Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,043,629	A→G	I185T (ATT→ACT)	yihG ←	putative endonuclease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,043,629	0	A	G	100.0%	829.1 / NA	253	I185T (ATT→ACT)	yihG	putative endonuclease
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/137); total (116/137)

Only 100 of 266 total aligned reads displayed.

GCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA  >  NC_000913/4043539‑4043718

gccgccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtg                                                                                         >  1:1893107/1‑93 (MQ=255)

 ccgccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtgg                                                                                        <  1:369160/93‑1 (MQ=255)

  cgccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggt                                                                                       <  2:3104628/93‑1 (MQ=255)

   gccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAgtggtg                                                                                      >  1:5366620/1‑93 (MQ=255)

    ccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggtgg                                                                                     >  1:517963/1‑93 (MQ=255)

    ccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggtgg                                                                                     >  2:4328995/1‑93 (MQ=255)

    ccTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggtgg                                                                                     >  1:2115701/1‑93 (MQ=255)

      tttGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAgtggtggtg                                                                                   <  2:4306704/93‑1 (MQ=255)

      tttGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAgtggtggtg                                                                                   >  2:4234179/1‑93 (MQ=255)

      tttGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAgtggtggtg                                                                                   >  1:2352591/1‑93 (MQ=255)

       ttGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGtggtggtgg                                                                                  <  1:4597970/93‑1 (MQ=255)

        tggtggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTggg                                                                                 >  1:2211298/1‑93 (MQ=255)

           tggCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATg                                                                              <  2:2203153/93‑1 (MQ=255)

             gCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCa                                                                            <  1:5716597/93‑1 (MQ=255)

             gCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCa                                                                            <  2:1319901/93‑1 (MQ=255)

              caacaaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAg                                                                           <  1:2386380/93‑1 (MQ=255)

              caacaaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAg                                                                           >  1:277305/1‑93 (MQ=255)

              caacaaGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAg                                                                           >  1:5901142/1‑93 (MQ=255)

                    gTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGaaa                                                                     >  1:642972/1‑93 (MQ=255)

                      tttGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACt                                                                   >  1:350725/1‑93 (MQ=255)

                        tGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACttt                                                                 <  2:1135966/93‑1 (MQ=255)

                        tGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTGGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACttt                                                                 <  1:3535846/93‑1 (MQ=255)

                           aaaGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTca                                                              <  1:2023200/93‑1 (MQ=255)

                              gtggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACaa                                                           <  1:4722244/93‑1 (MQ=255)

                              gtggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACaa                                                           <  1:3828319/93‑1 (MQ=255)

                                ggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGa                                                         >  1:1061537/1‑93 (MQ=255)

                                ggagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGa                                                         >  2:6262008/1‑93 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        >  2:2906132/1‑93 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        <  1:4350752/93‑1 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        <  2:3419631/93‑1 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        >  2:1561488/1‑93 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        <  2:3270249/93‑1 (MQ=255)

                                 gagtggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGaa                                                        <  2:5416402/93‑1 (MQ=255)

                                    tggGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGc                                                     >  1:3962403/1‑93 (MQ=255)

                                     gggTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGcc                                                    <  2:2781459/93‑1 (MQ=255)

                                      ggTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCg                                                   <  2:4478463/93‑1 (MQ=255)

                                      ggTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCg                                                   >  2:3964574/1‑93 (MQ=255)

                                       gTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGa                                                  <  1:2954869/93‑1 (MQ=255)

                                            cTGATGTTTTTCTTTCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGGGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGCGTGGt                                             >  2:1015243/1‑93 (MQ=255)

                                            cTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAGATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGt                                             >  2:5141283/1‑93 (MQ=255)

                                             tGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGtt                                            >  1:1504624/1‑93 (MQ=255)

                                             tGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGtt                                            >  1:3338096/1‑93 (MQ=255)

                                              gATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGttt                                           >  1:5991931/1‑93 (MQ=255)

                                               aTGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTc                                          >  2:3751969/1‑93 (MQ=255)

                                               aTGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTc                                          <  1:1181486/93‑1 (MQ=255)

                                                tGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCa                                         >  2:6057854/1‑93 (MQ=255)

                                                tGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCa                                         >  2:1772986/1‑93 (MQ=255)

                                                  tttttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAAc                                       >  1:1447491/1‑93 (MQ=255)

                                                   ttttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGGTTCAACa                                      >  2:561576/1‑93 (MQ=255)

                                                    tttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACAt                                     >  2:297002/1‑93 (MQ=255)

                                                     ttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATc                                    <  2:4881752/93‑1 (MQ=255)

                                                     ttCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATc                                    <  1:4810661/93‑1 (MQ=255)

                                                      tCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGATGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCt                                   >  1:4553431/1‑93 (MQ=255)

                                                       cTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACCTCtt                                  >  2:3067816/1‑93 (MQ=255)

                                                        ttGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCttt                                 <  1:4749512/93‑1 (MQ=255)

                                                        ttGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCttt                                 <  1:1527379/93‑1 (MQ=255)

                                                            gTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCa                             <  2:4763807/93‑1 (MQ=255)

                                                            gTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCa                             >  1:6176642/1‑93 (MQ=255)

                                                            gTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCa                             >  2:1966252/1‑93 (MQ=255)

                                                             tGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCAc                            >  1:5243627/1‑93 (MQ=255)

                                                             tGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCAc                            <  1:553005/93‑1 (MQ=255)

                                                              gAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATGTTTACCACg                           >  2:5051584/1‑93 (MQ=255)

                                                                aaCGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTc                         <  1:3259092/93‑1 (MQ=255)

                                                                aaCGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTc                         >  2:2663225/1‑93 (MQ=255)

                                                                   gggAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCt                      <  2:711289/93‑1 (MQ=255)

                                                                    ggAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAGCGCCGAGTGGTTTCCACATCTTTACCACGTCGCTc                     >  2:4059916/1‑93 (MQ=255)

                                                                    ggAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTc                     <  1:4218618/93‑1 (MQ=255)

                                                                    ggAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTc                     >  2:8674/1‑93 (MQ=255)

                                                                     gAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTcc                    >  1:2487889/1‑93 (MQ=255)

                                                                     gAGCCTTCAACGAAATGGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGTTTTCAACATCTTTACCACGTCGCTcc                    <  2:1240305/93‑1 (MQ=255)

                                                                      aGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCg                   <  2:2361083/93‑1 (MQ=255)

                                                                      aGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCg                   <  1:3417759/93‑1 (MQ=255)

                                                                        ccTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGa                 <  1:5573618/93‑1 (MQ=255)

                                                                        ccTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGa                 >  2:244809/1‑93 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                <  2:5312210/93‑1 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                >  2:5232138/1‑93 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                >  1:760322/1‑93 (MQ=255)

                                                                         cTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAt                <  1:1708109/93‑1 (MQ=255)

                                                                          ttCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATg               >  2:2134488/1‑93 (MQ=255)

                                                                          ttCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATg               >  2:3808942/1‑93 (MQ=255)

                                                                           tCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAACACGTCGCTCCGGATGa              >  1:3108214/1‑93 (MQ=255)

                                                                            cAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGAc             >  1:1277693/1‑93 (MQ=255)

                                                                            cAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGAc             <  1:2178531/93‑1 (MQ=255)

                                                                            cAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGAc             <  2:1441461/93‑1 (MQ=255)

                                                                             aaCGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACg            >  2:1053191/1‑93 (MQ=255)

                                                                              aCGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGt           <  1:2725210/93‑1 (MQ=255)

                                                                              aCGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGt           <  2:5786928/93‑1 (MQ=255)

                                                                              aCGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGt           >  2:659909/1‑93 (MQ=255)

