Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I2 R1 | 1624 | 250.6 | 12620048 | 98.0% | 12367647 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,991,607 | G→A | D22D (GAC→GAT) V49I (GTC→ATC) |
cyaY ← b3808 → |
hypothetical protein hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,991,607 | 0 | G | A | 99.6% | 1015.9 / ‑5.4 | 274 | D22D (GAC→GAT) V49I (GTC→ATC) | cyaY b3808 | hypothetical protein hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (131/142); minor base C (0/1); total (131/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 285 total aligned reads displayed.
GTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAT > NC_000913/3991517‑3991696 | gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc > 2:5020092/1‑93 (MQ=255)gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc < 2:3120027/93‑1 (MQ=255)gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc > 2:2552090/1‑93 (MQ=255)gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc > 1:213732/1‑93 (MQ=255)gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc < 1:2997058/93‑1 (MQ=255) ttGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATcc < 1:4193030/93‑1 (MQ=255) tGATAATGATTTTGCTGTCACTCTCAAAGGTAACGGTCAGTACGCCGCCGTTGATGGCGTAGTCGATATCTCTGTCGCCATCCCAGTCATCCa > 2:6304089/1‑93 (MQ=255) tGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCa > 1:1423452/1‑93 (MQ=255) tGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCa > 2:2936453/1‑93 (MQ=255) tGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCa < 2:2634249/93‑1 (MQ=255) tGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCa < 2:1708238/93‑1 (MQ=255) tGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCa > 1:3371422/1‑93 (MQ=255) gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg > 2:345510/1‑93 (MQ=255) gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg < 1:2460832/93‑1 (MQ=255) aTAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAgg > 2:233032/1‑93 (MQ=255) tAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGc > 1:1281726/1‑93 (MQ=255) aaTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCg > 1:5600903/1‑93 (MQ=255) aTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGt > 2:1822438/1‑93 (MQ=255) gATTTTCCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc < 1:3904598/93‑1 (MQ=255) aTTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttct > 1:2227772/1‑93 (MQ=255) ttttGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttctt > 2:747579/1‑93 (MQ=255) tttGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttcttc < 1:508062/93‑1 (MQ=255) ctgcCACTCTCAAAGGTAATGGTCAGTACGGCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATg < 1:5123491/93‑1 (MQ=255) tgcCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATgg > 2:3408403/1‑93 (MQ=255) ccACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTc < 1:4492219/93‑1 (MQ=255) ccACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTc < 2:1040592/93‑1 (MQ=255) ccACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTc > 1:4328385/1‑93 (MQ=255) ccACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTc > 2:5768905/1‑93 (MQ=255) cactctcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCa < 2:5704624/90‑1 (MQ=255) ctctcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGc < 1:5347792/92‑1 (MQ=255) ctctcAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGc > 2:1177324/2‑93 (MQ=255) cAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCaga < 2:2186706/93‑1 (MQ=255) aaaGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCagag > 2:4989122/1‑93 (MQ=255) aaaGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCagag < 1:4746108/93‑1 (MQ=255) aaGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGt > 1:4851599/1‑93 (MQ=255) aaGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGt < 1:4130165/93‑1 (MQ=255) aGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGtt < 2:4704535/93‑1 (MQ=255) gTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGa < 2:5484201/93‑1 (MQ=255) aTGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCa < 2:2085451/93‑1 (MQ=255) aTGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCa > 2:4080996/1‑93 (MQ=255) tGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTGTTCAATGGTCAGCCAGAGTTGATCAg > 2:908888/1‑93 (MQ=255) tGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAg < 1:3461438/93‑1 (MQ=255) tCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCa < 2:4842815/93‑1 (MQ=255) cAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAg < 2:3285550/93‑1 (MQ=255) cAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGCCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAg < 2:1935032/93‑1 (MQ=255) aGTCCGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCCTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAgg < 1:3392630/93‑1 (MQ=255) aGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAgg > 1:783938/1‑93 (MQ=255) gTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTTAATGGTCAGCCAGAGTTGATCAGCCAGGc > 2:6191438/1‑93 (MQ=255) gTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGc > 2:4021505/1‑93 (MQ=255) ccgccgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGa < 2:4428735/93‑1 (MQ=255) gccgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGaaa < 2:4492971/93‑1 (MQ=255) gccgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGaaa > 2:2564839/1‑93 (MQ=255) cgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAtt < 1:1813644/93‑1 (MQ=255) cgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAtt > 1:1949887/1‑93 (MQ=255) cgTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAtt > 1:3808530/1‑93 (MQ=255) gTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTc > 1:5817057/1‑93 (MQ=255) gTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTc > 2:4892408/1‑93 (MQ=255) ttGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCa > 1:2662854/1‑93 (MQ=255) tGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCAc < 1:6175121/93‑1 (MQ=255) tGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCAc < 1:4693558/93‑1 (MQ=255) gATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACt > 1:5562031/1‑93 (MQ=255) aTTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTg < 1:2976724/93‑1 (MQ=255) tttCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGt > 1:2763624/1‑93 (MQ=255) tttCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGt < 2:12454/93‑1 (MQ=255) ttCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTc < 1:2553132/93‑1 (MQ=255) tCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCg < 1:1108103/93‑1 (MQ=255) cGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGt < 2:3548177/93‑1 (MQ=255) gCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGtt < 1:185479/93‑1 (MQ=255) aGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCa < 2:720965/93‑1 (MQ=255) gTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAt > 2:5877690/1‑93 (MQ=255) tCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAtt < 2:6057028/93‑1 (MQ=255) cGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttg < 1:494192/93‑1 (MQ=255) gATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgt < 2:2205365/93‑1 (MQ=255) gATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgt < 1:3604986/93‑1 (MQ=255) gATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgt < 2:419092/93‑1 (MQ=255) atatCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCAttgtt > 1:5958905/1‑93 (MQ=255) atCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATtgttgt > 1:369643/1‑93 (MQ=255) tCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTa > 2:2429835/1‑93 (MQ=255) tCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTa > 2:1285006/1‑93 (MQ=255) cTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATcc > 1:5978561/1‑93 (MQ=255) cTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATcc < 2:3494401/93‑1 (MQ=255) tGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCt < 1:1657365/93‑1 (MQ=255) tGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGATCATTGTTGTATCCt > 2:4672046/1‑93 (MQ=255) tCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGt > 1:3941129/1‑93 (MQ=255) cGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGtt > 2:3305888/1‑93 (MQ=255) gctaTCCCAGTCATCCAGGCGTTCTTCAGTGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGttt < 1:6034483/90‑1 (MQ=255) gCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGGCAGGCGATGTAATTCACTGTCGTTCGTTTATGTCTCCTGttt > 2:5077109/1‑93 (MQ=255) ccATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGtttt < 1:5479000/93‑1 (MQ=255) ctCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTa < 1:1477116/92‑1 (MQ=255) aTCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTa > 1:1702897/1‑93 (MQ=255) tCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTaa > 2:3659717/1‑93 (MQ=255) cccAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAg < 2:1482641/93‑1 (MQ=255) ccAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGt < 2:5598478/93‑1 (MQ=255) ccAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGt < 2:3792999/93‑1 (MQ=255) ccAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGt > 2:3829227/1‑93 (MQ=255) cAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTg > 2:2819529/1‑93 (MQ=255) aGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGa > 2:6006711/1‑93 (MQ=255) gtcatcCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAt < 2:3959405/93‑1 (MQ=255) gtcatcCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAt > 2:3013407/1‑93 (MQ=255) gtcatcCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAt > 2:2606167/1‑93 (MQ=255) | GTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAT > NC_000913/3991517‑3991696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
GCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGCG > NC_000913/3991514‑3991700 | GCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCA < SRR4302533.4374690/94‑1 (MQ=60)CCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCA < SRR4302533.1747925/94‑1 (MQ=60) CGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCAT < SRR4302533.307419/94‑1 (MQ=60) CGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCAT > SRR4302533.5664260/1‑94 (MQ=60) CGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCAT > SRR4302533.253602/1‑94 (MQ=60) CGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCAT > SRR4302533.1095667/1‑94 (MQ=60) GGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATC > SRR4302533.215077/1‑94 (MQ=60) GTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCC < SRR4302533.3015384/94‑1 (MQ=60) GTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCC > SRR4302533.521148/1‑94 (MQ=60) GTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCC > SRR4302533.3444659/1‑94 (MQ=60) TTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCA < SRR4302533.4218408/94‑1 (MQ=60) TTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCA > SRR4302533.1432063/1‑94 (MQ=60) TTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCA < SRR4302533.5955783/94‑1 (MQ=60) TTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCA > SRR4302533.3392240/1‑94 (MQ=60) TGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAG < SRR4302533.3508653/94‑1 (MQ=60) GATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGG < SRR4302533.2476017/94‑1 (MQ=60) ATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGC < SRR4302533.5144336/94‑1 (MQ=60) ATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGC > SRR4302533.1289440/1‑94 (MQ=60) TAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCG > SRR4302533.5634746/1‑94 (MQ=60) AATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGT > SRR4302533.2999959/1‑94 (MQ=60) ATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTT > SRR4302533.3625590/1‑94 (MQ=60) GATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCT > SRR4302533.2241521/1‑94 (MQ=60) GATTTTCCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCT < SRR4302533.3928445/94‑1 (MQ=60) ATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTT > SRR4302533.2141837/1‑94 (MQ=60) TTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTC > SRR4302533.6009898/1‑94 (MQ=60) TTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCA < SRR4302533.2710215/94‑1 (MQ=60) TTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCA < SRR4302533.511078/94‑1 (MQ=60) TGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAAT < SRR4302533.5385279/94‑1 (MQ=60) TGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAAT > SRR4302533.958134/1‑94 (MQ=60) GCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATG > SRR4302533.4542744/1‑94 (MQ=60) CTGCCACTCTCAAAGGTAATGGTCAGTACGGCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGG < SRR4302533.5154445/94‑1 (MQ=60) CTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGG < SRR4302533.2833107/94‑1 (MQ=60) TGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGT > SRR4302533.2435973/1‑94 (MQ=60) TGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGT < SRR4302533.2642750/94‑1 (MQ=60) GCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTC > SRR4302533.4354461/1‑94 (MQ=60) CCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCA > SRR4302533.2225810/1‑94 (MQ=60) CCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCA > SRR4302533.2564115/1‑94 (MQ=60) CCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCA < SRR4302533.4519422/94‑1 (MQ=60) CACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAG < SRR4302533.201376/94‑1 (MQ=60) ACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGC > SRR4302533.5531634/1‑94 (MQ=60) CTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCC < SRR4302533.5379873/94‑1 (MQ=60) CTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCC > SRR4302533.4182823/1‑94 (MQ=60) CTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAG < SRR4302533.3939408/94‑1 (MQ=60) CTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAG < SRR4302533.1613498/94‑1 (MQ=60) TCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGA > SRR4302533.4774558/1‑94 (MQ=60) TCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGA < SRR4302533.6029070/94‑1 (MQ=60) TCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGA < SRR4302533.30041/94‑1 (MQ=60) CAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAG > SRR4302533.611042/1‑94 (MQ=60) AAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGT > SRR4302533.4881000/1‑94 (MQ=60) AAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGT < SRR4302533.5528099/94‑1 (MQ=60) AAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGT < SRR4302533.4774884/94‑1 (MQ=60) AAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTT < SRR4302533.4155235/94‑1 (MQ=60) AAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTT < SRR4302533.4894658/94‑1 (MQ=60) AAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTT > SRR4302533.4407224/1‑94 (MQ=60) GGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGA > SRR4302533.1714418/1‑94 (MQ=60) GTAATGGTCAGTACGCCGCGGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGAT < SRR4302533.1621067/94‑1 (MQ=60) TAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATC < SRR4302533.2892289/94‑1 (MQ=60) TAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATC > SRR4302533.4169091/1‑94 (MQ=60) AATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCA < SRR4302533.4040185/94‑1 (MQ=60) TGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGC < SRR4302533.5613158/94‑1 (MQ=60) TGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGC < SRR4302533.3482803/94‑1 (MQ=60) TGGTCAGTACGCCGCCGTTGATTGCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGC < SRR4302533.1673870/94‑1 (MQ=60) TGGTCAAGACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGC < SRR4302533.1673872/94‑1 (MQ=60) GTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCA > SRR4302533.2456880/1‑94 (MQ=60) TCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAG < SRR4302533.4640602/94‑1 (MQ=60) CAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGG > SRR4302533.788550/1‑94 (MQ=60) AGTCCGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCCTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGC < SRR4302533.3413581/94‑1 (MQ=60) AGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGC > SRR4302533.1714119/1‑94 (MQ=60) AGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGC > SRR4302533.3916883/1‑94 (MQ=60) CGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATG < SRR4302533.3949558/94‑1 (MQ=60) CGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATG > SRR4302533.6182872/1‑94 (MQ=60) GCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGA < SRR4302533.4296365/94‑1 (MQ=60) GCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGA > SRR4302533.5818628/1‑94 (MQ=60) GCCGCCGTTGATTGCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGA < SRR4302533.649589/94‑1 (MQ=60) CCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAA < SRR4302533.2555565/94‑1 (MQ=60) CCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAA > SRR4302533.4503286/1‑94 (MQ=60) GCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAAT > SRR4302533.1922207/1‑94 (MQ=60) CCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATT < SRR4302533.4806863/94‑1 (MQ=60) CCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATT > SRR4302533.3831828/1‑94 (MQ=60) CCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATT < SRR4302533.3830875/94‑1 (MQ=60) CCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATT > SRR4302533.677086/1‑94 (MQ=60) CCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATT > SRR4302533.1961771/1‑94 (MQ=60) CGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTC > SRR4302533.5852198/1‑94 (MQ=60) CGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTC < SRR4302533.1824718/94‑1 (MQ=60) GTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCA < SRR4302533.2650537/94‑1 (MQ=60) GTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCA > SRR4302533.2679204/1‑94 (MQ=60) TGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACT > SRR4302533.5595645/1‑94 (MQ=60) TGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACT < SRR4302533.4722000/94‑1 (MQ=60) TGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACT < SRR4302533.6212226/94‑1 (MQ=60) GATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTG > SRR4302533.5069021/1‑94 (MQ=60) ATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGT > SRR4302533.2780567/1‑94 (MQ=60) ATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGT < SRR4302533.2994937/94‑1 (MQ=60) TTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTC < SRR4302533.3398223/94‑1 (MQ=60) TTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCG < SRR4302533.2568843/94‑1 (MQ=60) TCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGT < SRR4302533.1114674/94‑1 (MQ=60) CGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGCTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTT < SRR4302533.3407084/94‑1 (MQ=60) GCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTC < SRR4302533.186631/94‑1 (MQ=60) CAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCA < SRR4302533.1342259/94‑1 (MQ=60) GTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATT < SRR4302533.484084/94‑1 (MQ=60) CGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGT < SRR4302533.497140/94‑1 (MQ=60) CGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGT > SRR4302533.5871917/1‑94 (MQ=60) CGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGCTCATTGT > SRR4302533.5398415/1‑94 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT < SRR4302533.3050828/94‑1 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT > SRR4302533.5994950/1‑94 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT > SRR4302533.5612529/1‑94 (MQ=60) GATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTT < SRR4302533.3627175/94‑1 (MQ=60) ATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTG < SRR4302533.3700184/94‑1 (MQ=60) ATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTG > SRR4302533.5362539/1‑94 (MQ=60) TATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGT > SRR4302533.371873/1‑94 (MQ=60) ATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTA > SRR4302533.1452859/1‑94 (MQ=60) TCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTAT < SRR4302533.3426303/94‑1 (MQ=60) TCGCTGTCGCCATCCCAGTCATCCAGGCGGTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTAT > SRR4302533.3203411/1‑94 (MQ=60) GCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCC < SRR4302533.406829/94‑1 (MQ=60) GCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCC > SRR4302533.6014773/1‑94 (MQ=60) CTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCT < SRR4302533.1217958/94‑1 (MQ=60) CTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCT < SRR4302533.5013522/94‑1 (MQ=60) TGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTTTCCTG > SRR4302533.4726375/1‑94 (MQ=60) TGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTG > SRR4302533.1934616/1‑94 (MQ=60) TGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTG < SRR4302533.1667394/94‑1 (MQ=60) CGTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTG < SRR4302533.1847259/94‑1 (MQ=60) GTCGCCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGT > SRR4302533.3965178/1‑94 (MQ=60) GCTATCCCAGTCATCCAGGCGTTCTTCAGTGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTT < SRR4302533.6071054/94‑1 (MQ=60) CCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTT < SRR4302533.5512030/94‑1 (MQ=60) CCATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTT < SRR4302533.4920686/94‑1 (MQ=60) CATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTA > SRR4302533.1713214/1‑94 (MQ=60) CTCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAA < SRR4302533.1486043/94‑1 (MQ=60) ATCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAA > SRR4302533.2233525/1‑94 (MQ=60) TCCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAG > SRR4302533.1480281/1‑94 (MQ=60) CCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGT < SRR4302533.825470/94‑1 (MQ=60) CCCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGT > SRR4302533.3794755/1‑94 (MQ=60) CCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTG > SRR4302533.3890161/1‑94 (MQ=60) CCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTG < SRR4302533.5736066/94‑1 (MQ=60) CCAGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTG > SRR4302533.1413495/1‑94 (MQ=60) AGTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGAT < SRR4302533.6041811/94‑1 (MQ=60) GTCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATG > SRR4302533.6115522/1‑94 (MQ=60) TCATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGG < SRR4302533.6249824/94‑1 (MQ=60) CATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGC < SRR4302533.2928230/94‑1 (MQ=60) CATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGC < SRR4302533.1924382/94‑1 (MQ=60) ATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGCG > SRR4302533.3011493/1‑94 (MQ=60) ATCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGCG < SRR4302533.990449/94‑1 (MQ=60) | GCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTCAGCCAGAGTTGATCAGCCAGGCGATGAAATTCACTGTCGTTCATTGTTGTATCCTGTTTTTAAGTGATGGCG > NC_000913/3991514‑3991700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |