Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,001,421	2 bp→GC	coding (381‑382/903 nt)	rarD ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,001,421	0	C	G	100.0%	697.2 / NA	218	G128R (GGA→CGA)	rarD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (108/110); total (108/110)
*	NC_000913	4,001,422	0	G	C	100.0%	697.2 / NA	218	D127E (GAC→GAG)	rarD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (108/110); total (108/110)

Only 100 of 223 total aligned reads displayed.

TAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTT  >  NC_000913/4001334‑4001508

||

  ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCg                                                                                  >  2:1451390/1‑93 (MQ=255)

  ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCg                                                                                  >  2:1859451/1‑93 (MQ=255)

  ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCg                                                                                  >  2:4012809/1‑93 (MQ=255)

   taGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGa                                                                                 <  1:1037593/93‑1 (MQ=255)

   taGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGa                                                                                 >  1:33149/1‑93 (MQ=255)

   taGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGa                                                                                 >  2:2077642/1‑93 (MQ=255)

     ggTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                               <  1:2807789/93‑1 (MQ=255)

     ggTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                               <  2:5298568/93‑1 (MQ=255)

     ggTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                               >  1:687660/1‑93 (MQ=255)

     ggTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                               >  2:3120997/1‑93 (MQ=255)

      ggaGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGa                                                                              <  1:1161364/91‑1 (MQ=255)

       tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAggca                                                                             >  1:6127939/1‑91 (MQ=255)

       tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaa                                                                             <  1:1834641/93‑1 (MQ=255)

        aGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaa                                                                            >  1:1401400/1‑93 (MQ=255)

         gCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaaa                                                                           <  2:1785105/93‑1 (MQ=255)

         gCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaaa                                                                           >  2:3216467/1‑93 (MQ=255)

          cGACCCAAAAGTCCACAGCTGGACTAACACGCCACATACCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAat                                                                          <  2:6104780/93‑1 (MQ=255)

            aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                        >  2:2221362/1‑93 (MQ=255)

            aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                        >  1:3920741/1‑93 (MQ=255)

            aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                        <  2:6024896/93‑1 (MQ=255)

            aaCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                        >  2:4903523/1‑93 (MQ=255)

              ccAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcatc                                                                      >  2:4998987/1‑93 (MQ=255)

                aaaaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATccc                                                                    >  2:4790704/1‑93 (MQ=255)

                aaaaGGCCACAGCTGGACAACCACGCCACATATCGCAAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATccc                                                                    <  1:1483430/93‑1 (MQ=255)

                   aGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAg                                                                 >  2:2810891/1‑93 (MQ=255)

                    gTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGc                                                                >  2:2126619/1‑93 (MQ=255)

                      ccACAGCTGGACTACCACGCCACATATCTCAAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGcac                                                              <  2:5600849/93‑1 (MQ=255)

                       cacaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGcaca                                                             >  2:2557595/1‑93 (MQ=255)

                       cacaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCACCAGcaca                                                             >  1:952844/1‑93 (MQ=255)

                        acaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACaa                                                            >  2:742103/1‑93 (MQ=255)

                          aGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATg                                                          <  2:4813658/93‑1 (MQ=255)

                             tGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAACATCATCCCCAGCACAATGTTc                                                       >  2:4385216/1‑93 (MQ=255)

                             tGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTc                                                       <  1:3426350/93‑1 (MQ=255)

                              ggACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCa                                                      >  1:4944871/1‑93 (MQ=255)

                              ggACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCa                                                      <  2:4635496/93‑1 (MQ=255)

                               gACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAc                                                     <  2:1559874/93‑1 (MQ=255)

                               gACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAc                                                     <  1:4916033/93‑1 (MQ=255)

                                aCTAACCCGCCACATATCCCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAcc                                                    <  2:1178024/93‑1 (MQ=255)

                                aCTAACACGCCACATATCTCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAcc                                                    <  1:644197/93‑1 (MQ=255)

                                 cTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCa                                                   <  1:2404585/93‑1 (MQ=255)

                                  tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAg                                                  >  2:1491991/1‑93 (MQ=255)

                                   accacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGc                                                 <  2:50809/91‑1 (MQ=255)

                                   aaCACGCCACATATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGc                                                 <  1:2478215/93‑1 (MQ=255)

                                   aaCACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGc                                                 <  1:1224525/93‑1 (MQ=255)

                                     cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                               >  2:346494/1‑93 (MQ=255)

                                     cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                               <  1:3762293/93‑1 (MQ=255)

                                     cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGAgg                                               <  1:3664629/93‑1 (MQ=255)

                                     cacGCCACATATCCCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                               <  2:6183735/93‑1 (MQ=255)

                                      acGCAACATATCTCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCggg                                              <  2:1309064/93‑1 (MQ=255)

                                         ccACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTta                                           <  1:1312346/93‑1 (MQ=255)

                                         ccACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTta                                           <  1:5423857/93‑1 (MQ=255)

                                          cacaTACCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaa                                          <  1:2206123/93‑1 (MQ=255)

                                           acaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                         >  1:4325309/1‑93 (MQ=255)

                                           acaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                         >  2:1980268/1‑93 (MQ=255)

                                           acaTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                         >  2:5830295/1‑93 (MQ=255)

                                            caTATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaata                                        >  1:2583310/1‑93 (MQ=255)

                                            aatatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaata                                        <  2:5970895/92‑1 (MQ=255)

                                             atatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaataa                                       >  1:5651839/1‑93 (MQ=255)

                                              tatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATaaa                                      <  1:2111823/93‑1 (MQ=255)

                                               atCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAg                                     <  1:5919861/93‑1 (MQ=255)

                                                tCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGt                                    <  1:4908377/93‑1 (MQ=255)

                                                 cGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTa                                   >  2:4772864/1‑93 (MQ=255)

                                                  gCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTaa                                  >  1:2424507/1‑93 (MQ=255)

                                                  gCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTaa                                  >  1:3637408/1‑93 (MQ=255)

                                                   ccAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAc                                 <  2:3884410/93‑1 (MQ=255)

                                                    cAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAcc                                >  1:5071996/1‑93 (MQ=255)

                                                    cAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAca                                >  1:3563328/1‑92 (MQ=255)

                                                      gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                              <  2:2332738/93‑1 (MQ=255)

                                                      gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                              >  2:3789974/1‑93 (MQ=255)

                                                      gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                              <  1:3825216/93‑1 (MQ=255)

                                                      gAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaa                              >  2:797264/1‑93 (MQ=255)

                                                       aaTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAg                             <  1:1123815/93‑1 (MQ=255)

                                                       aaTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGATAATAAAGTAACCAAg                             >  2:3073967/1‑93 (MQ=255)

                                                           cccGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTc                         <  2:431941/92‑1 (MQ=255)

                                                           cccGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTc                         <  1:1682073/92‑1 (MQ=255)

                                                           aCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTc                         >  1:2917158/1‑93 (MQ=255)

                                                            ccGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcg                        >  2:3432892/1‑92 (MQ=255)

                                                             cGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgc                       <  1:2237363/93‑3 (MQ=255)

                                                              gccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgct                      >  2:2682565/1‑90 (MQ=255)

                                                                 agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTcc                   >  1:851208/1‑93 (MQ=255)

                                                                  gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                  >  1:6231337/1‑93 (MQ=255)

                                                                    caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                <  2:1053895/93‑1 (MQ=255)

                                                                     aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCa               <  1:1946643/93‑1 (MQ=255)

                                                                      ttGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat              <  1:4615338/93‑1 (MQ=255)

                                                                      ttGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCat              >  2:4175027/1‑93 (MQ=255)

                                                                       tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata             >  2:4711250/1‑93 (MQ=255)

                                                                       tGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata             <  2:5659564/93‑1 (MQ=255)

                                                                        gCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat            <  2:5591458/93‑1 (MQ=255)

                                                                          aTCCGGCGGAATCGCTTGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATgg          >  1:3463249/1‑93 (MQ=255)

                                                                          aTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATgg          >  2:6244454/1‑93 (MQ=255)

                                                                           tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt         <  1:521755/93‑1 (MQ=255)

                                                                           tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGt         >  1:4366726/1‑93 (MQ=255)

                                                                            tcggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTg        <  2:1696898/92‑1 (MQ=255)

                                                                            ccGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTg        <  1:5886867/93‑1 (MQ=255)

                                                                            ccGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTg        <  2:5357424/93‑1 (MQ=255)

                                                                             cggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACTAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGa       <  1:4090420/93‑1 (MQ=255)

                                                                              ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt      <  1:2857128/93‑1 (MQ=255)

                                                                              ggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt      >  1:201358/1‑93 (MQ=255)

                                                                               gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAtt     >  2:3346880/1‑93 (MQ=255)

                                                                                  gAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGtt  <  1:4546776/93‑1 (MQ=255)

||

TAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTT  >  NC_000913/4001334‑4001508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGCGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCA  >  NC_000913/4001328‑4001510

GCGCGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCG                                                                                           <  SRR4302533.1292873/94‑1 (MQ=60)

GCGCGATAATAGGTAGCGAACAAAAAGTCCACAGCGGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCG                                                                                           <  SRR4302533.3295506/94‑1 (MQ=60)

     ATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGC                                                                                      <  SRR4302533.872422/94‑1 (MQ=60)

      TAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCC                                                                                     <  SRR4302533.4305970/94‑1 (MQ=60)

       AATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCG                                                                                    >  SRR4302533.1895955/1‑94 (MQ=60)

       AATAGCTAGCGAACCAAAAGTCCACAGCTGGACAAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCG                                                                                    <  SRR4302533.2248131/94‑1 (MQ=60)

        ATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGA                                                                                   >  SRR4302533.33374/1‑94 (MQ=60)

         TAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAG                                                                                  <  SRR4302533.1043693/94‑1 (MQ=60)

          AGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGG                                                                                 >  SRR4302533.691727/1‑94 (MQ=60)

           GGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGA                                                                                <  SRR4302533.2825069/94‑1 (MQ=60)

           GGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGA                                                                                >  SRR4302533.5082145/1‑94 (MQ=60)

           GGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGA                                                                                <  SRR4302533.1993022/94‑1 (MQ=60)

            GTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGCA                                                                               >  SRR4302533.6164872/1‑94 (MQ=60)

            GGAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAA                                                                               <  SRR4302533.1168334/94‑1 (MQ=60)

             TAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAA                                                                              >  SRR4302533.1409850/1‑94 (MQ=60)

             TAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAA                                                                              <  SRR4302533.1845837/94‑1 (MQ=60)

              AGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAA                                                                             >  SRR4302533.5456088/1‑94 (MQ=60)

              AGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAA                                                                             <  SRR4302533.3704033/94‑1 (MQ=60)

                 GAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCA                                                                          >  SRR4302533.3944684/1‑94 (MQ=60)

                  AACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAT                                                                         <  SRR4302533.4518671/94‑1 (MQ=60)

                     CAAAAGTCCGCAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      <  SRR4302533.4775414/94‑1 (MQ=60)

                     CAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      <  SRR4302533.77683/94‑1 (MQ=60)

                     CAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCAAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      >  SRR4302533.2674166/1‑94 (MQ=60)

                     CAAAAGCCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCC                                                                      <  SRR4302533.2388927/94‑1 (MQ=60)

                      AAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCC                                                                     >  SRR4302533.2393783/1‑94 (MQ=60)

                      AAAAGGCCACAGCTGGACAACCACGCCACATATCGCAAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCC                                                                     <  SRR4302533.1492385/94‑1 (MQ=60)

                       AAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCA                                                                    <  SRR4302533.738248/94‑1 (MQ=60)

                        AAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAG                                                                   <  SRR4302533.6156854/94‑1 (MQ=60)

                        AAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAG                                                                   >  SRR4302533.4085944/1‑94 (MQ=60)

                         AGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGC                                                                  >  SRR4302533.4972350/1‑94 (MQ=60)

                         AGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCCGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGC                                                                  >  SRR4302533.1153662/1‑94 (MQ=60)

                           TCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCAC                                                                >  SRR4302533.1464194/1‑94 (MQ=60)

                            CCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACA                                                               >  SRR4302533.678313/1‑94 (MQ=60)

                            CCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCACCAGCACA                                                               >  SRR4302533.958440/1‑94 (MQ=60)

                               CAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATG                                                            <  SRR4302533.3672573/94‑1 (MQ=60)

                                  CTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTC                                                         >  SRR4302533.3810334/1‑94 (MQ=60)

                                  CTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTC                                                         <  SRR4302533.632981/94‑1 (MQ=60)

                                   TGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCA                                                        >  SRR4302533.4974799/1‑94 (MQ=60)

                                   TGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCA                                                        >  SRR4302533.899661/1‑94 (MQ=60)

                                   TGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCA                                                        <  SRR4302533.3447516/94‑1 (MQ=60)

                                   TGGACCAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCA                                                        <  SRR4302533.1214166/94‑1 (MQ=60)

                                     GACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACC                                                      <  SRR4302533.4945810/94‑1 (MQ=60)

                                      ACTAACACGCCACATATCTCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCA                                                     <  SRR4302533.647991/94‑1 (MQ=60)

                                       CTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAG                                                    <  SRR4302533.2419435/94‑1 (MQ=60)

                                       CTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAG                                                    <  SRR4302533.2868512/94‑1 (MQ=60)

                                         AACACGCCACATATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCG                                                  <  SRR4302533.2493499/94‑1 (MQ=60)

                                         AACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCG                                                  <  SRR4302533.1231866/94‑1 (MQ=60)

                                           CACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGG                                                <  SRR4302533.3785356/94‑1 (MQ=60)

                                           CACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGAGGG                                                <  SRR4302533.3687155/94‑1 (MQ=60)

                                            ACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGT                                               >  SRR4302533.1111463/1‑94 (MQ=60)

                                               CCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAA                                            <  SRR4302533.1320221/94‑1 (MQ=60)

                                               CCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAA                                            <  SRR4302533.5456523/94‑1 (MQ=60)

                                               CCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAA                                            <  SRR4302533.3598249/94‑1 (MQ=60)

                                                CACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAAT                                           >  SRR4302533.4351365/1‑94 (MQ=60)

                                                CACATACCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAAT                                           <  SRR4302533.2219727/94‑1 (MQ=60)

                                                 ACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATA                                          >  SRR4302533.2599196/1‑94 (MQ=60)

                                                 ACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATA                                          <  SRR4302533.1581271/94‑1 (MQ=60)

                                                  CATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAA                                         >  SRR4302533.5685999/1‑94 (MQ=60)

                                                    TATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAG                                       <  SRR4302533.2124850/94‑1 (MQ=60)

                                                     ATCGCCAGAATCGCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGT                                      <  SRR4302533.59264/94‑1 (MQ=60)

                                                     ATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGT                                      <  SRR4302533.5955644/94‑1 (MQ=60)

                                                     ATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGT                                      >  SRR4302533.3726402/1‑94 (MQ=60)

                                                     ATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTAGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGA                                      >  SRR4302533.3411142/1‑94 (MQ=60)

                                                      TCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTA                                     <  SRR4302533.4938115/94‑1 (MQ=60)

                                                      TCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTA                                     <  SRR4302533.277655/94‑1 (MQ=60)

                                                      TCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTA                                     <  SRR4302533.4938116/94‑1 (MQ=60)

                                                       CGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAA                                    >  SRR4302533.3659771/1‑94 (MQ=60)

                                                       CGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAA                                    >  SRR4302533.2439476/1‑94 (MQ=60)

                                                        CCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAC                                   <  SRR4302533.1361215/94‑1 (MQ=60)

                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACC                                  <  SRR4302533.6125348/94‑1 (MQ=60)

                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACC                                  >  SRR4302533.5102652/1‑94 (MQ=60)

                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACA                                  >  SRR4302533.3585283/1‑94 (MQ=60)

                                                         CCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACA                                  >  SRR4302533.1709533/1‑94 (MQ=60)

                                                           AGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAA                                >  SRR4302533.4375385/1‑94 (MQ=60)

                                                           AGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAA                                <  SRR4302533.259395/94‑1 (MQ=60)

                                                            GAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAG                               <  SRR4302533.2190124/94‑1 (MQ=60)

                                                            GAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAG                               <  SRR4302533.3848601/94‑1 (MQ=60)

                                                            GAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAG                               <  SRR4302533.4671639/94‑1 (MQ=60)

                                                             AATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGG                              <  SRR4302533.1130484/94‑1 (MQ=60)

                                                             AATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGG                              <  SRR4302533.3381183/94‑1 (MQ=60)

                                                              ATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGC                             >  SRR4302533.5353518/1‑94 (MQ=60)

                                                               TCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCT                            <  SRR4302533.4584870/94‑1 (MQ=60)

                                                               TCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCT                            <  SRR4302533.3908463/94‑1 (MQ=60)

                                                                CCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTC                           <  SRR4302533.2901284/94‑1 (MQ=60)

                                                                CACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTC                           >  SRR4302533.2935041/1‑94 (MQ=60)

                                                                 CCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCG                          <  SRR4302533.1692261/94‑1 (MQ=60)

                                                                   CGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgct                        <  SRR4302533.2251192/94‑4 (MQ=60)

                                                                    GCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgctt                       >  SRR4302533.5503756/1‑90 (MQ=60)

                                                                     CCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCgcttc                      >  SRR4302533.750237/1‑89 (MQ=60)

                                                                      CAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCC                     >  SRR4302533.856190/1‑94 (MQ=60)

                                                                       AGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCA                    >  SRR4302533.6268655/1‑94 (MQ=60)

                                                                        GCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAG                   <  SRR4302533.5162980/94‑1 (MQ=60)

                                                                          CATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCA                 >  SRR4302533.2477092/1‑94 (MQ=60)

                                                                           ATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCAT                <  SRR4302533.1958512/94‑1 (MQ=60)

                                                                            TTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATA               <  SRR4302533.4643289/94‑1 (MQ=60)

                                                                             TGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATAT              <  SRR4302533.5153239/94‑1 (MQ=60)

                                                                               CATCCGGCGGAATCGCTTGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG            >  SRR4302533.3484628/1‑94 (MQ=60)

                                                                               CATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGG            <  SRR4302533.4256834/94‑1 (MQ=60)

                                                                                ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT           <  SRR4302533.1890037/94‑1 (MQ=60)

                                                                                ATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGT           >  SRR4302533.4393085/1‑94 (MQ=60)

                                                                                 TCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTG          <  SRR4302533.524851/94‑1 (MQ=60)

                                                                                  CCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGA         <  SRR4302533.5922435/94‑1 (MQ=60)

                                                                                   CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACTAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT        <  SRR4302533.4115321/94‑1 (MQ=60)

                                                                                   CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT        >  SRR4302533.202638/1‑94 (MQ=60)

                                                                                   CGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAT        <  SRR4302533.3478797/94‑1 (MQ=60)

                                                                                    GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT       <  SRR4302533.2874708/94‑1 (MQ=60)

                                                                                    GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT       >  SRR4302533.6175630/1‑94 (MQ=60)

                                                                                    GGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATT       <  SRR4302533.3020907/94‑1 (MQ=60)

                                                                                     GCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTG      <  SRR4302533.2431461/94‑1 (MQ=60)

                                                                                      CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT     <  SRR4302533.5851633/94‑1 (MQ=60)

                                                                                      CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGT     >  SRR4302533.1398535/1‑94 (MQ=60)

                                                                                      CGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATAGTGATTGT     >  SRR4302533.1312277/1‑94 (MQ=60)

                                                                                       GGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTT    >  SRR4302533.2424617/1‑94 (MQ=60)

                                                                                        GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC   <  SRR4302533.3516515/94‑1 (MQ=60)

                                                                                        GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC   <  SRR4302533.2033885/94‑1 (MQ=60)

                                                                                        GAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTC   <  SRR4302533.4574311/94‑1 (MQ=60)

                                                                                         AATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCA  >  SRR4302533.1314569/1‑94 (MQ=60)

GCGCGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCA  >  NC_000913/4001328‑4001510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`