Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,246,188 A→G E213E (GAA→GAG)  lamB → phage lambda receptor protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,246,1880AG100.0% 888.0 / NA 273E213E (GAA→GAG) lamBphage lambda receptor protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (133/140);  total (133/140)

Only 100 of 280 total aligned reads displayed.

CAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGA  >  NC_000913/4246098‑4246277
                                                                                          |                                                                                         
caaTATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCt                                                                                         >  1:5462410/1‑93 (MQ=255)
 aaTATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTg                                                                                        <  1:3013673/93‑1 (MQ=255)
 aaTATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCAGGGCGGCACATTAGAGCTg                                                                                        >  2:2081811/1‑93 (MQ=255)
   tatTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTggg                                                                                      <  2:5379974/93‑1 (MQ=255)
   tatTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTggg                                                                                      >  1:5616731/1‑93 (MQ=255)
   tatTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTggg                                                                                      <  1:3308869/93‑1 (MQ=255)
   tatTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTggg                                                                                      >  2:4002136/1‑93 (MQ=255)
    atTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGgt                                                                                     <  1:4548222/93‑1 (MQ=255)
      ttATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGgtgt                                                                                   <  2:543086/93‑1 (MQ=255)
       tATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTc                                                                                  >  2:1950654/1‑93 (MQ=255)
        aTGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCg                                                                                 <  2:3011569/93‑1 (MQ=255)
          gACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGAc                                                                               >  2:4947482/1‑93 (MQ=255)
           aCTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACt                                                                              >  1:1118454/1‑93 (MQ=255)
             tataCCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTAc                                                                            >  2:2150601/1‑93 (MQ=255)
              ataCCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACg                                                                           >  2:4024427/1‑93 (MQ=255)
               taCCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACgg                                                                          >  2:631519/1‑93 (MQ=255)
                aCCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGt                                                                         <  1:2574675/93‑1 (MQ=255)
                aCCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGt                                                                         <  2:5267457/93‑1 (MQ=255)
                aCCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGt                                                                         <  1:5298037/93‑1 (MQ=255)
                 ccAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTc                                                                        <  2:1623189/93‑1 (MQ=255)
                 ccAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTc                                                                        >  1:973835/1‑93 (MQ=255)
                 ccAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTc                                                                        >  1:4377083/1‑93 (MQ=255)
                 acAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTc                                                                        <  1:607753/92‑1 (MQ=255)
                   aaCGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGt                                                                      >  2:4883605/1‑93 (MQ=255)
                   aaCGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGt                                                                      >  1:648674/1‑93 (MQ=255)
                   aaCGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGt                                                                      >  2:1362368/1‑93 (MQ=255)
                    aCGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTg                                                                     >  1:4889588/1‑93 (MQ=255)
                      gAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGcc                                                                   >  1:3146960/1‑93 (MQ=255)
                       aaaCCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCa                                                                  >  1:600541/1‑93 (MQ=255)
                        aaCCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCac                                                                 >  1:4166432/1‑92 (MQ=255)
                        aaCCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCaa                                                                 >  1:765466/1‑93 (MQ=255)
                         aCCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAAc                                                                >  2:723194/1‑93 (MQ=255)
                         aCCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGGGTCGAATACGGTCGTGcacac                                                                >  2:1552752/1‑89 (MQ=255)
                          ccGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACt                                                               <  2:4904753/93‑1 (MQ=255)
                            gcgAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTg                                                             >  1:3784673/1‑93 (MQ=255)
                            gcgAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTg                                                             >  2:3125999/1‑93 (MQ=255)
                             cgAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGc                                                            <  1:4769162/93‑1 (MQ=255)
                               aaCGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGt                                                          >  2:4524186/1‑93 (MQ=255)
                               aaCGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGt                                                          <  2:4438889/93‑1 (MQ=255)
                               aaCGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGt                                                          <  2:5479231/93‑1 (MQ=255)
                               aaCGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGt                                                          >  2:6253720/1‑93 (MQ=255)
                               aaCGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGt                                                          >  1:4005136/1‑93 (MQ=255)
