Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,382,443	A→G	T357A (ACG→GCG)	yjeM →	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,382,443	0	A	G	100.0%	741.3 / NA	231	T357A (ACG→GCG)	yjeM	putative transport
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (117/114); total (117/114)

Only 100 of 239 total aligned reads displayed.

CGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT  >  NC_000913/4382356‑4382532

 gTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGa                                                                                     >  2:3405285/1‑93 (MQ=255)

  tATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaa                                                                                    >  2:2980809/1‑93 (MQ=255)

   aTTACTGGACTTTCGTTGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaaa                                                                                   >  2:5024972/1‑93 (MQ=255)

   aTTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaaa                                                                                   >  2:4786343/1‑93 (MQ=255)

   aTTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGaaa                                                                                   >  1:2285743/1‑93 (MQ=255)

      aCTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCa                                                                                >  2:5786607/1‑93 (MQ=255)

       cTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCAt                                                                               <  1:3944022/93‑1 (MQ=255)

         ggACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATtg                                                                             >  1:5257216/1‑93 (MQ=255)

           aCTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATtgtg                                                                           <  1:5434308/93‑1 (MQ=255)

           aCTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATtgtg                                                                           <  1:6023977/93‑1 (MQ=255)

           aCTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATtgtg                                                                           >  2:3187690/1‑93 (MQ=255)

             tttCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGc                                                                         >  1:208497/1‑93 (MQ=255)

             tttCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGc                                                                         >  2:5558613/1‑93 (MQ=255)

               tCGATGCTCCCCGCCTATACCGGTGCGTTCTGTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCg                                                                       <  2:2886263/93‑1 (MQ=255)

                 gATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGa                                                                     >  1:445686/1‑93 (MQ=255)

                 gATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGa                                                                     >  2:1073684/1‑93 (MQ=255)

                  aTGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGaa                                                                    <  1:5889434/93‑1 (MQ=255)

                  aTGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGaa                                                                    >  1:3692396/1‑93 (MQ=255)

                   tGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAc                                                                   >  1:3152104/1‑93 (MQ=255)

                   tGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAc                                                                   <  1:3540204/93‑1 (MQ=255)

                   tGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAc                                                                   <  1:6264352/93‑1 (MQ=255)

                    gTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAcc                                                                  >  2:3327004/1‑93 (MQ=255)

                     ttCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCg                                                                 >  2:2806247/1‑93 (MQ=255)

                     ttCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCg                                                                 >  1:3099371/1‑93 (MQ=255)

                      tCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGa                                                                >  1:727401/1‑93 (MQ=255)

                       ccTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGAt                                                               >  2:67459/1‑93 (MQ=255)

                        cTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAGGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATg                                                              <  1:4087757/93‑1 (MQ=255)

                        cTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATg                                                              >  1:5003966/1‑93 (MQ=255)

                         tCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATgc                                                             >  1:1233907/1‑92 (MQ=255)

                         tCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGa                                                             >  2:3881377/1‑93 (MQ=255)

                         tCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGa                                                             <  2:315878/93‑1 (MQ=255)

                            ccTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGAcgc                                                          >  1:5127716/1‑93 (MQ=255)

                              tataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACgcgc                                                        >  2:2945539/1‑93 (MQ=255)

                              tataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACgcgc                                                        >  1:580272/1‑93 (MQ=255)

                              tataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGGGGCCGGAACAGATGACgcgc                                                        >  2:6033955/1‑93 (MQ=255)

                               ataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGcc                                                       <  2:4505412/93‑1 (MQ=255)

                               ataCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGcc                                                       >  2:1334474/1‑93 (MQ=255)

                                taCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCCTTGTGGCCGGACCCGATGACGCGCCt                                                      >  2:5117968/1‑93 (MQ=255)

                                taCCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCt                                                      <  1:788317/93‑1 (MQ=255)

                                   cGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGaa                                                   <  1:5374641/93‑1 (MQ=255)

                                   cGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGaa                                                   <  1:6075443/93‑1 (MQ=255)

                                    ggTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAt                                                  >  2:2285671/1‑93 (MQ=255)

                                     gTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATg                                                 >  1:4710639/1‑93 (MQ=255)

                                     gTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATg                                                 <  1:4250650/93‑1 (MQ=255)

                                      tGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGCATgg                                                >  1:5098147/1‑92 (MQ=255)

