                    CGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAT          >  SRR4302533.386937/1‑94 (MQ=60)

                                                                                    CGGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTAT          <  SRR4302533.3720652/94‑1 (MQ=60)

                                                                                     GGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATT         <  SRR4302533.4264898/94‑1 (MQ=60)

                                                                                     GGAAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATT         >  SRR4302533.5946565/1‑94 (MQ=60)

                                                                                       AAGAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCG       >  SRR4302533.1382030/1‑94 (MQ=60)

                                                                                         GAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCTCC     <  SRR4302533.2704873/94‑1 (MQ=60)

                                                                                         GAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCC     <  SRR4302533.4332157/94‑1 (MQ=60)

                                                                                         GAGAGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCC     >  SRR4302533.518460/1‑94 (MQ=60)

                                                                                            AGATCTCGGGTGGCAACGCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTT  >  SRR4302533.4339366/1‑94 (MQ=60)

GTGGTGATTCAGCGCGGCAAGCAGCTCGCGAGTGCGTGAATCATCAAGGCGGCATTCAATACCCACCGCACCTTGTCCTACCGCCGGAAGAGAAATCTCGGGTGGCAAGCCGGCGCGAATACGTGACTCCAGACCTAAACGTTTTAGTCCGGCTACGGCAAGAATGATGGCATCGTATTCGCCGTT  >  NC_000913/3987714‑3987899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`