Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG > NC_000913/2460817‑2461002
|
GACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCC > SRR4302533.4127444/1‑94 (MQ=60)
AAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑T‑‑‑CTC‑C‑‑CCCCCCCCTGG < SRR4302533.5945272/94‑1 (MQ=60)
AACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctgg < SRR4302533.4057432/94‑6 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATTCC‑‑‑CC‑‑C‑‑CCCCCCCCTGGCT < SRR4302533.6034769/94‑1 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCT > SRR4302533.3037789/1‑94 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑CCTCCCCCCCCTGACT > SRR4302533.5632382/1‑94 (MQ=60)
CCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctgggc > SRR4302533.3949962/1‑87 (MQ=60)
TGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATT < SRR4302533.6070441/94‑1 (MQ=60)
TGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctcgccat > SRR4302533.1920479/1‑85 (MQ=60)
GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATT < SRR4302533.3938438/94‑1 (MQ=60)
GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATT < SRR4302533.2355708/94‑1 (MQ=60)
AAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCccggcttattt > SRR4302533.1700454/1‑83 (MQ=60)
AGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGT < SRR4302533.1048347/94‑1 (MQ=60)
AGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTG < SRR4302533.3371569/94‑1 (MQ=60)
AAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAAAGTTTTCTTTTCCGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCT < SRR4302533.2390606/94‑1 (MQ=60)
AGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTC > SRR4302533.2723157/1‑94 (MQ=60)
AGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCT‑GCTATTGTTCGCTCA > SRR4302533.3213041/1‑94 (MQ=60)
ATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATAC < SRR4302533.6232783/94‑1 (MQ=60)
ATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGCCTATTGTGCGCTCCTAC > SRR4302533.3553314/1‑94 (MQ=60)
ATATTTTCAGGCGTTCTGCTCGGCCTTCTCAAAGAGTTTTCTTTTCTGCATTTCCAGGATACA‑‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATAC < SRR4302533.5050240/94‑1 (MQ=60)
TATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACA < SRR4302533.5771957/94‑1 (MQ=60)
TATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACAC < SRR4302533.6111692/94‑1 (MQ=60)
TTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACT < SRR4302533.1649534/94‑1 (MQ=60)
TTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGATACA‑‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTC < SRR4302533.6195342/94‑1 (MQ=60)
TTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑C‑‑‑CT‑‑C‑‑CCCCCCCCccaggccattcttcgcccctccaccca > SRR4302533.538693/1‑67 (MQ=60)
TTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGCCTTTTGTGCGCTCATACCCTCA > SRR4302533.538692/1‑94 (MQ=60)
TCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCctcgcgctttgctgcttctttcctccaa > SRR4302533.1970273/1‑66 (MQ=60)
CAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctcgctcttgcgcgctcataaactcaat > SRR4302533.1921435/1‑65 (MQ=60)
AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.2135067/94‑1 (MQ=60)
AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.1238298/94‑1 (MQ=60)
AGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.1351240/94‑1 (MQ=60)
AGGCGTTCTGCCCGTCCTTCTCAAAGAGTTTACTTTTCGGCATTTCCAGGATCCC‑‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAAT < SRR4302533.690978/94‑1 (MQ=60)
GCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTA < SRR4302533.3714998/94‑1 (MQ=60)
CGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggcttttgtgccctcctcacctcaacttaa > SRR4302533.630826/1‑61 (MQ=60)
GTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑AC‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAG < SRR4302533.1363974/94‑1 (MQ=60)
TGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAG < SRR4302533.3261142/94‑1 (MQ=60)
TCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACCCCC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATA < SRR4302533.65013/94‑1 (MQ=60)
TCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAG < SRR4302533.5689560/94‑1 (MQ=60)
GCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGG < SRR4302533.565655/94‑1 (MQ=60)
GCTCGTCCTTCCTAAAGAGTTTTCTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAG < SRR4302533.3392899/94‑1 (MQ=60)
CTCGTCCTTCTCAAAGAGTTTTCTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGG < SRR4302533.1096747/94‑1 (MQ=60)
CTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctgcctttttgccgctcataacttcaatttaaatatagt > SRR4302533.4552652/1‑54 (MQ=60)
TCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTT < SRR4302533.1149630/94‑1 (MQ=60)
TCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTT < SRR4302533.2298019/94‑1 (MQ=60)
TCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCccggtcattgtgcgctcccagacccaaattgaacatagggtcta > SRR4302533.4566661/1‑50 (MQ=60)
CCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑AC‑‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAA < SRR4302533.3547144/94‑1 (MQ=60)
CTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAA < SRR4302533.6282169/94‑1 (MQ=60)
CTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcccgcctttttgcgcgtctacccccccaattaaaaaaagtttgtaa > SRR4302533.105544/1‑48 (MQ=60)
TTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCCGGCTATTTTGCGCTACTACCCTCAAATTAAAAATAGGTTTTAAA > SRR4302533.5481189/1‑94 (MQ=53)
CTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATA < SRR4302533.349403/94‑1 (MQ=60)
CTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggccattttgcgctccaaaacccaaatttaaaacaggtcttaaaaa > SRR4302533.2551441/1‑45 (MQ=60)
TCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCGGCCTATTGTGGGCTCATACACCCAAATTAAACATACGTTCTAAATAA > SRR4302533.6216890/1‑94 (MQ=60)
CAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggcttttctcgggtcatacactcaaattaaaagaagtgtttaaataaa > SRR4302533.4703564/1‑43 (MQ=60)
tgctaaagagttttgttttctgcattttcaagaaacccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAA < SRR4302533.2075233/54‑1 (MQ=60)
AAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGTTATGTTGCCCTCATCCACTCAAATGAAAGATTGGTTCAAATTAAAT > SRR4302533.5124966/1‑94 (MQ=38)
AAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcccggctttttgtggccccaaaccccaaaataaaaaaacattttaaaaaaaa > SRR4302533.35090/1‑42 (MQ=60)
AAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATG < SRR4302533.6114004/94‑1 (MQ=60)
AGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAG > SRR4302533.5275242/1‑94 (MQ=60)
GTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑T‑‑CCCCCCCCctttgatcttctaacctcgccgacgcaaattgaagattgtttttaagtaaataacat > SRR4302533.421627/1‑37 (MQ=60)
GTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCggcggatacagcagcaccgcaacaacaatgtaaataacaaaaaataataacccaaca > SRR4302533.4360693/1‑37 (MQ=60)
GTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcctggcttttttttgtccattccccccaattaaaaaaagtgctttaaaaaataaagt > SRR4302533.2241106/1‑37 (MQ=60)
TTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCccgggctatgggggggtaatcaactaaaattaaagaaaggttttaaaaaaaaaagggt > SRR4302533.350952/1‑36 (MQ=60)
TACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTT < SRR4302533.2428504/94‑1 (MQ=60)
TCTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTT < SRR4302533.1822147/94‑1 (MQ=60)
TTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCcccggccattttggccccctacacccaatttaaaaaaaggttttaaataaataagagtttttt > SRR4302533.4636367/1‑31 (MQ=60)
TTTCTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTG < SRR4302533.5388914/94‑1 (MQ=60)
TTTCTGCATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCCGCCTCTTGTCCGCTCATACACTCAACTTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTT > SRR4302533.5320670/1‑94 (MQ=60)
TCTGCATTTCCAGGAT‑‑T‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGAT < SRR4302533.5138301/94‑1 (MQ=60)
CTGCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATA < SRR4302533.3065341/94‑1 (MQ=60)
CTGCATTTCCAGGA‑‑‑AGCCCC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATA < SRR4302533.2617407/94‑1 (MQ=60)
TCATTTCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGT < SRR4302533.1110447/94‑1 (MQ=60)
CATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTC < SRR4302533.324968/94‑1 (MQ=60)
CATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTC < SRR4302533.3505617/94‑1 (MQ=60)
CTTTCCAGGAT‑‑C‑‑‑CT‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAT < SRR4302533.1998844/94‑1 (MQ=60)
ATTTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACCCAAATTAAAAATAAGTTCTAAATAAATAAGCGTTTTTTtttaatct > SRR4302533.4829649/1‑86 (MQ=60)
ATTTCCAGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTA < SRR4302533.4543468/94‑1 (MQ=60)
TTCCAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTAT < SRR4302533.230472/94‑1 (MQ=60)
TCCAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATT < SRR4302533.3721128/94‑1 (MQ=60)
CAGGAT‑‑T‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTC < SRR4302533.2855042/94‑1 (MQ=60)
CAGGAT‑‑ACC‑CC‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTC < SRR4302533.3083398/94‑1 (MQ=60)
CAGGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTC < SRR4302533.2855041/94‑1 (MQ=60)
AGGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAT < SRR4302533.1114547/94‑1 (MQ=60)
GGAT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGGTATTGTGGGCTCATACACTCAAATTAAAGATAGGGTCTAAATAAATGAGCGTTTTTTGTTTGTTTATTTCAT > SRR4302533.519035/1‑94 (MQ=60)
GGAT‑‑A‑‑‑CTC‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATT < SRR4302533.291729/94‑1 (MQ=60)
tccaggaaaccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATT < SRR4302533.4436714/81‑1 (MQ=60)
ccaggatcccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTT < SRR4302533.5290293/82‑1 (MQ=60)
AT‑‑A‑‑‑CTCCC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTA < SRR4302533.4091138/94‑1 (MQ=60)
gtcccccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTA < SRR4302533.1263257/87‑1 (MQ=60)
tctccC‑‑CCCCCTCCTGGCTATTGTGCTCTCATACTCTCAAAGTAAATATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGG < SRR4302533.2913209/89‑1 (MQ=60)
ctccC‑‑CCCCCCCCTGGCTATTGTGCGCCCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGT > SRR4302533.2019477/5‑94 (MQ=60)
tccC‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTTATTAGGGA > SRR4302533.5302726/4‑94 (MQ=60)
C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATA < SRR4302533.5970676/94‑1 (MQ=60)
CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT > SRR4302533.5755559/1‑94 (MQ=60)
CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT < SRR4302533.4314557/94‑1 (MQ=60)
CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATAT < SRR4302533.1582036/94‑1 (MQ=60)
CCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATA < SRR4302533.5162584/94‑1 (MQ=60)
CCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATA < SRR4302533.2792787/94‑1 (MQ=60)
CCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATA < SRR4302533.970014/94‑1 (MQ=60)
CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATAT < SRR4302533.4542547/94‑1 (MQ=60)
CCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATAT < SRR4302533.71824/94‑1 (MQ=60)
CCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATT > SRR4302533.4150642/1‑94 (MQ=60)
CTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG > SRR4302533.2690646/1‑94 (MQ=60)
|
GACAAACCTGAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCTCAAAGAGTTTACTTTTCTGCATTTCCAGGAT‑‑A‑‑‑CT‑‑C‑‑CCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTG > NC_000913/2460817‑2461002
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
