Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,297,280	T→C	T444A (ACC→GCC)	yjcP ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,297,280	0	T	C	100.0%	750.3 / NA	233	T444A (ACC→GCC)	yjcP	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (131/102); total (131/102)

Only 100 of 246 total aligned reads displayed.

ATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCA  >  NC_000913/4297190‑4297369

aTTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTcggcgg                                                                                         >  2:3869186/1‑93 (MQ=255)

 tttCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCggcggc                                                                                        >  2:4735870/1‑93 (MQ=255)

    catcaACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTg                                                                                     >  1:1232554/1‑93 (MQ=255)

    catcaACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTg                                                                                     <  2:671873/93‑1 (MQ=255)

     atcaACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGt                                                                                    <  1:3528469/93‑1 (MQ=255)

     atcaACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGt                                                                                    >  2:1063904/1‑93 (MQ=255)

       caACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTaa                                                                                  <  1:3516931/93‑1 (MQ=255)

       caACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTaa                                                                                  <  2:3001787/93‑1 (MQ=255)

        aaCTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAg                                                                                 >  2:2902890/1‑93 (MQ=255)

        aaCTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAg                                                                                 >  2:1948917/1‑93 (MQ=255)

           tGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCgg                                                                              >  1:2668549/1‑93 (MQ=255)

           tGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCgg                                                                              >  1:3899287/1‑93 (MQ=255)

            gAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGc                                                                             >  2:1905356/1‑93 (MQ=255)

            gAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGc                                                                             <  2:1844390/93‑1 (MQ=255)

            gAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGc                                                                             <  1:5445128/93‑1 (MQ=255)

            gAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGc                                                                             >  2:5293077/1‑93 (MQ=255)

             aaTGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCt                                                                            >  1:2979414/1‑93 (MQ=255)

              aTGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTg                                                                           >  1:92219/1‑93 (MQ=255)

               tGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGAGGCTgg                                                                          >  2:4364199/1‑93 (MQ=255)

                 cTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGtt                                                                        <  1:1783699/93‑1 (MQ=255)

                   ttGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTaa                                                                      >  2:2317074/1‑93 (MQ=255)

                    tGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAg                                                                     >  1:2035069/1‑93 (MQ=255)

                    tGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAg                                                                     >  2:5092366/1‑93 (MQ=255)

                    tGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAg                                                                     <  1:1575283/93‑1 (MQ=255)

                     ggATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGc                                                                    >  1:4635074/1‑93 (MQ=255)

                     ggATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGc                                                                    <  2:1474197/93‑1 (MQ=255)

                      gATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGcc                                                                   >  1:4768302/1‑93 (MQ=255)

                       aTCACCCGGCGGCTGTCCAGCATCACTAAAGACATGTCTTCGGCAAGCACTGGCCACCGGGCTTCGGCGGCCTGTGAGCGGCTGGTTTTGCcg                                                                  >  2:3064124/1‑93 (MQ=255)

                        tCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCcgc                                                                 <  1:4164599/93‑1 (MQ=255)

                          aCCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCgcgc                                                               >  2:2113158/1‑93 (MQ=255)

                           cccGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCt                                                              <  2:5560781/93‑1 (MQ=255)

                           cccGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCt                                                              <  1:5180962/93‑1 (MQ=255)

                              ggcggcTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGAt                                                           >  2:5478073/1‑93 (MQ=255)

                               gcggcTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATa                                                          <  1:2322655/93‑1 (MQ=255)

                                 ggcTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAgg                                                        >  2:6067486/1‑93 (MQ=255)

                                 ggcTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAgg                                                        <  2:4348253/93‑1 (MQ=255)

                                  gcTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggc                                                       >  2:4480780/1‑93 (MQ=255)

                                  gcTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggc                                                       >  1:1191782/1‑93 (MQ=255)

                                  gcTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGACGCGCTGATAggg                                                       >  2:6170121/1‑92 (MQ=255)

                                   cTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggcg                                                      <  1:5593846/93‑1 (MQ=255)

                                   cTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggcg                                                      <  2:2827880/93‑1 (MQ=255)

                                   cTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggcg                                                      >  2:3536549/1‑93 (MQ=255)

                                    tGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggcgg                                                     >  1:6040858/1‑93 (MQ=255)

                                    tGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAagcgg                                                     >  1:876223/1‑93 (MQ=255)

