Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  >  NC_000913/4013084‑4013262
                                                                                            |                                                                                       
CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGG                                                                                        >  SRR4302533.4898556/1‑94 (MQ=60)
CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGG                                                                                        <  SRR4302533.2443290/94‑1 (MQ=60)
CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGG                                                                                        <  SRR4302533.4486514/94‑1 (MQ=60)
 TTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAT‑CG‑GC                                                                                     <  SRR4302533.358242/94‑1 (MQ=60)
  TCCGCCTTAGCATCCCACAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAAT‑CG‑GCG                                                                                    <  SRR4302533.4265468/94‑1 (MQ=60)
       ATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTA                                                                                 >  SRR4302533.1631926/1‑94 (MQ=60)
         TAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAG                                                                               <  SRR4302533.5515669/94‑1 (MQ=60)
          AGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGA                                                                              >  SRR4302533.3104466/1‑94 (MQ=60)
          AGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGA                                                                              >  SRR4302533.2830299/1‑94 (MQ=60)
          AGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGA                                                                              >  SRR4302533.2038462/1‑94 (MQ=60)
            CAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATC                                                                            >  SRR4302533.410490/1‑94 (MQ=60)
            CAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATC                                                                            >  SRR4302533.2197298/1‑94 (MQ=60)
             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           <  SRR4302533.2086567/94‑1 (MQ=60)
             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           <  SRR4302533.2436870/94‑1 (MQ=60)
             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           >  SRR4302533.4262798/1‑94 (MQ=60)
             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           >  SRR4302533.237971/1‑94 (MQ=60)
             AGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCG                                                                           >  SRR4302533.4686418/1‑94 (MQ=60)
               CCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTTTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGT                                                                         <  SRR4302533.4359232/94‑1 (MQ=60)
                CCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTT                                                                        <  SRR4302533.1893729/94‑1 (MQ=60)
                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTG                                                                       <  SRR4302533.5422705/94‑1 (MQ=60)
                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTG                                                                       >  SRR4302533.4377808/1‑94 (MQ=60)
                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTG                                                                       <  SRR4302533.5635321/94‑1 (MQ=60)
                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTG                                                                       <  SRR4302533.4711411/94‑1 (MQ=60)
                 CGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTG                                                                       >  SRR4302533.1245245/1‑94 (MQ=60)
                  GCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGC                                                                      >  SRR4302533.6016827/1‑94 (MQ=60)
                  GCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGC                                                                      >  SRR4302533.5081284/1‑94 (MQ=60)
                  GCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGC                                                                      >  SRR4302533.5573640/1‑94 (MQ=60)
                  GCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGC                                                                      <  SRR4302533.1923253/94‑1 (MQ=60)
                    AGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGA                                                                    >  SRR4302533.6289901/1‑94 (MQ=60)
                     GCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGAT                                                                   <  SRR4302533.1957818/94‑1 (MQ=60)
                      CGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATA                                                                  >  SRR4302533.3172199/1‑94 (MQ=60)
                      CGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATA                                                                  >  SRR4302533.4386426/1‑94 (MQ=60)
                       GCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATAT                                                                 <  SRR4302533.4626655/94‑1 (MQ=60)
                        CCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATC                                                                >  SRR4302533.2476225/1‑94 (MQ=60)
                         CTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCA                                                               >  SRR4302533.4743900/1‑94 (MQ=60)
                         CTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTGCGATATCA                                                               >  SRR4302533.3891669/1‑94 (MQ=60)
                          gggcgcagtGTTTCAACGCTCTCCGGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAA                                                              <  SRR4302533.1275365/85‑1 (MQ=60)
                            GCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACA                                                            <  SRR4302533.3359429/94‑1 (MQ=60)
                            GCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACA                                                            <  SRR4302533.2838542/94‑1 (MQ=60)
                             CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAG                                                           <  SRR4302533.6018523/94‑1 (MQ=60)
                             CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAG                                                           >  SRR4302533.1335780/1‑94 (MQ=60)
                             CGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAG                                                           >  SRR4302533.3893456/1‑94 (MQ=60)
                              GCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGG                                                          >  SRR4302533.3232751/1‑94 (MQ=60)
                              GCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGG                                                          <  SRR4302533.870206/94‑1 (MQ=60)
