Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,043,403	A→G	H260H (CAT→CAC)	yihG ←	putative endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,043,403	0	A	G	100.0%	938.1 / NA	286	H260H (CAT→CAC)	yihG	putative endonuclease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (128/158); total (128/158)

Only 100 of 295 total aligned reads displayed.

TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAG  >  NC_000913/4043313‑4043492

tGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTg                                                                                         <  2:2422865/93‑1 (MQ=255)

   gTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTAc                                                                                      <  1:1072033/93‑1 (MQ=255)

     tCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGa                                                                                    >  1:957074/1‑93 (MQ=255)

      cAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGAc                                                                                   <  2:765359/93‑1 (MQ=255)

      cAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGAc                                                                                   <  1:3248477/93‑1 (MQ=255)

        gCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACaa                                                                                 >  1:1713739/1‑93 (MQ=255)

        gCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACaa                                                                                 <  1:2059587/93‑1 (MQ=255)

         ccATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAt                                                                                >  2:1527379/1‑93 (MQ=255)

          cATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATc                                                                               <  2:4898057/93‑1 (MQ=255)

            ttGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCcg                                                                             >  1:4123963/1‑93 (MQ=255)

            ttGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCcg                                                                             >  1:5636867/1‑93 (MQ=255)

              gCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCcgcg                                                                           <  2:3726647/93‑1 (MQ=255)

                tGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTc                                                                         <  2:4737314/93‑1 (MQ=255)

                tGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTc                                                                         >  1:4677162/1‑93 (MQ=255)

                  aaaaTGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCat                                                                       >  1:48864/1‑92 (MQ=255)

                   aaaTGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGt                                                                      <  1:490940/93‑1 (MQ=255)

                    aaTGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGtt                                                                     <  1:4019615/93‑1 (MQ=255)

                      tGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTa                                                                   >  2:2023200/1‑93 (MQ=255)

                       ggCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTAc                                                                  <  2:6170703/93‑1 (MQ=255)

                       ggCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTAc                                                                  <  1:2770094/93‑1 (MQ=255)

                       ggCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTAc                                                                  <  2:5295344/93‑1 (MQ=255)

                       ggCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTAc                                                                  >  2:1077858/1‑93 (MQ=255)

                         cgcTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCg                                                                >  2:6014557/1‑93 (MQ=255)

                          gcTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGc                                                               >  2:126507/1‑93 (MQ=255)

                          gcTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGc                                                               >  1:5996272/1‑93 (MQ=255)

                              aaaGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTaa                                                           <  2:1896692/93‑1 (MQ=255)

                               aaGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAc                                                          <  2:3285339/93‑1 (MQ=255)

                                aGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACa                                                         <  2:2095309/93‑1 (MQ=255)

                                 gCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACat                                                        >  2:3040415/1‑93 (MQ=255)

                                 gCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACat                                                        >  1:3598694/1‑93 (MQ=255)

                                  cTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACata                                                       <  1:3760508/93‑1 (MQ=255)

                                  cTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACata                                                       <  2:2974416/93‑1 (MQ=255)

                                   ttttGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACatat                                                      >  2:3670735/1‑93 (MQ=255)

                                   ttttGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACatat                                                      <  1:2721293/93‑1 (MQ=255)

                                    tttGTGATTGATGTAGTCGCCATGTAACTCATCGGAAATAGGCTAAAAACCCACGTGTACGACAACCCGCGTCAGTTTACCGCTTAACATATc                                                     <  2:5842181/93‑1 (MQ=255)

                                     ttGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCg                                                    <  1:3180702/93‑1 (MQ=255)

                                        tCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaag                                                 >  2:5446438/1‑93 (MQ=255)

                                         cATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaaga                                                >  2:1976388/1‑93 (MQ=255)

                                         cATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaaga                                                <  2:4202164/93‑1 (MQ=255)

                                         cATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCgaaga                                                >  1:4300682/1‑93 (MQ=255)

                                           ttGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAc                                              <  2:3333829/93‑1 (MQ=255)

                                           ttGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAc                                              <  2:6283865/93‑1 (MQ=255)

                                           ttGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAc                                              <  1:3104896/93‑1 (MQ=255)

                                            tGATGTAAGCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACg                                             <  2:3751678/93‑1 (MQ=255)

                                             gATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACgg                                            >  2:4498909/1‑93 (MQ=255)

                                             gATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACgg                                            >  2:4597970/1‑93 (MQ=255)

                                             gATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACgg                                            >  2:5662160/1‑93 (MQ=255)

                                               tGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTAAGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCt                                          >  2:1753245/1‑93 (MQ=255)

                                                 tAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGa                                        <  2:4516131/93‑1 (MQ=255)

                                                 tAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTAAGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGa                                        <  1:1020496/93‑1 (MQ=255)

                                                  aGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGAc                                       <  1:2331201/93‑1 (MQ=255)

                                                   gTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACg                                      >  1:4478463/1‑93 (MQ=255)

                                                    tCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACgg                                     >  1:1820589/1‑93 (MQ=255)

                                                     ccccATTTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGAAAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGt                                    <  2:3590730/91‑1 (MQ=255)

                                                      gCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGtt                                   >  1:3855216/1‑93 (MQ=255)

                                                       ccATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTa                                  >  1:745120/1‑93 (MQ=255)

                                                       ccATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTa                                  >  2:2889761/1‑93 (MQ=255)

                                                        cATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAt                                 <  1:2402445/93‑1 (MQ=255)

                                                        cATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGAAAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAt                                 >  1:3376438/1‑93 (MQ=255)

                                                         aTGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAtt                                <  1:1337294/93‑1 (MQ=255)

                                                         aTGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAtt                                <  2:1352771/93‑1 (MQ=255)

                                                         aTGTAACTCATCGGCAATAGACTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAtt                                <  1:6304335/93‑1 (MQ=255)

                                                          tGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTg                               >  1:2141041/1‑93 (MQ=255)

                                                          tGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTg                               >  1:200899/1‑93 (MQ=255)

                                                           gTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAACCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGt                              >  1:3377925/1‑93 (MQ=255)

                                                            tAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTc                             <  2:2048482/93‑1 (MQ=255)

                                                            tAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTc                             <  2:5527049/93‑1 (MQ=255)

                                                            tAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCATCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTc                             <  1:6143210/93‑1 (MQ=255)

                                                             aaCTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTcc                            <  2:1609111/93‑1 (MQ=255)

                                                             aaCTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTcc                            >  2:5726182/1‑93 (MQ=255)

                                                              aCTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCg                           >  2:5107274/1‑93 (MQ=255)

                                                              aCTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCg                           >  1:6255317/1‑93 (MQ=255)

                                                               cTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCgg                          >  1:4452642/1‑93 (MQ=255)

                                                                tCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGGTATTGTCCGGa                         >  2:5796031/1‑93 (MQ=255)

                                                                 cATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGAt                        <  2:2486200/93‑1 (MQ=255)

                                                                   tCGGCAATAGGCTGTAAATCTACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATaa                      <  2:6100952/93‑1 (MQ=255)

                                                                   tCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATaa                      >  2:3500803/1‑93 (MQ=255)

                                                                      gCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAacac                   <  2:5162326/93‑1 (MQ=255)

                                                                       cAATAGGCTGTAAATCCACGTGTACTACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAAcaca                  >  2:1158931/1‑93 (MQ=255)

                                                                       cAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAAcaca                  >  1:3073377/1‑93 (MQ=255)

                                                                       cAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAAcaca                  >  2:3828319/1‑93 (MQ=255)

                                                                       cAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAAcaca                  <  1:859996/93‑1 (MQ=255)

                                                                        aaTAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAg                 <  2:4386433/93‑1 (MQ=255)

                                                                         aTAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTTTTGTCCGGATAACACAGc                >  1:4827609/1‑93 (MQ=255)