                                     gTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggcggc                                                    >  2:1779093/1‑93 (MQ=255)

                                     gTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggcggc                                                    >  2:6264640/1‑93 (MQ=255)

                                     gTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAggcggc                                                    >  2:6084295/1‑93 (MQ=255)

                                      tCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGcc                                                   >  1:5952896/1‑93 (MQ=255)

                                      tCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGcc                                                   >  1:3766830/1‑93 (MQ=255)

                                      tCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGcc                                                   >  2:3740882/1‑93 (MQ=255)

                                      tCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGcc                                                   <  1:658233/93‑1 (MQ=255)

                                      tCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGATGGTTAAGCCGCGCTGATAGGCGGcc                                                   >  2:2617608/1‑93 (MQ=255)

                                         aGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCg                                                >  1:142578/1‑93 (MQ=255)

                                         aGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCg                                                >  1:4503704/1‑93 (MQ=255)

                                         aGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCg                                                <  2:5536304/93‑1 (MQ=255)

                                           cATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGc                                              <  2:5609145/93‑1 (MQ=255)

                                           cATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGc                                              <  2:46362/93‑1 (MQ=255)

                                           cATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGc                                              <  1:639782/93‑1 (MQ=255)

                                            aTCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCa                                             >  2:1189096/1‑93 (MQ=255)

                                            aTCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCa                                             <  2:3607943/93‑1 (MQ=255)

                                             tCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAg                                            <  1:5051278/93‑1 (MQ=255)

                                             tCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAg                                            >  2:1414008/1‑93 (MQ=255)

                                              cAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAgc                                           >  1:5253178/1‑93 (MQ=255)

                                              cAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAgc                                           <  2:4011101/93‑1 (MQ=255)

                                                gTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAgcgc                                         >  1:2532684/1‑93 (MQ=255)

                                                gTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAgcgc                                         >  1:5791712/1‑93 (MQ=255)

                                                 tAATGACATCTCTTCGGCAAGCACGGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAgcgcg                                        <  2:4984147/93‑1 (MQ=255)

                                                   aTGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCt                                      >  2:2448630/1‑93 (MQ=255)

                                                     gACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTgg                                    >  1:3110711/1‑93 (MQ=255)

                                                     gACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTgg                                    >  2:2125802/1‑93 (MQ=255)

                                                       cATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGt                                  <  1:21436/93‑1 (MQ=255)

                                                        aTCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTa                                 >  1:4996868/1‑93 (MQ=255)

                                                           tctTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAg                              >  2:5438914/1‑93 (MQ=255)

                                                              tCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAgcgc                           <  2:2493689/93‑1 (MQ=255)

                                                               cGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGcgcg                          <  2:2408895/93‑1 (MQ=255)

                                                                ggCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGggcgg                         >  2:3148741/1‑92 (MQ=255)

                                                                ggCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGcgcgg                         >  2:710534/1‑92 (MQ=255)

                                                                 gCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTg                        >  2:6015055/1‑93 (MQ=255)

                                                                 gCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTg                        <  1:4350057/93‑1 (MQ=255)

                                                                  cAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCCCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTgg                       <  2:516608/93‑1 (MQ=255)

                                                                    aGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCt                     >  1:4083249/1‑93 (MQ=255)

                                                                     gCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCtt                    <  1:1902593/93‑1 (MQ=255)

                                                                       aCTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTcc                  >  1:1698112/1‑93 (MQ=255)

                                                                         tGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCAc                >  1:1005142/1‑93 (MQ=255)

                                                                         tGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCAc                <  1:3148003/93‑1 (MQ=255)

                                                                         tGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCAc                >  2:5824688/1‑93 (MQ=255)

                                                                          ggCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCAcg               <  2:5947235/93‑1 (MQ=255)

                                                                           gCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCAcgc              <  1:3327010/93‑1 (MQ=255)

                                                                             aaCCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGt            >  2:1723763/1‑93 (MQ=255)

                                                                              aCCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGtt           <  2:539260/93‑1 (MQ=255)

                                                                              aCCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGGGGCTTCCACGCGtt           >  2:2381625/1‑93 (MQ=255)

                                                                               ccGGGCTTCGGCGCCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTc          <  2:4321409/93‑1 (MQ=255)