                               aaCGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGt                                                          <  1:5054229/93‑1 (MQ=255)
                                acgacgTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTg                                                         >  1:1637354/1‑93 (MQ=255)
                                  gacgTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGAt                                                       <  1:2164206/93‑1 (MQ=255)
                                  gacgTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGAt                                                       <  1:6208824/93‑1 (MQ=255)
                                  gacgTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGAt                                                       >  2:410312/1‑93 (MQ=255)
                                    cgTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATaa                                                     >  2:2352285/1‑93 (MQ=255)
                                     gTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAAc                                                    >  1:27069/1‑93 (MQ=255)
                                      ttttCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACt                                                   >  1:3574170/1‑93 (MQ=255)
                                      ttttCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACt                                                   >  2:3723882/1‑93 (MQ=255)
                                        ttCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTAt                                                 <  2:3498155/93‑1 (MQ=255)
                                        ttCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTAt                                                 <  2:838204/93‑1 (MQ=255)
                                         tCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATc                                                <  2:2866213/93‑1 (MQ=255)
                                         tCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATc                                                >  2:5383605/1‑93 (MQ=255)
                                         tCGATGGGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATc                                                <  2:4716798/93‑1 (MQ=255)
                                           gATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGt                                              >  2:5189780/1‑93 (MQ=255)
                                            gtgtgCGTTTAGCGCAGATGGAAATCAGCCCGGGCGGCAGATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTc                                             <  1:854577/92‑1 (MQ=255)
                                            aTGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTc                                             <  1:6132113/93‑1 (MQ=255)
                                             tgtgCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGGCACCTTGCGTGATAACTATCGTCt                                            >  2:2601569/1‑93 (MQ=255)
                                             tgtgCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCt                                            <  1:1367805/93‑1 (MQ=255)
                                             tgtgCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCt                                            >  1:1870393/1‑93 (MQ=255)
                                             tgtgCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCt                                            >  2:224794/1‑93 (MQ=255)
                                               tgCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTgg                                          <  1:141406/93‑1 (MQ=255)
                                                gCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGt                                         >  2:950024/1‑93 (MQ=255)
                                                  gTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGAGTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTg                                       >  2:2513811/1‑93 (MQ=255)
                                                  gTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTg                                       >  1:2271396/1‑93 (MQ=255)
                                                    ttAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGAt                                     <  2:5776594/93‑1 (MQ=255)
                                                    ttAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGAt                                     >  2:6093448/1‑93 (MQ=255)
                                                      aGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGATTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATgg                                   >  2:3213873/1‑93 (MQ=255)
                                                       gcgcAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGgc                                  <  2:4554427/93‑1 (MQ=255)
                                                        cgcAGATGGAAATCAACCCGGGCGGCAAATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGgcg                                 <  2:5154300/93‑1 (MQ=255)
                                                         gcAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGgcgc                                >  1:5120851/1‑93 (MQ=255)
                                                           aGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCAt                              >  1:373041/1‑93 (MQ=255)
                                                            gATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATc                             <  1:3903573/93‑1 (MQ=255)
                                                            gATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATc                             >  1:1012650/1‑93 (MQ=255)
                                                            gATCGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTCCGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATc                             <  1:2623083/93‑1 (MQ=255)
                                                               ggAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCgta                          >  2:563395/1‑91 (MQ=255)
                                                               ggAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGaa                          >  2:4143504/1‑93 (MQ=255)
                                                                  aaTCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGa                       <  1:1323632/93‑1 (MQ=255)
                                                                  aaTCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGa                       <  2:1183219/93‑1 (MQ=255)
                                                                   aTCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGAc                      <  1:6237005/93‑1 (MQ=255)
                                                                   aTCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGAc                      <  1:1678345/93‑1 (MQ=255)
                                                                   aTCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGAc                      <  2:6003962/93‑1 (MQ=255)
                                                                    tCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACg                     <  1:3058105/93‑1 (MQ=255)
                                                                      aaCCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGc                   <  1:5486233/93‑1 (MQ=255)