                                                                                gAAATTGACAGTGGTGGTGGGATGTAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaa         >  1:5829433/1‑93 (MQ=255)

                                                                                gAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaa         >  1:6251857/1‑93 (MQ=255)

                                                                                gAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaa         >  2:6099255/1‑93 (MQ=255)

                                                                                 aaaTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaat        <  2:5898892/93‑1 (MQ=255)

                                                                                  aaTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaata       >  1:5118313/1‑93 (MQ=255)

                                                                                   aTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaataa      >  2:3166643/1‑93 (MQ=255)

                                                                                   aTTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGtaataa      <  1:1138644/93‑1 (MQ=255)

                                                                                     tGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTaataaat    <  2:1152743/93‑1 (MQ=255)

                                                                                      gACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTaataaata   <  1:828403/93‑1 (MQ=255)

                                                                                      gACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTaataaata   <  1:4456764/93‑1 (MQ=255)

                                                                                       aCAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAataaataa  <  1:4957367/93‑1 (MQ=255)

                                                                                       aCAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAataaataa  <  2:3469592/93‑1 (MQ=255)

GCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA  >  NC_000913/4043539‑4043718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCGC  >  NC_000913/4043536‑4043722

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAG                                                                                               <  SRR4302533.4506776/94‑1 (MQ=60)

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAG                                                                                               >  SRR4302533.3182007/1‑94 (MQ=60)

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAG                                                                                               <  SRR4302533.4117113/94‑1 (MQ=60)

 CTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGT                                                                                              >  SRR4302533.5579971/1‑94 (MQ=60)

 CTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGT                                                                                              >  SRR4302533.4689062/1‑94 (MQ=60)

 CTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGT                                                                                              <  SRR4302533.3725393/94‑1 (MQ=60)

  TGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTG                                                                                             <  SRR4302533.1694427/94‑1 (MQ=60)

  TGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTG                                                                                             >  SRR4302533.1904666/1‑94 (MQ=60)

    CCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGT                                                                                           <  SRR4302533.1643999/94‑1 (MQ=60)

    CCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGT                                                                                           <  SRR4302533.371388/94‑1 (MQ=60)

     CGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTG                                                                                          >  SRR4302533.5398857/1‑94 (MQ=60)

      GCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGG                                                                                         >  SRR4302533.521042/1‑94 (MQ=60)

      GCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGG                                                                                         >  SRR4302533.2128748/1‑94 (MQ=60)

      GCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGG                                                                                         >  SRR4302533.4824493/1‑94 (MQ=60)

       CCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGT                                                                                        <  SRR4302533.1165887/94‑1 (MQ=60)

       CCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGT                                                                                        <  SRR4302533.5181894/94‑1 (MQ=60)

       CCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGT                                                                                        <  SRR4302533.4387656/94‑1 (MQ=60)

        CTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       >  SRR4302533.2367143/1‑94 (MQ=60)

        CTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       >  SRR4302533.4375083/1‑94 (MQ=60)

        CTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       <  SRR4302533.5479249/94‑1 (MQ=60)

        CTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTG                                                                                       >  SRR4302533.661556/1‑94 (MQ=60)

          TTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGG                                                                                     <  SRR4302533.4625826/94‑1 (MQ=60)

          TTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGG                                                                                     >  SRR4302533.2224934/1‑94 (MQ=60)

            GGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAT                                                                                   <  SRR4302533.4600189/94‑1 (MQ=60)

            GGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAT                                                                                   <  SRR4302533.1200295/94‑1 (MQ=60)

            GGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGAT                                                                                   >  SRR4302533.3478308/1‑94 (MQ=60)

             GTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATG                                                                                  <  SRR4302533.5830987/94‑1 (MQ=60)

             GTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATG                                                                                  <  SRR4302533.2358028/94‑1 (MQ=60)

              TGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGC                                                                                 >  SRR4302533.2544447/1‑94 (MQ=60)

               GGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGTA                                                                                >  SRR4302533.3376191/1‑94 (MQ=60)

               GGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCA                                                                                >  SRR4302533.210746/1‑94 (MQ=60)

               GGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCA                                                                                <  SRR4302533.5173166/94‑1 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCCG                                                                               <  SRR4302533.5977747/94‑1 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAG                                                                               <  SRR4302533.2742093/94‑1 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAG                                                                               >  SRR4302533.278998/1‑94 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAG                                                                               >  SRR4302533.930875/1‑94 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAG                                                                               <  SRR4302533.5751122/94‑1 (MQ=60)

                GCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAG                                                                               >  SRR4302533.5936780/1‑94 (MQ=60)

                 CAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGG                                                                              <  SRR4302533.1406284/94‑1 (MQ=60)

                 CAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGG                                                                              >  SRR4302533.5883211/1‑94 (MQ=60)

                 CAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGG                                                                              <  SRR4302533.5238216/94‑1 (MQ=60)

                 CAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGG                                                                              <  SRR4302533.2401126/94‑1 (MQ=60)

                  AACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGC                                                                             <  SRR4302533.5563944/94‑1 (MQ=60)

                   ACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCG                                                                            <  SRR4302533.2735778/94‑1 (MQ=60)

                   ACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCG                                                                            <  SRR4302533.4748152/94‑1 (MQ=60)

                   ACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCG                                                                            <  SRR4302533.2271375/94‑1 (MQ=60)

                      AGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAA                                                                         >  SRR4302533.646750/1‑94 (MQ=60)

                       GTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAAC                                                                        >  SRR4302533.2202228/1‑94 (MQ=60)

                        TTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACT                                                                       >  SRR4302533.352861/1‑94 (MQ=60)

                          TTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTT                                                                     >  SRR4302533.2132578/1‑94 (MQ=60)

                           TGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTT                                                                    <  SRR4302533.1806971/94‑1 (MQ=60)

                           TGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTGGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTT                                                                    <  SRR4302533.3557639/94‑1 (MQ=60)

                            GAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTC                                                                   <  SRR4302533.3349703/94‑1 (MQ=60)

                             AAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCA                                                                  <  SRR4302533.3895760/94‑1 (MQ=60)

                             AAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCA                                                                  >  SRR4302533.1594660/1‑94 (MQ=60)

                              AAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCAC                                                                 <  SRR4302533.2035695/94‑1 (MQ=60)

                              AAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCAC                                                                 <  SRR4302533.2134754/94‑1 (MQ=60)

                               AAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAACTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACA                                                                <  SRR4302533.2758609/94‑1 (MQ=60)

                                AGTGGAGTGGGTTTGCTTATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAA                                                               <  SRR4302533.4957905/94‑1 (MQ=60)

                                AGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAA                                                               >  SRR4302533.5446004/1‑94 (MQ=60)

                                 GTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAG                                                              >  SRR4302533.894483/1‑94 (MQ=60)

                                 GTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAG                                                              <  SRR4302533.3693296/94‑1 (MQ=60)

                                 GTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAG                                                              <  SRR4302533.3851726/94‑1 (MQ=60)

                                 GTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAG                                                              <  SRR4302533.4750875/94‑1 (MQ=60)

                                  TGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGA                                                             >  SRR4302533.1067774/1‑94 (MQ=60)

                                   GGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAA                                                            >  SRR4302533.3165237/1‑94 (MQ=60)

                                   GGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAA                                                            <  SRR4302533.4526470/94‑1 (MQ=60)

                                   GGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAA                                                            <  SRR4302533.6051004/94‑1 (MQ=60)

                                    GAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAAC                                                           <  SRR4302533.4377006/94‑1 (MQ=60)

                                    GAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAAC                                                           <  SRR4302533.1161984/94‑1 (MQ=60)

                                    GAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAAC                                                           <  SRR4302533.6153325/94‑1 (MQ=60)

                                      GTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGC                                                         >  SRR4302533.3986543/1‑94 (MQ=60)

                                          GTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAG                                                     <  SRR4302533.2972937/94‑1 (MQ=60)

                                          GTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAG                                                     >  SRR4302533.62196/1‑94 (MQ=60)

