Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,375 |
+A |
coding (458/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,372 | 1 | . | A | 99.0%
| 346.5
/ ‑3.8
| 96 | coding (455/516 nt) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (32/63); total (33/63) |
| Fisher's exact test for biased strand distribution p-value = 3.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 120 total aligned reads displayed.
GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAA‑G‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCC > NC_000913/4008280‑4008449
|
gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTc < 2:341848/93‑1 (MQ=255)
gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTc < 2:4402295/93‑1 (MQ=255)
cTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑a > 2:2326490/1‑93 (MQ=255)
cTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑a > 1:5244410/1‑93 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aa > 2:2027251/1‑93 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aa < 1:472365/93‑1 (MQ=255)
tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aa < 1:3256673/93‑1 (MQ=255)
agAGCAGGCGATTAACGCTCGTTGGTGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aaa < 2:1074239/92‑1 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aaaa < 1:2285683/93‑2 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aaaa < 2:4163007/93‑2 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTC‑aaaa > 2:2686103/1‑92 (MQ=255)
gAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTC‑aaaa > 2:4295461/1‑92 (MQ=255)
aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTT‑aaaag > 1:3192920/1‑91 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aaaaggc > 2:1634344/1‑89 (MQ=255)
cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑aaaaggc < 2:5700231/93‑5 (MQ=255)
ggCGATTAACGCTCGTTGGGGCTATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCa < 1:6112872/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCa < 1:1506873/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCa < 2:4951341/93‑1 (MQ=255)
ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCa < 1:5722761/93‑1 (MQ=255)
gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAt < 2:1599366/93‑1 (MQ=255)
gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAt > 2:4819971/1‑93 (MQ=255)
cGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATg < 2:2169652/93‑1 (MQ=255)
cGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATg < 1:4269990/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATgc < 1:2157699/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATgc < 2:5492824/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATgc > 1:5172308/1‑93 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATgc < 1:3756419/93‑1 (MQ=255)
gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATgc < 1:2478711/93‑1 (MQ=255)
aTTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCAcgcg > 2:1385819/1‑93 (MQ=255)
aTTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATgcg > 1:1442960/1‑93 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATgcgc > 1:5228684/1‑93 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATgcgc > 1:5071661/1‑93 (MQ=255)
ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAAGCCATgcgc > 2:5994215/1‑93 (MQ=255)
aaCGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTg < 2:2092422/93‑1 (MQ=255)
aCGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTgg < 2:2390309/93‑1 (MQ=255)
cGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTTC‑AAAAGACATGCGCTTGa > 2:557163/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGaa < 2:1607153/93‑1 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGaa > 1:2885126/1‑93 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGaa < 1:2474865/93‑1 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGaa < 1:868213/93‑1 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGaa < 1:926211/93‑1 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑g < 1:5707178/93‑1 (MQ=255)
cGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑gcg < 2:4574996/93‑3 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGG‑GGTTCAAAAGGCCATGCGCTGGAA‑gcgg > 1:4813315/1‑90 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 1:4623304/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 2:3083575/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 2:3097571/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑gcgg < 2:3282794/93‑4 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAAGCCATGCGCTGGAA‑gcgg > 1:4041485/1‑90 (MQ=255)
ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑gcggt < 2:3738063/93‑5 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a > 1:882407/1‑93 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a < 2:722109/93‑1 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a > 2:2003960/1‑93 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GGTTCAAAAGGGCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑a > 2:4689360/1‑93 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aa < 2:2103880/93‑1 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:5143571/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:219070/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:4328059/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga < 2:3925526/93‑3 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga > 1:4242722/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aaga > 1:3268770/1‑91 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCACTGGCTGGAAGG‑GGTGGCG‑‑‑‑aaaa > 1:1410130/1‑91 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aagaa > 1:2474435/1‑90 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aagaaa < 1:3617388/93‑5 (MQ=255)
cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑aagaaa < 2:2759649/93‑5 (MQ=255)
tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt < 1:3067422/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt > 2:5367497/1‑93 (MQ=255)
cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt < 1:3423220/93‑2 (MQ=255)
cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt > 2:2690426/1‑92 (MQ=255)
cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑ttt > 2:2607369/1‑92 (MQ=255)
tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 2:4708075/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg < 1:1051706/93‑3 (MQ=255)
tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:5951006/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:5995372/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 2:1156237/1‑91 (MQ=255)
ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttgg > 2:630739/1‑90 (MQ=255)
tGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 1:100493/93‑1 (MQ=255)
tGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 2:349093/93‑1 (MQ=255)
tGGCGGGCGGC‑GTTTCAAAAAGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa > 2:6045798/1‑93 (MQ=255)
ggcgggcgGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 2:2148939/93‑1 (MQ=255)
ggcgggcgGC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCG‑‑‑‑AAGAAACCG‑GGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 2:1686766/93‑1 (MQ=255)
gcgggcggC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg < 2:2236559/93‑1 (MQ=255)
gcgggcggC‑GTGTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATg < 2:790947/93‑1 (MQ=255)
cgggcggC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGa < 1:5478423/93‑1 (MQ=255)
gggcggC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 1:2635131/93‑1 (MQ=255)
gggcggC‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 2:3445771/93‑1 (MQ=255)
ggcggc‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 2:2772791/93‑1 (MQ=255)
ggcggc‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 1:4957056/93‑1 (MQ=255)
ggcggc‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac > 1:3993000/1‑93 (MQ=255)
ggcggc‑GTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 2:331868/93‑1 (MQ=255)
gcggc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg > 1:4814006/1‑93 (MQ=255)
gcggc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacg < 1:2957114/93‑1 (MQ=255)
ggc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAacgac > 2:5773184/1‑93 (MQ=255)
ggc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 2:4498313/93‑1 (MQ=255)
ggc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac > 2:5281397/1‑93 (MQ=255)
ggc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 2:4279944/93‑1 (MQ=255)
ggc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac > 2:3119511/1‑93 (MQ=255)
gc‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg > 2:4300379/1‑93 (MQ=255)
c‑gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc > 2:5938791/1‑93 (MQ=255)
gTTTCAAAAGGCCATGCGCTGGAA‑GCGGTGGCGAAGAAA‑‑‑‑‑CTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc < 1:4418546/93‑1 (MQ=255)
|
GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAA‑G‑GCTGGCG‑‑‑‑AA‑‑‑‑‑CT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCC > NC_000913/4008280‑4008449
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008282‑4008458
|
TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AA < SRR4302533.475190/94‑1 (MQ=60)
TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AA < SRR4302533.3276758/94‑1 (MQ=60)
GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTT‑A‑AAAG > SRR4302533.3212560/1‑94 (MQ=60)
GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAAG < SRR4302533.2299831/94‑1 (MQ=60)
GAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAAG < SRR4302533.5679763/94‑1 (MQ=60)
AGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGTGTTTC‑ATAAGG > SRR4302533.781467/1‑94 (MQ=60)
CAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAaagcc > SRR4302533.4589789/1‑89 (MQ=60)
AGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTC‑A‑AAaagcca > SRR4302533.38905/1‑88 (MQ=60)
GGCGATTAACGCTCGTTGGGGCTATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCAT < SRR4302533.6149765/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCAT < SRR4302533.1515956/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCAT < SRR4302533.5757314/94‑1 (MQ=60)
GGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCAT < SRR4302533.4482448/94‑1 (MQ=60)
GCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAaatcaagg > SRR4302533.1434716/1‑86 (MQ=60)
GCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTC‑A‑AAaggccctg > SRR4302533.1714856/1‑86 (MQ=60)
CGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGC < SRR4302533.4295693/94‑1 (MQ=60)
CGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGC > SRR4302533.5203517/1‑94 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCG > SRR4302533.394157/1‑94 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCG < SRR4302533.2170981/94‑1 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCG < SRR4302533.2493997/94‑1 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCG < SRR4302533.3779444/94‑1 (MQ=60)
GATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCG > SRR4302533.1451666/1‑94 (MQ=60)
ATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGC > SRR4302533.5260139/1‑94 (MQ=60)
ATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAAGCCATGCGC > SRR4302533.5102315/1‑94 (MQ=60)
AACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAaagccacgagctgg > SRR4302533.4806168/1‑80 (MQ=60)
CGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAA < SRR4302533.5075433/94‑1 (MQ=60)
CGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAA‑AAGGCCATGCGCTGGAA > SRR4302533.2902864/1‑94 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAG < SRR4302533.931646/94‑1 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAG < SRR4302533.2490125/94‑1 (MQ=60)
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAG < SRR4302533.873300/94‑1 (MQ=60)
CTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAG‑C < SRR4302533.5741651/94‑1 (MQ=60)
ATCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTC‑A‑AAaagccctgcgctggaagc > SRR4302533.777670/1‑76 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTCAA‑AAGGCCATGCGCTGGAAGcgg > SRR4302533.4842487/1‑91 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcgg < SRR4302533.3215368/94‑4 (MQ=60)
CGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCAA‑AAAGCCATGCGCTGGAAGcgg > SRR4302533.4066083/1‑91 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggt < SRR4302533.4651328/94‑5 (MQ=60)
GTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggt < SRR4302533.2032402/94‑5 (MQ=60)
TTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtg > SRR4302533.3893437/1‑89 (MQ=60)
TGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtgg < SRR4302533.4178070/94‑7 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggc > SRR4302533.2294013/1‑87 (MQ=60)
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggc < SRR4302533.2958628/94‑8 (MQ=60)
GGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcg < SRR4302533.3340360/94‑9 (MQ=60)
GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑A > SRR4302533.887590/1‑94 (MQ=60)
GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑A < SRR4302533.5337889/94‑1 (MQ=60)
CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcgggggggaag > SRR4302533.1620270/1‑83 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaaga > SRR4302533.4268339/1‑82 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaaga > SRR4302533.3288937/1‑82 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAaggccactggctggaaggggtggcgaaaa > SRR4302533.1418657/1‑65 (MQ=60)
GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTTCGA‑AAGGCCATGCGCTGGAAGcgggggcggaga > SRR4302533.5631381/1‑82 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcggagaa > SRR4302533.1150890/1‑81 (MQ=60)
ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaa > SRR4302533.2489694/1‑81 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTCAA‑AAAGCCATGCGCTGGAAGcggtggcgaagaaac > SRR4302533.4661568/1‑79 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaac > SRR4302533.4570836/1‑79 (MQ=60)
CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaac < SRR4302533.3639640/94‑16 (MQ=60)
GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcgggggcgaagaaact > SRR4302533.1959643/1‑78 (MQ=60)
CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTCAA‑AAGGCCATGCGCTGGAAG‑Ggggggggaagcaaccg > SRR4302533.4074910/1‑78 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.2181474/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgg > SRR4302533.5196848/1‑76 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.247755/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.1419427/94‑19 (MQ=60)
GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgg < SRR4302533.4252206/94‑19 (MQ=60)
TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactggg < SRR4302533.1253243/94‑20 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggc > SRR4302533.2600926/1‑74 (MQ=60)
CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcgggggcgaagaaactgggc > SRR4302533.2040920/1‑74 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct > SRR4302533.4416745/1‑73 (MQ=60)
AACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggct > SRR4302533.4062766/1‑73 (MQ=60)
CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagc > SRR4302533.2545756/1‑68 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcc > SRR4302533.4012320/1‑67 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcc < SRR4302533.1574414/94‑28 (MQ=60)
AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctaaagcc > SRR4302533.214174/1‑67 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct > SRR4302533.1757581/1‑66 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302533.4606144/94‑29 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302533.6253719/94‑29 (MQ=60)
GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTGCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcct < SRR4302533.2381622/94‑29 (MQ=60)
TTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctg > SRR4302533.47652/1‑65 (MQ=60)
TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302533.3195947/1‑64 (MQ=60)
TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga > SRR4302533.2601426/1‑64 (MQ=60)
TTCTCTACCTTAACCTGTCCGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctga < SRR4302533.2760742/94‑31 (MQ=60)
TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaa < SRR4302533.5359189/94‑32 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaag > SRR4302533.5244329/1‑62 (MQ=60)
CTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaaatgggctacagcctgaag > SRR4302533.2848517/1‑62 (MQ=60)
TCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaagg < SRR4302533.4555648/94‑34 (MQ=60)
ACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggatt > SRR4302533.4602454/1‑58 (MQ=60)
CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGaaagcggtggcgaagaaactgggctacagcctgaaggattg < SRR4302533.396174/94‑42 (MQ=60)
CCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattg < SRR4302533.272655/94‑38 (MQ=60)
CTTAGCCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302533.674543/94‑39 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCTCTGGAAGcggtggcgaagaaactggtctacagcctgaaggattgt > SRR4302533.3921045/1‑56 (MQ=60)
CTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgt < SRR4302533.1374313/94‑39 (MQ=60)
TTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgta < SRR4302533.4840798/94‑40 (MQ=60)
ACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagactgaaggattgtattg > SRR4302533.7657/1‑52 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302533.2486450/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302533.4946983/94‑45 (MQ=60)
CTGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcg < SRR4302533.3164330/94‑45 (MQ=60)
TGTCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgt > SRR4302533.3979667/1‑49 (MQ=60)
TCTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgttt < SRR4302533.3086262/94‑48 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302533.6031684/1‑46 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg > SRR4302533.5987001/1‑46 (MQ=60)
CTGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttg < SRR4302533.3444365/94‑49 (MQ=60)
TGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactggggtacagcctgaaggattgtattgcgtttgg > SRR4302533.1478632/1‑45 (MQ=60)
TGGAAGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttgg < SRR4302533.1057898/94‑50 (MQ=60)
AGTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgac < SRR4302533.714606/94‑54 (MQ=60)
GTGATGGCGGGCGGCGTTTCAA‑AAGGCCATGCGCTGGAAGcggtggcgaagaaactgggctacagcctgaaggattgtattgcgtttggtgacg < SRR4302533.2403475/94‑55 (MQ=60)
tcaA‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA > SRR4302533.4854775/4‑94 (MQ=16)
tcaA‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA > SRR4302533.4854776/4‑94 (MQ=16)
caA‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.5801257/92‑1 (MQ=18)
caA‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302533.5860484/3‑94 (MQ=18)
caA‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.3455385/92‑1 (MQ=18)
caA‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.1001159/92‑1 (MQ=18)
caA‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302533.4581160/92‑1 (MQ=18)
A‑A‑AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302533.292135/1‑94 (MQ=19)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302533.6229189/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302533.2953665/94‑1 (MQ=21)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302533.2757655/1‑94 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302533.3758008/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302533.1204246/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302533.49854/1‑94 (MQ=23)
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TGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑A‑AAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008282‑4008458
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