                              GCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGG                                                          >  SRR4302533.3702542/1‑94 (MQ=60)
                               CATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGT                                                         >  SRR4302533.4816977/1‑94 (MQ=60)
                               CATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGT                                                         >  SRR4302533.2805577/1‑94 (MQ=60)
                               CATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGT                                                         >  SRR4302533.1123041/1‑94 (MQ=60)
                                ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCGACAGGTT                                                        >  SRR4302533.5095624/1‑94 (MQ=60)
                                ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        >  SRR4302533.3857140/1‑94 (MQ=60)
                                ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        >  SRR4302533.3878779/1‑94 (MQ=60)
                                ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        <  SRR4302533.5993787/94‑1 (MQ=60)
                                ATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTT                                                        >  SRR4302533.4274189/1‑94 (MQ=60)
                                   GTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTT                                                     >  SRR4302533.6057074/1‑94 (MQ=60)
                                    TTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTT                                                    <  SRR4302533.4518927/94‑1 (MQ=60)
                                    TTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTT                                                    <  SRR4302533.1198565/94‑1 (MQ=60)
                                     TTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTC                                                   <  SRR4302533.2834503/94‑1 (MQ=60)
                                     TTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTC                                                   <  SRR4302533.1247653/94‑1 (MQ=60)
                                      TCAACGCTCTCCTGCGGAATGCTTTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCG                                                  <  SRR4302533.5390951/94‑1 (MQ=60)
                                      TCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCG                                                  >  SRR4302533.5122985/1‑94 (MQ=60)
                                      TCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCG                                                  <  SRR4302533.215911/94‑1 (MQ=60)
                                       CAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGG                                                 >  SRR4302533.2558923/1‑94 (MQ=60)
                                        AACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGT                                                >  SRR4302533.84043/1‑94 (MQ=60)
                                         ACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTG                                               <  SRR4302533.1405327/94‑1 (MQ=60)
                                           GGTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAA                                             >  SRR4302533.5980721/1‑94 (MQ=60)
                                             TCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATT                                           <  SRR4302533.1137921/94‑1 (MQ=60)
                                             TCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATT                                           >  SRR4302533.131907/1‑94 (MQ=60)
                                              CTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                          >  SRR4302533.614395/1‑94 (MQ=60)
                                              CTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTC                                          >  SRR4302533.4141702/1‑94 (MQ=60)
                                               TCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCA                                         <  SRR4302533.2786239/94‑1 (MQ=60)
                                                CCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAG                                        >  SRR4302533.753780/1‑94 (MQ=60)
                                                CCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAG                                        >  SRR4302533.4673890/1‑94 (MQ=60)
                                                 CTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGC                                       >  SRR4302533.2249061/1‑94 (MQ=60)
                                                  TGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCG                                      <  SRR4302533.1293878/94‑1 (MQ=60)
                                                  TGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCG                                      <  SRR4302533.4769311/94‑1 (MQ=60)
                                                   GCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGA                                     >  SRR4302533.5160628/1‑94 (MQ=60)
                                                    CGTAATGCTGTTATCCTGACCACCATATAGGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                    <  SRR4302533.2744041/94‑1 (MQ=60)
                                                    CGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                    <  SRR4302533.5905374/94‑1 (MQ=60)
                                                    CGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAC                                    >  SRR4302533.4559372/1‑94 (MQ=60)
                                                     GTAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                   <  SRR4302533.5799012/94‑1 (MQ=60)
                                                     GGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                   >  SRR4302533.2671221/1‑94 (MQ=60)
                                                     GGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                   >  SRR4302533.5072742/1‑94 (MQ=60)
                                                     GGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACT                                   <  SRR4302533.6346166/94‑1 (MQ=60)
                                                      GAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTT                                  <  SRR4302533.1788330/94‑1 (MQ=60)
                                                       AATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTG                                 >  SRR4302533.2399016/1‑94 (MQ=60)
                                                       AATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTG                                 <  SRR4302533.1348255/94‑1 (MQ=60)
                                                        ATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGT                                >  SRR4302533.3441141/1‑94 (MQ=60)
                                                        ATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGT                                <  SRR4302533.723345/94‑1 (MQ=60)
                                                        ATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGT                                >  SRR4302533.4006279/1‑94 (MQ=60)