                                      tGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGc                                                <  1:1130327/93‑1 (MQ=255)

                                       gCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCg                                               >  2:1956663/1‑93 (MQ=255)

                                       gCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCg                                               >  1:5297955/1‑93 (MQ=255)

                                       gCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCg                                               >  2:5853956/1‑93 (MQ=255)

                                        cGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGa                                              <  2:2229432/93‑1 (MQ=255)

                                         gTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGAt                                             <  1:4345888/93‑1 (MQ=255)

                                         gTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGAt                                             >  2:4727792/1‑93 (MQ=255)

                                         gTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGAt                                             <  2:5231052/93‑1 (MQ=255)

                                           tCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATgg                                           <  2:4153944/93‑1 (MQ=255)

                                           tCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATgg                                           >  2:803230/1‑93 (MQ=255)

                                           tCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGACGGAACCGATGACGCGCCTGAATGCGATgg                                           >  2:402988/1‑93 (MQ=255)

                                            cTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATggg                                          <  2:5586676/93‑1 (MQ=255)

                                             tttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATgggg                                         >  1:2834976/1‑93 (MQ=255)

                                             tttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATgggg                                         >  1:2395849/1‑93 (MQ=255)

                                             tttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATgggg                                         <  1:882829/93‑1 (MQ=255)

                                              ttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGa                                        <  1:381247/93‑1 (MQ=255)

                                              ttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGa                                        <  1:3825027/93‑1 (MQ=255)

                                              ttACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGa                                        <  1:4585621/93‑1 (MQ=255)

                                                aCGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATg                                      >  1:361586/1‑93 (MQ=255)

                                                  gCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGcc                                    >  2:4233231/1‑93 (MQ=255)

                                                    tttGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGt                                  >  2:354814/1‑93 (MQ=255)

                                                     ttGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCTATGGGGATGCCGTc                                 >  2:4215844/1‑93 (MQ=255)

                                                     ttGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTc                                 <  2:491201/93‑1 (MQ=255)

                                                      tGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCt                                <  1:3773927/93‑1 (MQ=255)

                                                        cTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTAt                              >  2:2580843/1‑93 (MQ=255)

                                                         tATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATc                             >  1:1651643/1‑93 (MQ=255)

                                                         tATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATc                             <  2:116182/93‑1 (MQ=255)

                                                          aTTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCg                            >  1:3462039/1‑93 (MQ=255)

                                                           ttCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGc                           >  1:5678238/1‑93 (MQ=255)

                                                              aCCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAt                        <  2:4539953/93‑1 (MQ=255)

                                                              aCCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAt                        >  2:3752737/1‑93 (MQ=255)

                                                              aCCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAt                        <  1:1954190/93‑1 (MQ=255)

                                                               ccGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAtg                       >  1:4881315/1‑93 (MQ=255)

                                                               ccGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAtg                       >  1:1458748/1‑93 (MQ=255)

                                                                cGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGATGCGCCTGAATGCGATGGGGATGCCGACTATCGCCAtgg                      >  2:6003622/1‑92 (MQ=255)

                                                                 gTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCAtgtg                     <  2:4607593/93‑1 (MQ=255)

                                                                   tGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGa                   <  1:1369196/93‑1 (MQ=255)

                                                                   tGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGa                   <  1:3252160/93‑1 (MQ=255)

                                                                    gAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGAt                  <  1:4786343/93‑1 (MQ=255)

                                                                    gAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGAt                  <  1:991058/93‑1 (MQ=255)

                                                                       atccATCATCCAGGGGGCGCCGAAAGCATGGTGCCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGGCGATCGCCATGTGGATGCa               <  2:2458501/91‑1 (MQ=255)

                                                                       aGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCa               >  1:3120016/1‑93 (MQ=255)

                                                                       aGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCa               <  2:172871/93‑1 (MQ=255)

                                                                        gCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAg              >  1:1008398/1‑93 (MQ=255)

                                                                           atcatcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGc           <  2:6210865/93‑1 (MQ=255)

                                                                            tcatcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCg          <  2:2551613/93‑1 (MQ=255)

                                                                              atcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCggg        <  1:6217995/93‑1 (MQ=255)

                                                                               tcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggt       <  2:536322/93‑1 (MQ=255)

                                                                               tcCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggt       >  2:4109576/1‑93 (MQ=255)

                                                                                ccAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggtt      <  1:2643742/93‑1 (MQ=255)

                                                                                 cAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttg     <  1:2950446/93‑1 (MQ=255)

                                                                                 cAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttg     >  2:2647613/1‑93 (MQ=255)

                                                                                   ggggGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttggt   >  2:3273989/1‑93 (MQ=255)

                                                                                   ggggGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttggt   >  2:1606980/1‑93 (MQ=255)

                                                                                    ggggCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGggttggtt  >  2:4435461/1‑93 (MQ=255)

CGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT  >  NC_000913/4382356‑4382532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTTACT  >  NC_000913/4382356‑4382535

CGTTTTACTGGACTTTCGATGTGCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGA                                                                                        <  SRR4302533.3771465/94‑1 (MQ=60)

  TATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAA                                                                                      >  SRR4302533.5255408/1‑94 (MQ=60)

  TATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAA                                                                                      >  SRR4302533.2299891/1‑94 (MQ=60)

   ATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAG                                                                                     >  SRR4302533.1195530/1‑94 (MQ=60)

   ATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAG                                                                                     <  SRR4302533.3224281/94‑1 (MQ=60)

      TCTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCAT                                                                                  <  SRR4302533.3890673/94‑1 (MQ=60)

       CTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATT                                                                                 <  SRR4302533.3968081/94‑1 (MQ=60)

        TGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTG                                                                                >  SRR4302533.5288787/1‑94 (MQ=60)

         GGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGT                                                                               <  SRR4302533.5102452/94‑1 (MQ=60)

          gactgccaATGTTCCTCGCCTATACCGGTGCGTTCTTTACGGTTTGCGATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTG                                                                              <  SRR4302533.1351262/86‑1 (MQ=60)

          GACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTG                                                                              <  SRR4302533.45294/94‑1 (MQ=60)

           ACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGG                                                                             <  SRR4302533.6060482/94‑1 (MQ=60)

           ACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGG                                                                             <  SRR4302533.5467034/94‑1 (MQ=60)

            CTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGC                                                                            >  SRR4302533.209817/1‑94 (MQ=60)

                CGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGA                                                                        >  SRR4302533.3583893/1‑94 (MQ=60)

                CGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGA                                                                        >  SRR4302533.448352/1‑94 (MQ=60)

                 GATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAA                                                                       <  SRR4302533.1661879/94‑1 (MQ=60)

                 GATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAA                                                                       >  SRR4302533.3715082/1‑94 (MQ=60)

                  ATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAC                                                                      <  SRR4302533.1697428/94‑1 (MQ=60)

                  ATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAC                                                                      <  SRR4302533.5925015/94‑1 (MQ=60)

                  ATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAAC                                                                      >  SRR4302533.3171483/1‑94 (MQ=60)

                   TGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACC                                                                     <  SRR4302533.6301793/94‑1 (MQ=60)

                   TGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACC                                                                     <  SRR4302533.3562018/94‑1 (MQ=60)

                    GTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCG                                                                    <  SRR4302533.3020127/94‑1 (MQ=60)

                    GTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCG                                                                    >  SRR4302533.3118426/1‑94 (MQ=60)

                    GTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCG                                                                    <  SRR4302533.3874677/94‑1 (MQ=60)

                     TTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGA                                                                   >  SRR4302533.731698/1‑94 (MQ=60)

                      TCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCGGGAACCGCT                                                                  >  SRR4302533.5897017/1‑94 (MQ=60)

                      TCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGAT                                                                  >  SRR4302533.3841091/1‑94 (MQ=60)

                       CCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATG                                                                 >  SRR4302533.5034293/1‑94 (MQ=60)

                       CCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATG                                                                 >  SRR4302533.4060037/1‑94 (MQ=60)

                        CTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAGGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGA                                                                <  SRR4302533.4112641/94‑1 (MQ=60)

                        CTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGC                                                                >  SRR4302533.1241287/1‑94 (MQ=60)

                        CTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGA                                                                <  SRR4302533.6330112/94‑1 (MQ=60)

                        CTCGCCTATACCGGTGCGTGCTTTACGCTTTGCTATTCACCGTTGAAATCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGA                                                                <  SRR4302533.593373/94‑1 (MQ=60)

                         TCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGAC                                                               <  SRR4302533.6287701/94‑1 (MQ=60)

                           GCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGC                                                             >  SRR4302533.5158694/1‑94 (MQ=60)

