Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,460,914 |
T→C |
Y457C (TAC→TGC) |
treC ← |
trehalase 6‑P hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,460,914 | 0 | T | C | 99.7%
| 924.7
/ ‑5.0
| 283 | Y457C (TAC→TGC) | treC | trehalase 6‑P hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (155/127); minor base A (1/0); total (156/127) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
Only 100 of 287 total aligned reads displayed.
ATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGTAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGT > NC_000913/4460825‑4461002
|
aCAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAac > 2:6015058/1‑93 (MQ=255)
cAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAaca > 2:4807839/1‑93 (MQ=255)
aGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAacac > 2:4988619/1‑93 (MQ=255)
gggCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACAcc > 1:2950533/1‑93 (MQ=255)
gggCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACAcc < 2:3751052/93‑1 (MQ=255)
gggCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACAcc < 1:2476915/93‑1 (MQ=255)
gggCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACAcc < 2:39721/93‑1 (MQ=255)
ggCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCg < 1:5373402/93‑1 (MQ=255)
ggCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCg < 1:3193440/93‑1 (MQ=255)
gCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGa > 2:1515335/1‑93 (MQ=255)
gCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGa > 2:5529065/1‑93 (MQ=255)
gCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGa < 1:2714137/93‑1 (MQ=255)
cTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAg < 1:4345196/93‑1 (MQ=255)
tGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAgg < 2:3676240/93‑1 (MQ=255)
gTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGa > 1:1834515/1‑93 (MQ=255)
gTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGa < 1:4840938/93‑1 (MQ=255)
gTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGa > 1:4032184/1‑93 (MQ=255)
tttGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGaa > 1:946013/1‑93 (MQ=255)
tttGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGGAGGTGCAAAACACCGAGGaa > 1:2098725/1‑93 (MQ=255)
agcagATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCACAACACCGAGGAATCATCg > 2:3702465/1‑93 (MQ=255)
agcagATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCg > 2:4435334/1‑93 (MQ=255)
gATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCa > 2:5291917/1‑93 (MQ=255)
gATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCa > 2:1325528/1‑93 (MQ=255)
tCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAgc < 1:1397236/93‑1 (MQ=255)
cTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAgcgc > 2:4754988/1‑93 (MQ=255)
cTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAgcgc > 1:1543900/1‑93 (MQ=255)
tGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGcgcg > 2:3362482/1‑93 (MQ=255)
ggTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCgg > 2:1021498/1‑93 (MQ=255)
ggTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCgg > 2:6172717/1‑93 (MQ=255)
gTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGc < 1:6087733/93‑1 (MQ=255)
gTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGc < 1:4194619/93‑1 (MQ=255)
aaTTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCtt < 1:1152032/93‑1 (MQ=255)
aaTTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCtt < 1:425405/93‑1 (MQ=255)
aaTTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCtt > 1:4162005/1‑93 (MQ=255)
aTTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTc > 2:2394044/1‑93 (MQ=255)
aTTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTc < 1:2852191/93‑1 (MQ=255)
tGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACTGAGGAATCATCGGCCAGCGCGGCTTCTa < 1:3527911/93‑1 (MQ=255)
cccATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGt > 1:221800/1‑93 (MQ=255)
ccATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGtt > 2:3768301/1‑93 (MQ=255)
cATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTg > 1:4243533/1‑93 (MQ=255)
cATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTg > 2:825312/1‑93 (MQ=255)
aTGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGa < 1:1597787/93‑1 (MQ=255)
aTGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGa > 2:5207747/1‑93 (MQ=255)
aTGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGa > 1:1999197/1‑93 (MQ=255)
aTGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGa > 2:231689/1‑93 (MQ=255)
gTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGAtt < 1:5462728/93‑1 (MQ=255)
gTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGAtt > 2:3408603/1‑93 (MQ=255)
tCAGGATGGCTTCCTTCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGAttt < 1:1757924/93‑1 (MQ=255)
tCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGAttt < 2:5903307/93‑1 (MQ=255)
tCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGATGAttt > 1:4515427/1‑93 (MQ=255)
cAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATttg < 1:4898775/93‑1 (MQ=255)
ggATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATttgtt < 2:1282792/93‑1 (MQ=255)
ggATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCAGCCAGCGCGGCTTCTACGTTGATttgtt > 1:101018/1‑93 (MQ=255)
ggCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATa < 2:1864724/93‑1 (MQ=255)
gCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAg < 1:5250961/93‑1 (MQ=255)
gCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAg > 1:578219/1‑93 (MQ=255)
gCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAg > 1:636248/1‑93 (MQ=255)
cTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGt < 1:3636535/93‑1 (MQ=255)
cTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGt < 1:3784976/93‑1 (MQ=255)
cTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGt < 2:3037944/93‑1 (MQ=255)
cTTCCTGCTTACGCAGTGCGATTAACTTTTGGGAGGTGCAAAACACCCAGGAATCATCGGCCAGCGCGGCTTCTACGTTGCTTTGTTGATAGt > 1:477787/1‑93 (MQ=255)
ttCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGtt > 2:5870098/1‑93 (MQ=255)
tgccTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGtt < 2:3909628/91‑1 (MQ=255)
tCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTa > 2:2726063/1‑93 (MQ=255)
tCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTa > 1:2184692/1‑93 (MQ=255)
tCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTa < 1:5718560/93‑1 (MQ=255)
tCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTa > 2:3853017/1‑93 (MQ=255)
tCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTa < 1:3278366/93‑1 (MQ=255)
tCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTa > 1:2902277/1‑93 (MQ=255)
ccTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTAt < 2:4070595/93‑1 (MQ=255)
ccTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTAt > 2:3787310/1‑93 (MQ=255)
cTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTTGTGATAGTTATc > 1:5623926/1‑93 (MQ=255)
cTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATc > 1:1477661/1‑93 (MQ=255)
cTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATc > 1:5200071/1‑93 (MQ=255)
cTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATc > 1:5118564/1‑93 (MQ=255)
cTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATc > 2:1759677/1‑93 (MQ=255)
gCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGc < 2:4681820/93‑1 (MQ=255)
cTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGcc < 2:5673944/93‑1 (MQ=255)
tACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCa > 2:3600752/1‑93 (MQ=255)
aCGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAg < 2:2925888/93‑1 (MQ=255)
aCGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAg < 2:748201/93‑1 (MQ=255)
aCGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAg < 2:455048/93‑1 (MQ=255)
aCGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAg > 2:2821751/1‑93 (MQ=255)
cGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAgg > 2:3252574/1‑93 (MQ=255)
gCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGc > 1:2245177/1‑93 (MQ=255)
gCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGc > 2:6263732/1‑93 (MQ=255)
gCAATGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGc > 1:772177/1‑93 (MQ=255)
cAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGcc > 1:622074/1‑93 (MQ=255)
aGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCa > 2:4648801/1‑93 (MQ=255)
gTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCaa > 1:3943662/1‑93 (MQ=255)
tGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAAt > 1:3993488/1‑93 (MQ=255)
gATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCa < 1:1185556/93‑1 (MQ=255)
gATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAAGCCAATCCa > 2:3553560/1‑93 (MQ=255)
aTTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCAc > 2:2582904/1‑93 (MQ=255)
ttAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACg > 2:156295/1‑93 (MQ=255)
ttAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACg > 2:24391/1‑93 (MQ=255)
tAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACgg > 2:2869978/1‑93 (MQ=255)
aaCTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGt < 1:3078043/93‑1 (MQ=255)
aCTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGtt < 2:3192721/93‑1 (MQ=255)
cTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTc < 2:1853261/93‑1 (MQ=255)
|
ATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGTAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGT > NC_000913/4460825‑4461002
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACAATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGTAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGTAAACC > NC_000913/4460821‑4461007
|
CACAATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGC > SRR4302533.4888039/1‑94 (MQ=60)
ACAATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCA < SRR4302533.4929332/94‑1 (MQ=60)
ACAATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCA < SRR4302533.3733483/94‑1 (MQ=60)
ACAATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCA < SRR4302533.5472178/94‑1 (MQ=60)
AATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAA > SRR4302533.4304106/1‑94 (MQ=60)
ATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAA > SRR4302533.2309003/1‑94 (MQ=60)
ACAGCGCTGTTTGGCAGCAGATCCTGGTAATTGCCCAATGTCAGGATGGCTTCCTGATTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACA < SRR4302533.3150939/94‑1 (MQ=60)
AGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACC > SRR4302533.2968574/1‑94 (MQ=60)
AGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACC > SRR4302533.4686742/1‑94 (MQ=60)
GGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCG > SRR4302533.2205327/1‑94 (MQ=60)
GGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCG < SRR4302533.2492191/94‑1 (MQ=60)
GGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCG < SRR4302533.5580661/94‑1 (MQ=60)
GGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGA < SRR4302533.3213084/94‑1 (MQ=60)
GGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGA < SRR4302533.5405689/94‑1 (MQ=60)
GCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAG < SRR4302533.2730803/94‑1 (MQ=60)
CTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGG < SRR4302533.4371382/94‑1 (MQ=60)
CTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGG < SRR4302533.3124584/94‑1 (MQ=60)
CTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGG > SRR4302533.1036095/1‑94 (MQ=60)
TGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGA > SRR4302533.1845711/1‑94 (MQ=60)
TGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGA > SRR4302533.6044242/1‑94 (MQ=60)
TGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGA < SRR4302533.641103/94‑1 (MQ=60)
TGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGA > SRR4302533.4056730/1‑94 (MQ=60)
GTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAA < SRR4302533.4870280/94‑1 (MQ=60)
GTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAA > SRR4302533.172259/1‑94 (MQ=60)
GTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAA > SRR4302533.951575/1‑94 (MQ=60)
GTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAA < SRR4302533.5457727/94‑1 (MQ=60)
GTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGGAGGTGCAAAACACCGAGGAA > SRR4302533.2111673/1‑94 (MQ=60)
TTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAAT < SRR4302533.1426249/94‑1 (MQ=60)
GGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCAT > SRR4302533.5313296/1‑94 (MQ=60)
GGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCAT < SRR4302533.651894/94‑1 (MQ=60)
GGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCAT > SRR4302533.2878240/1‑94 (MQ=60)
GCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATC < SRR4302533.43111/94‑1 (MQ=60)
CAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATAG > SRR4302533.401720/1‑94 (MQ=60)
GCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGC > SRR4302533.5749987/1‑94 (MQ=60)
AGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCA > SRR4302533.2556895/1‑94 (MQ=60)
AGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCA > SRR4302533.2430234/1‑94 (MQ=60)
GATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAG < SRR4302533.4034826/94‑1 (MQ=60)
TCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCG > SRR4302533.4859415/1‑94 (MQ=60)
TCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCG < SRR4302533.1405657/94‑1 (MQ=60)
CCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGC > SRR4302533.4982393/1‑94 (MQ=60)
CCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGC > SRR4302533.1553200/1‑94 (MQ=60)
TGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGG > SRR4302533.842240/1‑94 (MQ=60)
TGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGG < SRR4302533.4906087/94‑1 (MQ=60)
TGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGG < SRR4302533.1405965/94‑1 (MQ=60)
GGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGC > SRR4302533.3230459/1‑94 (MQ=60)
GTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCT < SRR4302533.4220009/94‑1 (MQ=60)
GTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCT > SRR4302533.1180437/1‑94 (MQ=60)
GTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCT < SRR4302533.6124533/94‑1 (MQ=60)
TAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTT > SRR4302533.4187225/1‑94 (MQ=60)
TAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTT < SRR4302533.1262348/94‑1 (MQ=60)
TAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTT > SRR4302533.2743105/1‑94 (MQ=60)
AATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTC < SRR4302533.427943/94‑1 (MQ=60)
AATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTC < SRR4302533.158913/94‑1 (MQ=60)
AATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTC > SRR4302533.3870703/1‑94 (MQ=60)
AATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTC > SRR4302533.6214570/1‑94 (MQ=60)
AATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTC < SRR4302533.1158931/94‑1 (MQ=60)
ATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCT < SRR4302533.2869736/94‑1 (MQ=60)
ATTGCCCCATGTAAGTATTGCTTCCTGCTGTCGTAGGGCTATTATCTGTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCT < SRR4302533.4822859/94‑1 (MQ=36)
TGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACTGAGGAATCATCGGCCAGCGCGGCTTCTAC < SRR4302533.3549656/94‑1 (MQ=60)
TGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTAC < SRR4302533.4855603/94‑1 (MQ=60)
GCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACG > SRR4302533.966851/1‑94 (MQ=60)
GCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACG > SRR4302533.5764082/1‑94 (MQ=60)
GCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACG < SRR4302533.2929774/94‑1 (MQ=60)
GCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACG < SRR4302533.2256014/94‑1 (MQ=60)
CCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGT > SRR4302533.3992073/1‑94 (MQ=60)
CCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGT > SRR4302533.223188/1‑94 (MQ=60)
CCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGT > SRR4302533.2174652/1‑94 (MQ=60)
CCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTG > SRR4302533.4269159/1‑94 (MQ=60)
CATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGA > SRR4302533.2011500/1‑94 (MQ=60)
ATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGAT < SRR4302533.1607461/94‑1 (MQ=60)
ATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGAT < SRR4302533.5484362/94‑1 (MQ=60)
TGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATT > SRR4302533.4045261/1‑94 (MQ=60)
GTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTT < SRR4302533.5495639/94‑1 (MQ=60)
GTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTT < SRR4302533.4586293/94‑1 (MQ=60)
GTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGATGATTT > SRR4302533.4542768/1‑94 (MQ=60)
TCAGGATGGCTTCCTTCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTG < SRR4302533.1768638/94‑1 (MQ=60)
TCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTG > SRR4302533.2175734/1‑94 (MQ=60)
CAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGT < SRR4302533.4928456/94‑1 (MQ=60)
CAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGT < SRR4302533.3225849/94‑1 (MQ=60)
CAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGT < SRR4302533.4509250/94‑1 (MQ=60)
AGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCAGCCAGCGCGGCTTCTACGTTGATTTGTT > SRR4302533.101646/1‑94 (MQ=60)
TGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATA < SRR4302533.299162/94‑1 (MQ=60)
TGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGGTGATTTGTTGATA > SRR4302533.4222421/1‑94 (MQ=60)
GGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAG > SRR4302533.639995/1‑94 (MQ=60)
GGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAG > SRR4302533.581629/1‑94 (MQ=60)
GCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGT > SRR4302533.1782883/1‑94 (MQ=60)
GCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGT < SRR4302533.5282514/94‑1 (MQ=60)
GCTTCCTGCTTACGCAGTGCGATTAACTTTTGGGAGGTGCAAAACACCCAGGAATCATCGGCCAGCGCGGCTTCTACGTTGCTTTGTTGATAGT > SRR4302533.480640/1‑94 (MQ=60)
CTTGCTGCTGACGCAGTGAGATTAACTTTTGGTAGGTGCAAAACGCCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTT < SRR4302533.1173566/94‑1 (MQ=60)
CTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTT < SRR4302533.3658896/94‑1 (MQ=60)
CTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTT < SRR4302533.3808150/94‑1 (MQ=60)
CTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTT < SRR4302533.3552378/94‑1 (MQ=60)
CTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTT > SRR4302533.1554791/1‑94 (MQ=60)
TTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTA > SRR4302533.2920105/1‑94 (MQ=60)
TTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTA < SRR4302533.5238092/94‑1 (MQ=60)
TTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTA < SRR4302533.4273882/94‑1 (MQ=60)
TTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTA > SRR4302533.1535605/1‑94 (MQ=60)
TTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTA > SRR4302533.2198159/1‑94 (MQ=60)
TTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTA < SRR4302533.2933688/94‑1 (MQ=60)
TCCTGCTTACGCAGTGCGATTATCTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTAT < SRR4302533.1646002/94‑1 (MQ=60)
TCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTAT < SRR4302533.5753091/94‑1 (MQ=60)
TCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTAT < SRR4302533.2096172/94‑1 (MQ=60)
TCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTAT < SRR4302533.4207322/94‑1 (MQ=60)
TCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTAT < SRR4302533.3298609/94‑1 (MQ=60)
CCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTTGTGATAGTTATC > SRR4302533.5657919/1‑94 (MQ=60)
CCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATC > SRR4302533.5231420/1‑94 (MQ=60)
CCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATC > SRR4302533.1486590/1‑94 (MQ=60)
CCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATC > SRR4302533.5149490/1‑94 (MQ=60)
GCTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATGGTTATCGCC > SRR4302533.4141606/1‑94 (MQ=60)
CTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCC > SRR4302533.2548412/1‑94 (MQ=60)
CTTACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCC > SRR4302533.2871150/1‑94 (MQ=60)
CTTACGCACTTCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCC < SRR4302533.2200981/94‑1 (MQ=60)
TACGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAG < SRR4302533.415700/94‑1 (MQ=60)
CGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGC > SRR4302533.6197644/1‑94 (MQ=60)
CGCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGC > SRR4302533.2259051/1‑94 (MQ=60)
CGCAATGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGC > SRR4302533.776720/1‑94 (MQ=60)
GCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCC < SRR4302533.4921230/94‑1 (MQ=60)
GCAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCC > SRR4302533.625729/1‑94 (MQ=60)
CAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCA > SRR4302533.6300933/1‑94 (MQ=60)
CAGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCA < SRR4302533.2240396/94‑1 (MQ=60)
AGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAA > SRR4302533.3800046/1‑94 (MQ=60)
AGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAA > SRR4302533.4951060/1‑94 (MQ=60)
AGTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAA > SRR4302533.3967718/1‑94 (MQ=60)
GTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAAT > SRR4302533.4389492/1‑94 (MQ=60)
GTGCGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAAT > SRR4302533.4017801/1‑94 (MQ=60)
CGATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGCTGATTTGTTGATAGTTATCGCCCAGGCCAATCCA > SRR4302533.3562344/1‑94 (MQ=60)
GATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCAC < SRR4302533.5721933/94‑1 (MQ=60)
GATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCAC < SRR4302533.3095926/94‑1 (MQ=60)
GATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCAC < SRR4302533.1192672/94‑1 (MQ=60)
GATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCAC < SRR4302533.4222089/94‑1 (MQ=60)
GATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCAC < SRR4302533.5579574/94‑1 (MQ=60)
ATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACG > SRR4302533.2106410/1‑94 (MQ=60)
ATTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACG < SRR4302533.6051508/94‑1 (MQ=60)
TTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGG > SRR4302533.4192389/1‑94 (MQ=60)
TTAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGG < SRR4302533.5810862/94‑1 (MQ=60)
TAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGT < SRR4302533.5297191/94‑1 (MQ=60)
TAACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGT > SRR4302533.3305756/1‑94 (MQ=60)
AACTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTT < SRR4302533.3096932/94‑1 (MQ=60)
CTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCG < SRR4302533.1497305/94‑1 (MQ=60)
CTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCG > SRR4302533.3821387/1‑94 (MQ=60)
CTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCG > SRR4302533.1909007/1‑94 (MQ=60)
CTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCG > SRR4302533.1272327/1‑94 (MQ=60)
CTTTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCG < SRR4302533.517572/94‑1 (MQ=60)
TTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCC < SRR4302533.1978257/94‑1 (MQ=60)
TTTGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCC < SRR4302533.3334738/94‑1 (MQ=60)
TGGTAGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAG < SRR4302533.5198781/94‑1 (MQ=60)
AGGTGCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGT > SRR4302533.802353/1‑94 (MQ=60)
GCAAACCACCGAGGAATCATCGCCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGTAAAC < SRR4302533.2983537/94‑1 (MQ=60)
GCAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGTAAAC > SRR4302533.2941055/1‑94 (MQ=60)
CAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGTAAACC > SRR4302533.6345496/1‑94 (MQ=60)
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CACAATACAGGGCTGTTTGGCAGCAGATCCTGGTAATTGCCCCATGTCAGGATGGCTTCCTGCTTACGCAGTGCGATTAACTTTTGGTAGGTGTAAAACACCGAGGAATCATCGGCCAGCGCGGCTTCTACGTTGATTTGTTGATAGTTATCGCCCAGGCCAATCCACGGTTCGCCAGCCGTAAACC > NC_000913/4460821‑4461007
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