                                                         TGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTC                               >  SRR4302533.2350033/1‑94 (MQ=60)
                                                          GCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCG                              >  SRR4302533.5511799/1‑94 (MQ=60)
                                                           CTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGC                             <  SRR4302533.5347541/94‑1 (MQ=60)
                                                            TGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCC                            >  SRR4302533.854751/1‑94 (MQ=60)
                                                            TGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCC                            >  SRR4302533.4406899/1‑94 (MQ=60)
                                                             GTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCC                           <  SRR4302533.1024634/94‑1 (MQ=60)
                                                             GTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCC                           >  SRR4302533.4780020/1‑94 (MQ=60)
                                                              TTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCG                          <  SRR4302533.1749725/94‑1 (MQ=60)
                                                                ATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTC                        <  SRR4302533.1991388/94‑1 (MQ=60)
                                                                ATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCCGTGAATTCAGCGACTTGTCGCCCGTC                        >  SRR4302533.1887045/1‑94 (MQ=60)
                                                                  CCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAG                      <  SRR4302533.5029371/94‑1 (MQ=60)
                                                                   CTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGT                     <  SRR4302533.6320376/94‑1 (MQ=60)
                                                                    TGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTT                    >  SRR4302533.4766624/1‑94 (MQ=60)
                                                                    TGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTT                    <  SRR4302533.4649107/94‑1 (MQ=60)
                                                                     GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                   <  SRR4302533.4834850/94‑1 (MQ=60)
                                                                     GACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTT                   >  SRR4302533.2793569/1‑94 (MQ=60)
                                                                        CACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCC                <  SRR4302533.262739/94‑1 (MQ=60)
                                                                        CACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCC                >  SRR4302533.1560892/1‑94 (MQ=60)
                                                                         ACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCG               >  SRR4302533.1971671/1‑94 (MQ=60)
                                                                         ACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCG               <  SRR4302533.2979092/94‑1 (MQ=60)
                                                                          CCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGT              >  SRR4302533.5487417/1‑94 (MQ=60)
                                                                          CCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGT              <  SRR4302533.1606845/94‑1 (MQ=60)
                                                                            ATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC            >  SRR4302533.4182807/1‑94 (MQ=60)
                                                                            ATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC            >  SRR4302533.5709546/1‑94 (MQ=60)
                                                                            ATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTAC            >  SRR4302533.1737122/1‑94 (MQ=60)
                                                                             TATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACC           >  SRR4302533.1076162/1‑94 (MQ=60)
                                                                              ATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCA          >  SRR4302533.6156118/1‑94 (MQ=60)
                                                                              ATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCA          <  SRR4302533.1089807/94‑1 (MQ=60)
                                                                               TAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCAC         <  SRR4302533.4048253/94‑1 (MQ=60)
                                                                               TAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCAC         <  SRR4302533.1974492/94‑1 (MQ=60)
                                                                               TAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGATGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCAC         <  SRR4302533.5951302/94‑1 (MQ=60)
                                                                                  GCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCC      <  SRR4302533.600539/94‑1 (MQ=60)
                                                                                  GCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCC      <  SRR4302533.4749576/94‑1 (MQ=60)
                                                                                  GCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCC      <  SRR4302533.2624716/94‑1 (MQ=60)
                                                                                   CCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCA     >  SRR4302533.5434142/1‑94 (MQ=60)
                                                                                    CGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGATGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGACAC    >  SRR4302533.720111/1‑94 (MQ=60)
                                                                                     GAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACT   <  SRR4302533.4351227/94‑1 (MQ=60)
                                                                                     GAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACT   >  SRR4302533.2245955/1‑94 (MQ=60)
                                                                                     GAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACT   >  SRR4302533.1183946/1‑94 (MQ=60)
                                                                                      AGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  <  SRR4302533.2613097/94‑1 (MQ=60)
                                                                                      AGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  <  SRR4302533.764767/94‑1 (MQ=60)
                                                                                            |                                                                                       
CTTTCGCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCG‑GCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTG  >  NC_000913/4013084‑4013262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