                                                                                cGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCa         <  2:5698555/93‑1 (MQ=255)

                                                                                cGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCa         >  1:1405478/1‑93 (MQ=255)

                                                                                 gggCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCTCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAg        >  1:6079802/1‑93 (MQ=255)

                                                                                 gggCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAg        >  1:4841305/1‑93 (MQ=255)

                                                                                   gCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGcc      >  1:3425377/1‑93 (MQ=255)

                                                                                   gCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGcc      <  1:5634270/93‑1 (MQ=255)

                                                                                   gCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGcc      >  2:2213780/1‑93 (MQ=255)

                                                                                       cggcggCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCa  <  1:2942875/93‑1 (MQ=255)

ATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCA  >  NC_000913/4297190‑4297369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCATTTC  >  NC_000913/4297188‑4297373

CGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCG                                                                                              >  SRR4302533.1033455/1‑94 (MQ=60)

CGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCG                                                                                              <  SRR4302533.117425/94‑1 (MQ=60)

 GATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGG                                                                                             <  SRR4302533.1841711/94‑1 (MQ=60)

 GATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGG                                                                                             >  SRR4302533.3592231/1‑94 (MQ=60)

  ATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGC                                                                                            >  SRR4302533.3240526/1‑94 (MQ=60)

     TCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTG                                                                                         >  SRR4302533.1239930/1‑94 (MQ=60)

      CATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGT                                                                                        >  SRR4302533.3063550/1‑94 (MQ=60)

      CATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGT                                                                                        <  SRR4302533.4099390/94‑1 (MQ=60)

       ATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTA                                                                                       <  SRR4302533.3550217/94‑1 (MQ=60)

         CAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAG                                                                                     >  SRR4302533.3381337/1‑94 (MQ=60)

         CAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAG                                                                                     <  SRR4302533.3538613/94‑1 (MQ=60)

           ACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCG                                                                                   <  SRR4302533.6141162/94‑1 (MQ=60)

            CTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGG                                                                                  >  SRR4302533.2684922/1‑94 (MQ=60)

            CTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGG                                                                                  >  SRR4302533.3923079/1‑94 (MQ=60)

            CTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGG                                                                                  <  SRR4302533.148732/94‑1 (MQ=60)

              GAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCT                                                                                <  SRR4302533.5477936/94‑1 (MQ=60)

              GAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCT                                                                                <  SRR4302533.2929418/94‑1 (MQ=60)

              GAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCT                                                                                >  SRR4302533.2997645/1‑94 (MQ=60)

               AATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTG                                                                               >  SRR4302533.92804/1‑94 (MQ=60)

                ATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGG                                                                              >  SRR4302533.801342/1‑94 (MQ=60)

                ATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGG                                                                              <  SRR4302533.3030323/94‑1 (MQ=60)

                  GCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTT                                                                            <  SRR4302533.4914224/94‑1 (MQ=60)

                  GCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTT                                                                            <  SRR4302533.5417302/94‑1 (MQ=60)

                  GCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTT                                                                            <  SRR4302533.1229693/94‑1 (MQ=60)

                   CTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTA                                                                           <  SRR4302533.1794546/94‑1 (MQ=60)

                     TTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAG                                                                         >  SRR4302533.5551242/1‑94 (MQ=60)

                     TTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAG                                                                         >  SRR4302533.2047621/1‑94 (MQ=60)

                      TGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGC                                                                        >  SRR4302533.4663160/1‑94 (MQ=60)

                      TGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGC                                                                        <  SRR4302533.1584769/94‑1 (MQ=60)

                       GGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCC                                                                       >  SRR4302533.4797205/1‑94 (MQ=60)

                        GATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCG                                                                      <  SRR4302533.3835925/94‑1 (MQ=60)

                        GATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCG                                                                      >  SRR4302533.4681070/1‑94 (MQ=60)

                          TCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCG                                                                    <  SRR4302533.4189832/94‑1 (MQ=60)

                             CTCGGCGTCTGTCCAGCATCAGTAATGCCATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTG                                                                 <  SRR4302533.3480134/94‑1 (MQ=60)

                             CCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTG                                                                 <  SRR4302533.5212249/94‑1 (MQ=60)

                             CCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTG                                                                 >  SRR4302533.2269421/1‑94 (MQ=60)

                             CCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGATTAAGCCGCGCTG                                                                 >  SRR4302533.3624658/1‑94 (MQ=60)