                                                                      aaCCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGc                   >  2:3353763/1‑93 (MQ=255)
                                                                       aCCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCt                  >  1:4139509/1‑93 (MQ=255)
                                                                       aCCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCt                  <  2:4229377/93‑1 (MQ=255)
                                                                        cccGGGCGGTACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTg                 <  2:3852028/93‑1 (MQ=255)
                                                                        cccGGGCGGCACATTAGAGCTGGGTGTCCACTACGGTCGTGCCAACTTGCGTGGTAACTATCGTCTGGGTGATGGCGCATCGCAAAACGGCTg                 >  2:5857936/1‑93 (MQ=255)
                                                                         ccGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTgg                <  1:4866334/93‑1 (MQ=255)
                                                                           gggCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGtt              <  2:5014629/93‑1 (MQ=255)
                                                                             gcggcACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTAt            <  2:1775067/93‑1 (MQ=255)
                                                                                gcACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCa         <  1:2474609/93‑1 (MQ=255)
                                                                                 cacaTTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCAc        <  1:2377605/93‑1 (MQ=255)
                                                                                 cacaTTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCAc        <  1:3685791/93‑1 (MQ=255)
                                                                                  acaTTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCAct       <  2:2636539/93‑1 (MQ=255)
                                                                                  acaTTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCAct       <  2:1110916/93‑1 (MQ=255)
                                                                                   caTTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCActg      <  1:5811021/93‑1 (MQ=255)
                                                                                          |                                                                                         
CAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGA  >  NC_000913/4246098‑4246277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAACAT  >  NC_000913/4246095‑4246281
                                                                                             |                                                                                             
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAG                                                                                               <  SRR4302533.4761903/94‑1 (MQ=60)
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAG                                                                                               >  SRR4302533.1149497/1‑94 (MQ=60)
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAG                                                                                               >  SRR4302533.590464/1‑94 (MQ=60)
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAG                                                                                               >  SRR4302533.2912578/1‑94 (MQ=60)
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAG                                                                                               <  SRR4302533.2899515/94‑1 (MQ=60)
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAG                                                                                               >  SRR4302533.544335/1‑94 (MQ=60)
 AACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGC                                                                                              >  SRR4302533.1234678/1‑94 (MQ=60)
  ACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCT                                                                                             >  SRR4302533.234703/1‑94 (MQ=60)
  ACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCT                                                                                             >  SRR4302533.5495320/1‑94 (MQ=60)
  ACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGAGTTTAGCGCAGATGGAAAGCAACCCGGGCGGCACATTAGAGCT                                                                                             <  SRR4302533.4436974/94‑1 (MQ=60)
   CAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTG                                                                                            <  SRR4302533.1777169/94‑1 (MQ=60)
    AATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGG                                                                                           >  SRR4302533.4125065/1‑94 (MQ=60)
    AATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGG                                                                                           >  SRR4302533.3990926/1‑94 (MQ=60)
    AATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGG                                                                                           <  SRR4302533.3032107/94‑1 (MQ=60)
     ATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGG                                                                                          >  SRR4302533.5650685/1‑94 (MQ=60)
      TATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGT                                                                                         <  SRR4302533.335344/94‑1 (MQ=60)
      TATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGT                                                                                         <  SRR4302533.3329301/94‑1 (MQ=60)
       ATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTG                                                                                        <  SRR4302533.4575768/94‑1 (MQ=60)
        TTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGT                                                                                       >  SRR4302533.4144828/1‑94 (MQ=60)
        TTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGT                                                                                       <  SRR4302533.3833889/94‑1 (MQ=60)
        TTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGT                                                                                       <  SRR4302533.2625922/94‑1 (MQ=60)
          TATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCG                                                                                     <  SRR4302533.2786962/94‑1 (MQ=60)
          TATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCG                                                                                     <  SRR4302533.6340597/94‑1 (MQ=60)
           ATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAACCAACCCGGGCGGCACATTAGAGCTGGGTGTCGA                                                                                    >  SRR4302533.3045679/1‑94 (MQ=60)
            TGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGCTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGAC                                                                                   >  SRR4302533.6044013/1‑94 (MQ=60)
             GACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACT                                                                                  >  SRR4302533.1125090/1‑94 (MQ=60)
               CTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTAC                                                                                >  SRR4302533.2601/1‑94 (MQ=60)
               CTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGCAGGCACATTAGAGCTGGGTGGCGACTAC                                                                                >  SRR4302533.658839/1‑94 (MQ=60)
                 ATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGG                                                                              >  SRR4302533.2502860/1‑94 (MQ=60)
                   ACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTC                                                                            >  SRR4302533.979552/1‑94 (MQ=60)
                   ACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTC                                                                            >  SRR4302533.3803554/1‑94 (MQ=60)
                   ACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTC                                                                            >  SRR4302533.4403508/1‑94 (MQ=60)
                   ACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTC                                                                            <  SRR4302533.5329774/94‑1 (MQ=60)
                   ACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTC                                                                            <  SRR4302533.2590514/94‑1 (MQ=60)
                    CCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGACATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGGCG                                                                           >  SRR4302533.5502853/1‑94 (MQ=60)
                    CCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCG                                                                           >  SRR4302533.1331927/1‑94 (MQ=60)
                    CCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCG                                                                           >  SRR4302533.5493266/1‑94 (MQ=60)
                    CCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCG                                                                           >  SRR4302533.330306/1‑94 (MQ=60)
                    ACAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCG                                                                           <  SRR4302533.611330/94‑1 (MQ=60)
                     CAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGT                                                                          >  SRR4302533.652498/1‑94 (MQ=60)
                     CAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGT                                                                          <  SRR4302533.3296823/94‑1 (MQ=60)
                     CAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGT                                                                          >  SRR4302533.1729193/1‑94 (MQ=60)
                     CAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGT                                                                          >  SRR4302533.2276453/1‑94 (MQ=60)
                      AACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTG                                                                         >  SRR4302533.359987/1‑94 (MQ=60)
                      AACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTG                                                                         >  SRR4302533.4919217/1‑94 (MQ=60)
                      AACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACCACGGTCGTG                                                                         <  SRR4302533.2468731/94‑1 (MQ=60)
                       ACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGC                                                                        >  SRR4302533.976111/1‑94 (MQ=60)
                        CGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCC                                                                       >  SRR4302533.3166310/1‑94 (MQ=60)
                         GAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCA                                                                      >  SRR4302533.340747/1‑94 (MQ=60)
                         GAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCA                                                                      >  SRR4302533.604071/1‑94 (MQ=60)
                         GAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCA                                                                      >  SRR4302533.4801183/1‑94 (MQ=60)
                          AAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAC                                                                     >  SRR4302533.4191677/1‑94 (MQ=60)
                          AAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAA                                                                     >  SRR4302533.769977/1‑94 (MQ=60)
                           AACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAAC                                                                    >  SRR4302533.5773072/1‑94 (MQ=60)
                             CCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTT                                                                  <  SRR4302533.5100051/94‑1 (MQ=60)
                              CGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTG                                                                 >  SRR4302533.3807847/1‑94 (MQ=60)
                              CGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTG                                                                 >  SRR4302533.5743134/1‑94 (MQ=60)
                              CGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTG                                                                 <  SRR4302533.1675365/94‑1 (MQ=60)
                                CGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCCACTTGCG                                                               >  SRR4302533.4184477/1‑94 (MQ=60)
                                CGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCG                                                               <  SRR4302533.4798068/94‑1 (MQ=60)
                                CGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCG                                                               >  SRR4302533.3635307/1‑94 (MQ=60)
                                 GAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGT                                                              >  SRR4302533.4029517/1‑94 (MQ=60)
                                  AACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCCACTTGCGTG                                                             >  SRR4302533.5548936/1‑94 (MQ=60)
                                  AACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTG                                                             >  SRR4302533.1647268/1‑94 (MQ=60)
                                  AACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTG                                                             <  SRR4302533.5084785/94‑1 (MQ=60)
                                     GACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATA                                                          <  SRR4302533.6246064/94‑1 (MQ=60)
                                     GACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATA                                                          <  SRR4302533.2177521/94‑1 (MQ=60)