                                                                         aTAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGc                >  1:5147095/1‑93 (MQ=255)

                                                                          tAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCg               >  1:1139867/1‑93 (MQ=255)

                                                                           aGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGt              >  2:230256/1‑93 (MQ=255)

                                                                             gCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTaa            >  2:3535846/1‑93 (MQ=255)

                                                                             gCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTaa            >  1:1171469/1‑93 (MQ=255)

                                                                              cTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAAc           <  2:2761110/93‑1 (MQ=255)

                                                                               tGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACa          >  1:1538106/1‑93 (MQ=255)

                                                                                gTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCTAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAt         <  2:1437954/93‑1 (MQ=255)

                                                                                 tAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAtt        >  2:3917782/1‑93 (MQ=255)

                                                                                  aaaTCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTa       <  1:2812675/93‑1 (MQ=255)

                                                                                  aaaTCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTa       <  1:5477621/93‑1 (MQ=255)

                                                                                   aaTCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTaa      <  2:4774320/93‑1 (MQ=255)

                                                                                     tCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGc    <  2:4059687/93‑1 (MQ=255)

                                                                                      ccACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCa   <  2:5976404/93‑1 (MQ=255)

                                                                                       cacgTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAg  <  2:2649200/93‑1 (MQ=255)

                                                                                       cacgTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAg  >  1:5805017/1‑93 (MQ=255)

TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAG  >  NC_000913/4043313‑4043492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTTA  >  NC_000913/4043310‑4043496

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACG                                                                                               >  SRR4302533.4718468/1‑94 (MQ=60)

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACG                                                                                               <  SRR4302533.4795227/94‑1 (MQ=60)

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACG                                                                                               <  SRR4302533.1338233/94‑1 (MQ=60)

   TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGT                                                                                            >  SRR4302533.3915500/1‑94 (MQ=60)

   TGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGT                                                                                            >  SRR4302533.1487457/1‑94 (MQ=60)

      GTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACG                                                                                         <  SRR4302533.1078349/94‑1 (MQ=60)

       TTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGA                                                                                        >  SRR4302533.962703/1‑94 (MQ=60)

         CAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACA                                                                                      <  SRR4302533.3268507/94‑1 (MQ=60)

         CAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACA                                                                                      >  SRR4302533.4444432/1‑94 (MQ=60)

         CAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACA                                                                                      <  SRR4302533.6066280/94‑1 (MQ=60)

          AGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAA                                                                                     >  SRR4302533.1724126/1‑94 (MQ=60)

           GCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAT                                                                                    >  SRR4302533.5537624/1‑94 (MQ=60)

           GCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAT                                                                                    <  SRR4302533.2072286/94‑1 (MQ=60)

           GCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAT                                                                                    <  SRR4302533.4917228/94‑1 (MQ=60)

             CATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCC                                                                                  <  SRR4302533.603732/94‑1 (MQ=60)

              ATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCG                                                                                 >  SRR4302533.4483682/1‑94 (MQ=60)

              ATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCG                                                                                 >  SRR4302533.4148999/1‑94 (MQ=60)

              ATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCG                                                                                 >  SRR4302533.5670951/1‑94 (MQ=60)

              ATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCG                                                                                 <  SRR4302533.201611/94‑1 (MQ=60)

                  CTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTC                                                                             >  SRR4302533.4705506/1‑94 (MQ=60)

                  CTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTC                                                                             >  SRR4302533.1105357/1‑94 (MQ=60)

                   TGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCA                                                                            >  SRR4302533.2353387/1‑94 (MQ=60)

                   TGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCA                                                                            >  SRR4302533.5427901/1‑94 (MQ=60)

                   TGAAAAGGGCGCTTAAAGCTTTTGTCATTGAGGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCA                                                                            <  SRR4302533.3095019/94‑1 (MQ=60)

                    GAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAT                                                                           >  SRR4302533.49202/1‑94 (MQ=60)

                      AAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTT                                                                         <  SRR4302533.493874/94‑1 (MQ=60)