                                           TTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGT                                                    <  SRR4302533.2478082/94‑1 (MQ=60)

                                           TTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGT                                                    <  SRR4302533.4484072/94‑1 (MQ=60)

                                            TTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTG                                                   >  SRR4302533.5078823/1‑94 (MQ=60)

                                            TTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTG                                                   <  SRR4302533.2382092/94‑1 (MQ=60)

                                            TTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTG                                                   <  SRR4302533.5385766/94‑1 (MQ=60)

                                             TGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGG                                                  >  SRR4302533.3542249/1‑94 (MQ=60)

                                             TGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGG                                                  <  SRR4302533.5760753/94‑1 (MQ=60)

                                               CTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTT                                                >  SRR4302533.3358729/1‑94 (MQ=60)

                                               CTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTT                                                >  SRR4302533.1513698/1‑94 (MQ=60)

                                                TGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTT                                               >  SRR4302533.6028226/1‑94 (MQ=60)

                                                 GATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTC                                              <  SRR4302533.145881/94‑1 (MQ=60)

                                                 GATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGCGGGATGCAGGCGAAACTTTTCACAAGAACGACGAGCGGGTTC                                              >  SRR4302533.3265650/1‑94 (MQ=60)

                                                  ATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCA                                             <  SRR4302533.1188583/94‑1 (MQ=60)

                                                    GTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAAC                                           >  SRR4302533.1456224/1‑94 (MQ=60)

                                                        TTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCT                                       <  SRR4302533.4839818/94‑1 (MQ=60)

                                                        TTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCT                                       <  SRR4302533.362952/94‑1 (MQ=60)

                                                        TTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGATGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCT                                       >  SRR4302533.4581046/1‑94 (MQ=60)

                                                           TTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTA                                    <  SRR4302533.4768566/94‑1 (MQ=60)

                                                           TTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTA                                    <  SRR4302533.4778310/94‑1 (MQ=60)

                                                           TTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTA                                    <  SRR4302533.1536572/94‑1 (MQ=60)

                                                           TTGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTA                                    <  SRR4302533.802865/94‑1 (MQ=60)

                                                            TGCGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAC                                   >  SRR4302533.3490176/1‑94 (MQ=60)

                                                              CGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCA                                 <  SRR4302533.1499392/94‑1 (MQ=60)

                                                              CGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCA                                 <  SRR4302533.6333925/94‑1 (MQ=60)

                                                              CGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCA                                 >  SRR4302533.6213751/1‑94 (MQ=60)

                                                              CGTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCA                                 <  SRR4302533.602222/94‑1 (MQ=60)

                                                               GTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCAC                                <  SRR4302533.3059025/94‑1 (MQ=60)

                                                               GTGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCAC                                >  SRR4302533.5275145/1‑94 (MQ=60)

                                                                TGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACG                               <  SRR4302533.6298095/94‑1 (MQ=60)

                                                                TGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACG                               <  SRR4302533.556281/94‑1 (MQ=60)

                                                                TGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACG                               >  SRR4302533.3771449/1‑94 (MQ=60)

                                                                TGAAACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACG                               >  SRR4302533.4209845/1‑94 (MQ=60)

                                                                   AACGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCG                            <  SRR4302533.3279194/94‑1 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCT                          >  SRR4302533.5324987/1‑94 (MQ=60)

                                                                     CGGGAGCCTTCAACGAAATTGACAGTGGTGGAGGGAGGCAGGCGAAACTTTTAACAAGAAAGCCGAGGGGGTTCAACATCTTTACCACGTCGCT                          >  SRR4302533.1732322/1‑94 (MQ=60)

                                                                      GGGAGCCTTCAACGATATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTC                         >  SRR4302533.2041458/1‑94 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        <  SRR4302533.399781/94‑1 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        <  SRR4302533.4244133/94‑1 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        <  SRR4302533.2967593/94‑1 (MQ=60)

                                                                       GGAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCC                        >  SRR4302533.2503212/1‑94 (MQ=60)