                           GCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGC                                                             >  SRR4302533.3806781/1‑94 (MQ=60)

                             CTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGC                                                           >  SRR4302533.583687/1‑94 (MQ=60)

                             CTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGC                                                           >  SRR4302533.5306271/1‑94 (MQ=60)

                              TATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCC                                                          >  SRR4302533.3755031/1‑94 (MQ=60)

                              TATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCC                                                          <  SRR4302533.5670742/94‑1 (MQ=60)

                                TACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTG                                                        <  SRR4302533.792949/94‑1 (MQ=60)

                                   CGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAT                                                     <  SRR4302533.6112191/94‑1 (MQ=60)

                                   CGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAAT                                                     <  SRR4302533.5406941/94‑1 (MQ=60)

                                    GGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATG                                                    <  SRR4302533.4932152/94‑1 (MQ=60)

                                    GGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATG                                                    >  SRR4302533.4739188/1‑94 (MQ=60)

                                     GTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGcatgg                                                   >  SRR4302533.5128948/1‑89 (MQ=60)

                                     GTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGC                                                   <  SRR4302533.4276296/94‑1 (MQ=60)

                                      TGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCG                                                  <  SRR4302533.1137044/94‑1 (MQ=60)

                                      TGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCG                                                  >  SRR4302533.5329691/1‑94 (MQ=60)

                                        CGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGAT                                                <  SRR4302533.3139410/94‑1 (MQ=60)

                                         GTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATG                                               <  SRR4302533.2999640/94‑1 (MQ=60)

                                         GTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATG                                               <  SRR4302533.4372083/94‑1 (MQ=60)

                                         GTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATG                                               >  SRR4302533.1400394/1‑94 (MQ=60)

                                          TTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                              <  SRR4302533.4781018/94‑1 (MQ=60)

                                          TTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                              >  SRR4302533.3281252/1‑94 (MQ=60)

                                          TTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                              <  SRR4302533.810826/94‑1 (MQ=60)

                                          TTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGG                                              >  SRR4302533.2759851/1‑94 (MQ=60)

                                           TCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGG                                             <  SRR4302533.989297/94‑1 (MQ=60)

                                           TCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGG                                             <  SRR4302533.5891383/94‑1 (MQ=60)

                                            CTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGG                                            >  SRR4302533.826503/1‑94 (MQ=60)

                                            CTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGG                                            >  SRR4302533.2852424/1‑94 (MQ=60)

                                            CTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGG                                            >  SRR4302533.2410637/1‑94 (MQ=60)

                                            CTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGG                                            <  SRR4302533.2138151/94‑1 (MQ=60)

                                             TTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGA                                           >  SRR4302533.5435183/1‑94 (MQ=60)

                                             TTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGA                                           <  SRR4302533.888015/94‑1 (MQ=60)

                                             TTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGA                                           >  SRR4302533.480965/1‑94 (MQ=60)

                                              TTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGAT                                          <  SRR4302533.383544/94‑1 (MQ=60)

                                              TTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGAT                                          <  SRR4302533.1618286/94‑1 (MQ=60)

                                              TTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGAT                                          <  SRR4302533.2036611/94‑1 (MQ=60)

                                              TTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGAT                                          <  SRR4302533.4613401/94‑1 (MQ=60)

                                              TTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGAT                                          <  SRR4302533.3848412/94‑1 (MQ=60)

                                               TACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATG                                         >  SRR4302533.363783/1‑94 (MQ=60)

                                                  GCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCG                                      >  SRR4302533.4637570/1‑94 (MQ=60)

                                                   CTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGT                                     >  SRR4302533.2204095/1‑94 (MQ=60)

                                                   CTTTGCTATTCACCGTGGAAAGCCGTCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGT                                     <  SRR4302533.6082005/94‑1 (MQ=60)

                                                    TTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTC                                    <  SRR4302533.4571826/94‑1 (MQ=60)

                                                    TTTGCTATTCACCGTTGAAAGCCATCATCCAGGGAGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTC                                    >  SRR4302533.3516473/1‑94 (MQ=60)

                                                     TTGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCT                                   <  SRR4302533.1091859/94‑1 (MQ=60)

                                                      TGCTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTA                                  <  SRR4302533.3797061/94‑1 (MQ=60)

                                                        CTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATC                                >  SRR4302533.5353106/1‑94 (MQ=60)

                                                        CTATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATC                                >  SRR4302533.1661647/1‑94 (MQ=60)