                      AAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTT                                                                         <  SRR4302533.790493/94‑1 (MQ=60)

                      AAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTT                                                                         >  SRR4302533.4062686/1‑94 (MQ=60)

                       AATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTT                                                                        <  SRR4302533.4044093/94‑1 (MQ=60)

                        ATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTA                                                                       <  SRR4302533.3142319/94‑1 (MQ=60)

                        ATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTA                                                                       >  SRR4302533.1174226/1‑94 (MQ=60)

                          GGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACC                                                                     <  SRR4302533.2787092/94‑1 (MQ=60)

                            CGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGC                                                                   >  SRR4302533.3440760/1‑94 (MQ=60)

                            CGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGC                                                                   >  SRR4302533.6293365/1‑94 (MQ=60)

                            CGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGC                                                                   >  SRR4302533.6032588/1‑94 (MQ=60)

                            CGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACAGC                                                                   >  SRR4302533.2537505/1‑94 (MQ=60)

                             GCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCT                                                                  >  SRR4302533.3046037/1‑94 (MQ=60)

                             GCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCT                                                                  <  SRR4302533.429036/94‑1 (MQ=60)

                             GCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCT                                                                  <  SRR4302533.900893/94‑1 (MQ=60)

                              CTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTT                                                                 >  SRR4302533.4700037/1‑94 (MQ=60)

                              CTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTT                                                                 >  SRR4302533.3152776/1‑94 (MQ=60)

                              CTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTT                                                                 >  SRR4302533.1614764/1‑94 (MQ=60)

                              CTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTT                                                                 >  SRR4302533.5760090/1‑94 (MQ=60)

                               TTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTA                                                                >  SRR4302533.1749551/1‑94 (MQ=60)

                                 AAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAC                                                              >  SRR4302533.5966248/1‑94 (MQ=60)

                                 AAAGCTTTTGTCATTGATGTAGGCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAAC                                                              <  SRR4302533.2115128/94‑1 (MQ=60)

                                   AGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACAT                                                            >  SRR4302533.3620833/1‑94 (MQ=60)

                                     CTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATAT                                                          <  SRR4302533.3783557/94‑1 (MQ=60)

                                      TTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATC                                                         <  SRR4302533.2737995/94‑1 (MQ=60)

                                      TTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATC                                                         <  SRR4302533.1097081/94‑1 (MQ=60)

                                       TTTGTCATTGATGTAGTCGCCATGTAACTCATCTGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCT                                                        >  SRR4302533.3123713/1‑94 (MQ=60)

                                       TTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCG                                                        <  SRR4302533.3397885/94‑1 (MQ=60)

                                        TTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGA                                                       <  SRR4302533.3200267/94‑1 (MQ=60)

                                           TCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGA                                                    >  SRR4302533.4326547/1‑94 (MQ=60)

                                           TCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGA                                                    <  SRR4302533.1454389/94‑1 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAA                                                   <  SRR4302533.831294/94‑1 (MQ=60)

                                            CATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAA                                                   <  SRR4302533.3383837/94‑1 (MQ=60)

                                             ATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  <  SRR4302533.5067006/94‑1 (MQ=60)

                                             ATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  <  SRR4302533.3002584/94‑1 (MQ=60)

                                             ATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTCTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAAC                                                  <  SRR4302533.3403819/94‑1 (MQ=60)

                                              TTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACG                                                 <  SRR4302533.1808562/94‑1 (MQ=60)

                                              TTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACG                                                 <  SRR4302533.3123982/94‑1 (MQ=60)

                                              TTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACG                                                 <  SRR4302533.4847973/94‑1 (MQ=60)

                                               TGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGG                                                >  SRR4302533.973970/1‑94 (MQ=60)

                                                 ATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCT                                              <  SRR4302533.2053627/94‑1 (MQ=60)

                                                  TGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTG                                             >  SRR4302533.5131373/1‑94 (MQ=60)

                                                  TGTAGACGCCCTGTAACTCATGGGCAATAGGCTGTAAATCCTCGTGTACGACGATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTG                                             <  SRR4302533.3003811/94‑1 (MQ=60)