                               CGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGAT                                                               <  SRR4302533.1178333/94‑1 (MQ=60)

                               CGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGAT                                                               <  SRR4302533.5202286/94‑1 (MQ=60)

                               CGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGAT                                                               >  SRR4302533.4128037/1‑94 (MQ=60)

                                GGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATA                                                              >  SRR4302533.6262547/1‑94 (MQ=60)

                                GGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATA                                                              >  SRR4302533.2988762/1‑94 (MQ=60)

                                 GCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAG                                                             <  SRR4302533.5669923/94‑1 (MQ=60)

                                 GCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAG                                                             <  SRR4302533.919555/94‑1 (MQ=60)

                                 GCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAG                                                             <  SRR4302533.2337029/94‑1 (MQ=60)

                                   GGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGC                                                           >  SRR4302533.2173418/1‑94 (MQ=60)

                                   GGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGC                                                           >  SRR4302533.1198941/1‑94 (MQ=60)

                                    GCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCG                                                          >  SRR4302533.315359/1‑94 (MQ=60)

                                     CTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGG                                                         >  SRR4302533.2143423/1‑94 (MQ=60)

                                     CTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGG                                                         <  SRR4302533.5627640/94‑1 (MQ=60)

                                     CTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGG                                                         >  SRR4302533.6077465/1‑94 (MQ=60)

                                     CTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAAGCGG                                                         >  SRR4302533.881369/1‑94 (MQ=60)

                                      TGTCCAGCATCAGTAATGACATGTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGC                                                        <  SRR4302533.5993593/94‑1 (MQ=60)

                                       GTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCC                                                       >  SRR4302533.5988905/1‑94 (MQ=60)

                                       GTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCC                                                       >  SRR4302533.3789925/1‑94 (MQ=60)

                                        TCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCTGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCT                                                      <  SRR4302533.172300/94‑1 (MQ=60)

                                        TCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCT                                                      >  SRR4302533.964619/1‑94 (MQ=60)

                                        TCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCT                                                      <  SRR4302533.662113/94‑1 (MQ=60)

                                         CCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTC                                                     >  SRR4302533.2620161/1‑94 (MQ=60)

                                          CAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCG                                                    <  SRR4302533.6047461/94‑1 (MQ=60)

                                          CAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCG                                                    >  SRR4302533.4530987/1‑94 (MQ=60)

                                          CAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCG                                                    <  SRR4302533.2797226/94‑1 (MQ=60)

                                          CAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCG                                                    >  SRR4302533.143487/1‑94 (MQ=60)

                                           AGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGG                                                   >  SRR4302533.1613926/1‑94 (MQ=60)

                                           AGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGG                                                   >  SRR4302533.5035757/1‑94 (MQ=60)

                                            GCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGC                                                  >  SRR4302533.4513299/1‑94 (MQ=60)

                                             CATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCA                                                 >  SRR4302533.1788375/1‑94 (MQ=60)

                                             CATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCA                                                 <  SRR4302533.4362267/94‑1 (MQ=60)

                                             CATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCA                                                 <  SRR4302533.643546/94‑1 (MQ=60)

                                             CATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGGTAAGCCGCGCTGATAGGCGGCCTCGGCG                                                 >  SRR4302533.1932463/1‑94 (MQ=60)

                                              ATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAG                                                >  SRR4302533.5244295/1‑94 (MQ=60)

                                               TCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGC                                               <  SRR4302533.5081824/94‑1 (MQ=60)

                                               TCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGC                                               >  SRR4302533.658733/1‑94 (MQ=60)

                                               TCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGC                                               >  SRR4302533.5284740/1‑94 (MQ=60)

                                               TCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGC                                               >  SRR4302533.6105358/1‑94 (MQ=60)

                                                CAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCG                                              <  SRR4302533.5201602/94‑1 (MQ=60)

                                                 AGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGC                                             >  SRR4302533.1893440/1‑94 (MQ=60)

                                                 AGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGC                                             >  SRR4302533.2548275/1‑94 (MQ=60)

                                                 AGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGC                                             >  SRR4302533.5826702/1‑94 (MQ=60)

                                                 AGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGC                                             >  SRR4302533.5889139/1‑94 (MQ=60)

                                                      TGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGG                                        >  SRR4302533.3129833/1‑94 (MQ=60)

                                                         CATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTA                                     <  SRR4302533.21578/94‑1 (MQ=60)