                                     GACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATA                                                          <  SRR4302533.1158449/94‑1 (MQ=60)
                                      ACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAA                                                         >  SRR4302533.3710520/1‑94 (MQ=60)
                                       CGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAAC                                                        >  SRR4302533.27249/1‑94 (MQ=60)
                                        GTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACT                                                       <  SRR4302533.4281761/94‑1 (MQ=60)
                                        GTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACT                                                       >  SRR4302533.6162246/1‑94 (MQ=60)
                                        GTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACT                                                       <  SRR4302533.4421943/94‑1 (MQ=60)
                                        GTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACT                                                       >  SRR4302533.3596200/1‑94 (MQ=60)
                                        GTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACT                                                       <  SRR4302533.380697/94‑1 (MQ=60)
                                        GTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACT                                                       >  SRR4302533.4873252/1‑94 (MQ=60)
                                          TTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAcgtat                                                     >  SRR4302533.4816039/1‑89 (MQ=60)
                                          TTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTAT                                                     <  SRR4302533.2711214/94‑1 (MQ=60)
                                           TTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATC                                                    <  SRR4302533.4630131/94‑1 (MQ=60)
                                           TTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATC                                                    <  SRR4302533.4736857/94‑1 (MQ=60)
                                            TCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCG                                                   <  SRR4302533.1388563/94‑1 (MQ=60)
                                             CGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACAGTCGTGCCAACTTGCGTGATAACTATCGT                                                  >  SRR4302533.5093466/1‑94 (MQ=60)
                                               GTGTGCGTTTAGCGCAGATGGAAATCAGCCCGGGCGGCAGATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCT                                                <  SRR4302533.859584/94‑1 (MQ=60)
                                               ATGTGCGTTTAGCGCAGATGGAAATCATCCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCT                                                <  SRR4302533.767707/94‑1 (MQ=60)
                                               ATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCT                                                <  SRR4302533.5274932/94‑1 (MQ=60)
                                               ATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCT                                                >  SRR4302533.1881797/1‑94 (MQ=60)
                                               ATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCT                                                <  SRR4302533.6169060/94‑1 (MQ=60)
                                                TGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTG                                               <  SRR4302533.1376030/94‑1 (MQ=60)
                                                TGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTG                                               >  SRR4302533.6254139/1‑94 (MQ=60)
                                                  TGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGT                                             <  SRR4302533.2561120/94‑1 (MQ=60)
                                                  TGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGT                                             <  SRR4302533.142310/94‑1 (MQ=60)
                                                  TGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGT                                             >  SRR4302533.6258279/1‑94 (MQ=60)
                                                   GCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTT                                            <  SRR4302533.5939070/94‑1 (MQ=60)
                                                   GCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTT                                            <  SRR4302533.3991801/94‑1 (MQ=60)
                                                   GCGTTGAGCGCAGATGGAAATCAGCCAGGGCGGCACATTAGAGCTGGGTGTCGACGACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTT                                            <  SRR4302533.3137037/94‑1 (MQ=60)
                                                   GCGTTGAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTT                                            <  SRR4302533.1963498/94‑1 (MQ=60)
                                                    CGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTG                                           >  SRR4302533.2285453/1‑94 (MQ=60)
                                                        TAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGG                                       <  SRR4302533.5032678/94‑1 (MQ=60)
                                                           CGCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGC                                    >  SRR4302533.5151790/1‑94 (MQ=60)
                                                            GCAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCA                                   >  SRR4302533.1475622/1‑94 (MQ=60)
                                                             CAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCAT                                  >  SRR4302533.375294/1‑94 (MQ=60)
                                                             CAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCAT                                  >  SRR4302533.2807004/1‑94 (MQ=60)
                                                             CAGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCAT                                  >  SRR4302533.2719640/1‑94 (MQ=60)
                                                              AGATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATC                                 >  SRR4302533.1018578/1‑94 (MQ=60)
                                                               GATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCG                                <  SRR4302533.3927414/94‑1 (MQ=60)
                                                               GATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCG                                <  SRR4302533.4355493/94‑1 (MQ=60)
                                                               GATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCG                                >  SRR4302533.3126177/1‑94 (MQ=60)
                                                               GATCGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTCCGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCG                                <  SRR4302533.2639182/94‑1 (MQ=60)
                                                                ATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGA                               >  SRR4302533.4967750/1‑94 (MQ=60)