                                                    TAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGAC                                           <  SRR4302533.1253696/94‑1 (MQ=60)

                                                    TAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTAAGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGAC                                           <  SRR4302533.1026491/94‑1 (MQ=60)

                                                     AGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACG                                          <  SRR4302533.3677153/94‑1 (MQ=60)

                                                     AGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACG                                          >  SRR4302533.4505559/1‑94 (MQ=60)

                                                     AGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACG                                          <  SRR4302533.2345634/94‑1 (MQ=60)

                                                      GTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGG                                         >  SRR4302533.1831710/1‑94 (MQ=60)

                                                       TCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGT                                        <  SRR4302533.2369375/94‑1 (MQ=60)

                                                       TCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGT                                        <  SRR4302533.4404696/94‑1 (MQ=60)

                                                        CGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTT                                       <  SRR4302533.1065941/94‑1 (MQ=60)

                                                        CGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTT                                       >  SRR4302533.3878758/1‑94 (MQ=60)

                                                         GCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTA                                      >  SRR4302533.749505/1‑94 (MQ=60)

                                                         GCCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTA                                      >  SRR4302533.2129056/1‑94 (MQ=60)

                                                          CCATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGAAAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTAT                                     >  SRR4302533.3397287/1‑94 (MQ=60)

                                                           CATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATT                                    <  SRR4302533.2417283/94‑1 (MQ=60)

                                                            ATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTG                                   <  SRR4302533.1345319/94‑1 (MQ=60)

                                                            ATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTG                                   <  SRR4302533.4769308/94‑1 (MQ=60)

                                                            ATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTG                                   >  SRR4302533.2154237/1‑94 (MQ=60)

                                                            ATGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTG                                   >  SRR4302533.202173/1‑94 (MQ=60)

                                                            ATGTAACTCATCGGCAATAGACTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTG                                   <  SRR4302533.6342032/94‑1 (MQ=60)

                                                             TGTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAAACCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGT                                  >  SRR4302533.3398781/1‑94 (MQ=60)

                                                              GTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTC                                 <  SRR4302533.6283046/94‑1 (MQ=60)

                                                              GTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTC                                 >  SRR4302533.1262087/1‑94 (MQ=60)

                                                              GTAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTC                                 >  SRR4302533.408201/1‑94 (MQ=60)

                                                               TAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCC                                <  SRR4302533.3797653/94‑1 (MQ=60)

                                                               TAACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCATCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCC                                <  SRR4302533.6180202/94‑1 (MQ=60)

                                                                ACCTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCG                               <  SRR4302533.1173020/94‑1 (MQ=60)

                                                                AACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCG                               >  SRR4302533.6292725/1‑94 (MQ=60)

                                                                 ACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGG                              >  SRR4302533.4479562/1‑94 (MQ=60)

                                                                 ACTCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGG                              <  SRR4302533.2249013/94‑1 (MQ=60)

                                                                   TCATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGCCGGTTATTGTCCGGGT                            >  SRR4302533.69088/1‑94 (MQ=60)

                                                                    CATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATA                           >  SRR4302533.4869763/1‑94 (MQ=60)

                                                                     ATCGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAA                          <  SRR4302533.4649362/94‑1 (MQ=60)

                                                                       CGGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACA                        <  SRR4302533.658430/94‑1 (MQ=60)

                                                                        GGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACAC                       <  SRR4302533.3985332/94‑1 (MQ=60)

                                                                        GGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACAC                       <  SRR4302533.3226750/94‑1 (MQ=60)

                                                                        GGCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACAC                       <  SRR4302533.2819785/94‑1 (MQ=60)

                                                                         GCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACA                      <  SRR4302533.3854034/94‑1 (MQ=60)

                                                                         GCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACA                      >  SRR4302533.3092242/1‑94 (MQ=60)

                                                                         GCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACA                      <  SRR4302533.4154551/94‑1 (MQ=60)