                                                                        GAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCG                       <  SRR4302533.237396/94‑1 (MQ=60)

                                                                        GAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCG                       <  SRR4302533.3719458/94‑1 (MQ=60)

                                                                        GAGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCG                       <  SRR4302533.3383913/94‑1 (MQ=60)

                                                                         AGCCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGG                      <  SRR4302533.3438878/94‑1 (MQ=60)

                                                                           CCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAT                    >  SRR4302533.5664848/1‑94 (MQ=60)

                                                                           CCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAT                    <  SRR4302533.5607302/94‑1 (MQ=60)

                                                                           CCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAT                    >  SRR4302533.5671597/1‑94 (MQ=60)

                                                                           CCTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGAT                    >  SRR4302533.764795/1‑94 (MQ=60)

                                                                            CTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATG                   <  SRR4302533.1384879/94‑1 (MQ=60)

                                                                            CTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATG                   <  SRR4302533.1084211/94‑1 (MQ=60)

                                                                            CTTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATG                   <  SRR4302533.1718459/94‑1 (MQ=60)

                                                                             TTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGA                  >  SRR4302533.4346133/1‑94 (MQ=60)

                                                                             TTCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTAACACGTCGCTCCGGATGA                  >  SRR4302533.3127318/1‑94 (MQ=60)

                                                                              TCAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGAC                 >  SRR4302533.1285372/1‑94 (MQ=60)

                                                                               CAACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACG                <  SRR4302533.2191959/94‑1 (MQ=60)

                                                                                AACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGT               <  SRR4302533.5034591/94‑1 (MQ=60)

                                                                                 ACGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTA              <  SRR4302533.2741930/94‑1 (MQ=60)

                                                                                  CGAAATTGACAGTGGTGGTGGGATGTAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAA             >  SRR4302533.5864660/1‑94 (MQ=60)

                                                                                  CGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAA             >  SRR4302533.2027221/1‑94 (MQ=60)

                                                                                  CGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAA             >  SRR4302533.651902/1‑94 (MQ=60)

                                                                                  CGAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAA             >  SRR4302533.6289254/1‑94 (MQ=60)

                                                                                   GAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAAT            <  SRR4302533.4812554/94‑1 (MQ=60)

                                                                                   GAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAAT            >  SRR4302533.4773284/1‑94 (MQ=60)

                                                                                   GAAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAAT            >  SRR4302533.458758/1‑94 (MQ=60)

                                                                                    AAATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATA           >  SRR4302533.5149239/1‑94 (MQ=60)

                                                                                      ATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAA         <  SRR4302533.1145420/94‑1 (MQ=60)

                                                                                      ATTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAA         >  SRR4302533.3054528/1‑94 (MQ=60)

                                                                                       TTGACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAAT        >  SRR4302533.1528403/1‑94 (MQ=60)

                                                                                         GACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA      <  SRR4302533.4483713/94‑1 (MQ=60)

                                                                                         GACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAA      <  SRR4302533.833260/94‑1 (MQ=60)

                                                                                          ACAGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAG     <  SRR4302533.4987400/94‑1 (MQ=60)

                                                                                            AGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCG   <  SRR4302533.4843163/94‑1 (MQ=60)

                                                                                            AGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCG   <  SRR4302533.3654948/94‑1 (MQ=60)

                                                                                            AGTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCG   <  SRR4302533.3552346/94‑1 (MQ=60)

                                                                                             GTGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCGC  <  SRR4302533.3958511/94‑1 (MQ=60)

CCTGCCGCCTTTGGTGGCAACAAGTTTTGAAAAGTGGAGTGGGTTTGCTGATGTTTTTCTTGCGTGAAACGGGAGCCTTCAACGAAATTGACAATGGTGGTGGGATGCAGGCGAAACTTTTCACAAGAACGCCGAGTGGTTTCAACATCTTTACCACGTCGCTCCGGATGACGTAATAAATAAGCGC  >  NC_000913/4043536‑4043722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`