                                                                ATGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGA                               <  SRR4302533.1923936/94‑1 (MQ=60)
                                                                 TGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAA                              <  SRR4302533.585656/94‑1 (MQ=60)
                                                                 TGGAAATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCCTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAA                              >  SRR4302533.1930284/1‑94 (MQ=60)
                                                                     AATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGAC                          <  SRR4302533.1221173/94‑1 (MQ=60)
                                                                     AATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGAC                          <  SRR4302533.1331570/94‑1 (MQ=60)
                                                                      ATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACG                         <  SRR4302533.6274352/94‑1 (MQ=60)
                                                                      ATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACG                         <  SRR4302533.6097990/94‑1 (MQ=60)
                                                                      ATCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACG                         <  SRR4302533.1688511/94‑1 (MQ=60)
                                                                       TCAACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGG                        <  SRR4302533.3076870/94‑1 (MQ=60)
                                                                       TCAACCCGGGCGGAACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGG                        <  SRR4302533.6296307/94‑1 (MQ=60)
                                                                         AACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCT                      <  SRR4302533.5609178/94‑1 (MQ=60)
                                                                         AACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCT                      <  SRR4302533.5519301/94‑1 (MQ=60)
                                                                         AACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCT                      >  SRR4302533.4164617/1‑94 (MQ=60)
                                                                         AACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCT                      <  SRR4302533.2235604/94‑1 (MQ=60)
                                                                          ACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTG                     >  SRR4302533.1357195/1‑94 (MQ=60)
                                                                          ACCCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTG                     >  SRR4302533.6176356/1‑94 (MQ=60)
                                                                            CCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGT                   <  SRR4302533.4895825/94‑1 (MQ=60)
                                                                            CCGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGT                   <  SRR4302533.5269662/94‑1 (MQ=60)
                                                                             CGGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTT                  <  SRR4302533.152141/94‑1 (MQ=60)
                                                                              GGGCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTA                 <  SRR4302533.4490980/94‑1 (MQ=60)
                                                                                GCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATT               >  SRR4302533.2326144/1‑94 (MQ=60)
                                                                                GCGGCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATT               >  SRR4302533.6177579/1‑94 (MQ=60)
                                                                                   GCACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCAC            <  SRR4302533.2489868/94‑1 (MQ=60)
                                                                                    CACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACT           <  SRR4302533.1109868/94‑1 (MQ=60)
                                                                                    CACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACT           <  SRR4302533.2392315/94‑1 (MQ=60)
                                                                                    CACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACT           <  SRR4302533.3708444/94‑1 (MQ=60)
                                                                                    CACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACT           <  SRR4302533.5387549/94‑1 (MQ=60)
                                                                                     ACATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTG          >  SRR4302533.910194/1‑94 (MQ=60)
                                                                                      CATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGC         <  SRR4302533.5846115/94‑1 (MQ=60)
                                                                                      CATTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGC         >  SRR4302533.4917320/1‑94 (MQ=60)
                                                                                        TTAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGACTGGTTATTCACTGCTG       <  SRR4302533.84637/94‑1 (MQ=60)
                                                                                         TAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGA      <  SRR4302533.1419781/94‑1 (MQ=60)
                                                                                         TAGAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGA      <  SRR4302533.3867331/94‑1 (MQ=60)
                                                                                           GAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAAC    <  SRR4302533.327864/94‑1 (MQ=60)
                                                                                           GAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAAC    >  SRR4302533.4028725/1‑94 (MQ=60)
                                                                                           GAGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAAC    <  SRR4302533.1157708/94‑1 (MQ=60)
                                                                                            AGCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAACA   >  SRR4302533.3773050/1‑94 (MQ=60)
                                                                                             GCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAACAT  <  SRR4302533.2636377/94‑1 (MQ=60)
                                                                                             GCTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAACAT  <  SRR4302533.1616166/94‑1 (MQ=60)
                                                                                             |                                                                                             
CAACAATATTTATGACTATACCAACGAAACCGCGAACGACGTTTTCGATGTGCGTTTAGCGCAGATGGAAATCAACCCGGGCGGCACATTAGAACTGGGTGTCGACTACGGTCGTGCCAACTTGCGTGATAACTATCGTCTGGTTGATGGCGCATCGAAAGACGGCTGGTTATTCACTGCTGAACAT  >  NC_000913/4246095‑4246281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