                                                                         GCAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACA                      <  SRR4302533.1867884/94‑1 (MQ=60)

                                                                          CAATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAG                     <  SRR4302533.865036/94‑1 (MQ=60)

                                                                           AATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTTTTGTCCGGATAACACAGC                    >  SRR4302533.4856864/1‑94 (MQ=60)

                                                                           AATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGC                    >  SRR4302533.5178198/1‑94 (MQ=60)

                                                                           AATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGC                    <  SRR4302533.3233138/94‑1 (MQ=60)

                                                                           AATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGC                    >  SRR4302533.4884471/1‑94 (MQ=60)

                                                                            ATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCG                   <  SRR4302533.202573/94‑1 (MQ=60)

                                                                            ATAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCG                   >  SRR4302533.1146649/1‑94 (MQ=60)

                                                                             attgctggtAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGT                  <  SRR4302533.1461156/85‑1 (MQ=60)

                                                                             TAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTTTTGTCCGGATAACACAGCGT                  >  SRR4302533.3279921/1‑94 (MQ=60)

                                                                             TAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGT                  >  SRR4302533.2739150/1‑94 (MQ=60)

                                                                             TAGGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGA                  >  SRR4302533.919637/1‑94 (MQ=60)

                                                                               GGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAA                >  SRR4302533.2798546/1‑94 (MQ=60)

                                                                               GGCTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAA                >  SRR4302533.1178502/1‑94 (MQ=60)

                                                                                 CTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACA              >  SRR4302533.1547345/1‑94 (MQ=60)

                                                                                 CTGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACA              <  SRR4302533.5773767/94‑1 (MQ=60)

                                                                                  TGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAT             >  SRR4302533.5276040/1‑94 (MQ=60)

                                                                                  TGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAT             <  SRR4302533.492651/94‑1 (MQ=60)

                                                                                  TGTAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACAT             >  SRR4302533.3710791/1‑94 (MQ=60)

                                                                                    TAAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTA           <  SRR4302533.590980/94‑1 (MQ=60)

                                                                                    TAAATCCACGTGGACGACAAGCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTA           <  SRR4302533.2766206/94‑1 (MQ=60)

                                                                                     AAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAA          <  SRR4302533.5510636/94‑1 (MQ=60)

                                                                                     AAATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAA          <  SRR4302533.2829988/94‑1 (MQ=60)

                                                                                       ATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGC        <  SRR4302533.1567747/94‑1 (MQ=60)

                                                                                       ATCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGC        <  SRR4302533.6191432/94‑1 (MQ=60)

                                                                                        TCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCA       <  SRR4302533.2256547/94‑1 (MQ=60)

                                                                                        TCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCA       >  SRR4302533.4481020/1‑94 (MQ=60)

                                                                                        TCCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCA       <  SRR4302533.2687256/94‑1 (MQ=60)

                                                                                         CCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAG      >  SRR4302533.5840072/1‑94 (MQ=60)

                                                                                         CCACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAG      <  SRR4302533.5581674/94‑1 (MQ=60)

                                                                                           ACGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTT    <  SRR4302533.1837414/94‑1 (MQ=60)

                                                                                            CGTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTT   <  SRR4302533.5968773/94‑1 (MQ=60)

                                                                                             GTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATATCACAGCCTAACATTAAGCAGTTTT  >  SRR4302533.1396022/1‑94 (MQ=60)

                                                                                             GTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTTA  >  SRR4302533.1858777/1‑94 (MQ=60)

                                                                                             GTGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTTA  >  SRR4302533.3783408/1‑94 (MQ=60)

CAATGAGTTCAGCCATTGCTGAAAATGGCGCTTAAAGCTTTTGTCATTGATGTAGTCGCCATGTAACTCATCGGCAATAGGCTGTAAATCCACATGTACGACAATCCGCGTCAGTTTACCGCTTAACATATCGAAGAACGGCTGACGGTTATTGTCCGGATAACACAGCGTAACATTAAGCAGTTTA  >  NC_000913/4043310‑4043496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`