                                                         TATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCG                               >  SRR4302533.5761448/1‑94 (MQ=60)

                                                         TATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCG                               >  SRR4302533.3483410/1‑94 (MQ=60)

                                                          ATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGC                              >  SRR4302533.5712532/1‑94 (MQ=60)

                                                          ATTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGC                              >  SRR4302533.4328245/1‑94 (MQ=60)

                                                           TTCACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCC                             >  SRR4302533.367830/1‑94 (MQ=60)

                                                              ACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGCTGCCGACTATCGCCCTG                          >  SRR4302533.23579/1‑94 (MQ=60)

                                                              ACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATG                          >  SRR4302533.4910888/1‑94 (MQ=60)

                                                              ACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATG                          <  SRR4302533.1966097/94‑1 (MQ=60)

                                                              ACCGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATG                          >  SRR4302533.1467543/1‑94 (MQ=60)

                                                                CGTTGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGCTGCCGTCTATCGCCATGTG                        >  SRR4302533.4209152/1‑94 (MQ=60)

                                                                   TGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGAT                     <  SRR4302533.1377427/94‑1 (MQ=60)

                                                                   TGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGAT                     >  SRR4302533.255337/1‑94 (MQ=60)

                                                                   TGAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGAT                     <  SRR4302533.3272214/94‑1 (MQ=60)

                                                                    GAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATG                    <  SRR4302533.774004/94‑1 (MQ=60)

                                                                    GAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATG                    <  SRR4302533.4815330/94‑1 (MQ=60)

                                                                    GAAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATG                    <  SRR4302533.996854/94‑1 (MQ=60)

                                                                     AAAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGC                   >  SRR4302533.720958/1‑94 (MQ=60)

                                                                      AAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCA                  >  SRR4302533.5071541/1‑94 (MQ=60)

                                                                      AAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCA                  >  SRR4302533.3139202/1‑94 (MQ=60)

                                                                      AAGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCA                  <  SRR4302533.5152859/94‑1 (MQ=60)

                                                                       AGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAG                 >  SRR4302533.26690/1‑94 (MQ=60)

                                                                       AGCCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAG                 >  SRR4302533.1014296/1‑94 (MQ=60)

                                                                         CCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTG               <  SRR4302533.6061249/94‑1 (MQ=60)

                                                                         CCATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCAATGTGGATGGAGTG               >  SRR4302533.5164848/1‑94 (MQ=60)

                                                                           ATCATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCG             <  SRR4302533.3180418/94‑1 (MQ=60)

                                                                              ATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGT          <  SRR4302533.6255279/94‑1 (MQ=60)

                                                                              ATCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGT          >  SRR4302533.4395867/1‑94 (MQ=60)

                                                                               TCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTT         <  SRR4302533.6253848/94‑1 (MQ=60)

                                                                               TCCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTT         <  SRR4302533.1297627/94‑1 (MQ=60)

                                                                                CCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTG        <  SRR4302533.2659986/94‑1 (MQ=60)

                                                                                CCAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTG        >  SRR4302533.1280203/1‑94 (MQ=60)

                                                                                 CAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGG       <  SRR4302533.2901460/94‑1 (MQ=60)

                                                                                 CAGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGG       <  SRR4302533.2968487/94‑1 (MQ=60)

                                                                                  AGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGT      <  SRR4302533.3506796/94‑1 (MQ=60)

                                                                                  AGGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGCTGGT      >  SRR4302533.3136900/1‑94 (MQ=60)

                                                                                   GGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT     >  SRR4302533.4832186/1‑94 (MQ=60)

                                                                                   GGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT     >  SRR4302533.4125768/1‑94 (MQ=60)

                                                                                   GGGGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTT     <  SRR4302533.5435610/94‑1 (MQ=60)

                                                                                     GGGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTTAC   >  SRR4302533.3854113/1‑94 (MQ=60)

                                                                                      GGCGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTTACT  <  SRR4302533.533990/94‑1 (MQ=60)

CGTATTACTGGACTTTCGATGTTCCTCGCCTATACCGGTGCGTTCTTTACGCTTTGCTATTCACCGTTGAAAGCCATCATCCAGGGGACGCCGAAAGCATTGTGGCCGGAACCGATGACGCGCCTGAATGCGATGGGGATGCCGTCTATCGCCATGTGGATGCAGTGCGGGTTGGTTACT  >  NC_000913/4382356‑4382535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`