                                                         CATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTA                                     >  SRR4302533.5027163/1‑94 (MQ=60)

                                                             TCTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGC                                 <  SRR4302533.4744571/94‑1 (MQ=60)

                                                              CTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCG                                >  SRR4302533.4522772/1‑94 (MQ=60)

                                                              CTTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCG                                <  SRR4302533.1325806/94‑1 (MQ=60)

                                                               TTCGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGC                               >  SRR4302533.3531150/1‑94 (MQ=60)

                                                                 CGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGT                             <  SRR4302533.5360753/94‑1 (MQ=60)

                                                                 CGGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGGAAAGCGCGG                             >  SRR4302533.1288042/1‑94 (MQ=60)

                                                                  GGCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTG                            <  SRR4302533.353923/94‑1 (MQ=60)

                                                                   GCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGG                           <  SRR4302533.4376300/94‑1 (MQ=60)

                                                                   GCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGG                           >  SRR4302533.5665757/1‑94 (MQ=60)

                                                                   GCAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGG                           <  SRR4302533.4602094/94‑1 (MQ=60)

                                                                    CAAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGC                          >  SRR4302533.857002/1‑94 (MQ=60)

                                                                     AAGCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCT                         >  SRR4302533.4108104/1‑94 (MQ=60)

                                                                       GCACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTC                       <  SRR4302533.1914205/94‑1 (MQ=60)

                                                                        CACTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCC                      >  SRR4302533.1708402/1‑94 (MQ=60)

                                                                          CTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCAC                    >  SRR4302533.1011020/1‑94 (MQ=60)

                                                                          CTGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCAC                    <  SRR4302533.1560709/94‑1 (MQ=60)

                                                                           TGGCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACG                   <  SRR4302533.3167356/94‑1 (MQ=60)

                                                                             GCAACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCG                 <  SRR4302533.3347567/94‑1 (MQ=60)

                                                                               AACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTT               >  SRR4302533.3293469/1‑94 (MQ=60)

                                                                                ACCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGCTC              >  SRR4302533.4884959/1‑94 (MQ=60)

                                                                                 CCGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCA             >  SRR4302533.1413981/1‑94 (MQ=60)

                                                                                  CGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCTCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAG            >  SRR4302533.6116572/1‑94 (MQ=60)

                                                                                  CGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAG            >  SRR4302533.4870648/1‑94 (MQ=60)

                                                                                  CGGGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGAGCTGGGTAAAGCGCGagggttctcagcgctcag            >  SRR4302533.1735761/1‑76 (MQ=60)

                                                                                  CGGGCTTCGGCGGCCTGTAAGCGGCTGGGTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAG            >  SRR4302533.4069751/1‑94 (MQ=60)

                                                                                    GGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCC          >  SRR4302533.3446536/1‑94 (MQ=60)

                                                                                    GGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCC          >  SRR4302533.2373486/1‑94 (MQ=60)

                                                                                    GGCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCC          >  SRR4302533.4802050/1‑94 (MQ=60)

                                                                                     GCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTTCACGCGTTCAGCCT         >  SRR4302533.1428739/1‑94 (MQ=60)

                                                                                     GCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCT         <  SRR4302533.5668339/94‑1 (MQ=60)

                                                                                     GCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCT         <  SRR4302533.5633137/94‑1 (MQ=60)

                                                                                     GCTTCGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCT         >  SRR4302533.2025073/1‑94 (MQ=60)

                                                                                         CGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCAT     >  SRR4302533.5286718/1‑94 (MQ=60)

                                                                                         CGGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCAT     <  SRR4302533.2960841/94‑1 (MQ=60)

                                                                                          GGCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCATT    >  SRR4302533.3948635/1‑94 (MQ=60)

                                                                                           GCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACTCGTTCAGCCTGCATTT   <  SRR4302533.2126192/94‑1 (MQ=60)

                                                                                           GCGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCATTT   <  SRR4302533.5461130/94‑1 (MQ=60)

                                                                                            CGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCATTTC  <  SRR4302533.4876684/94‑1 (MQ=60)

CGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGGCAAGCACTGGCAACCGGGCTTCGGTGGCCTGTAAGCGGCTGGTTAAGCCGCGCTGATAGGCGGCCTCGGCAGCGCGCTGGGTAAAGCGCGTGGCTTCCACGCGTTCAGCCTGCATTTC  >  NC_000913/4297188‑4297373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`