Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGGCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA  >  NC_000913/4448448‑4448633
                                                                                                 |                                                                                            
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CG                                                                                              <  SRR4302533.2086847/94‑1 (MQ=60)
GATACAGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CG                                                                                              <  SRR4302533.1191834/94‑1 (MQ=60)
   ACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑C‑GCGC                                                                                          <  SRR4302533.2271279/94‑1 (MQ=60)
     CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTGGTAGGCGGGATAAGGCG‑‑CT‑‑CGGgccg                                                                                         >  SRR4302533.5254095/1‑90 (MQ=60)
       CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgca                                                                                       >  SRR4302533.5768882/1‑87 (MQ=60)
         AAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgcatc                                                                                     <  SRR4302533.1702821/94‑10 (MQ=60)
          AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgcatcc                                                                                    <  SRR4302533.3981719/94‑11 (MQ=60)
          AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgcatcc                                                                                    <  SRR4302533.4218813/94‑11 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCG                                                                                     >  SRR4302533.761317/1‑94 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCG                                                                                     <  SRR4302533.3635227/94‑1 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCG                                                                                     <  SRR4302533.3024164/94‑1 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCG                                                                                     >  SRR4302533.2279687/1‑94 (MQ=60)
           AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCG                                                                                     >  SRR4302533.833086/1‑94 (MQ=60)
             AAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGC                                                                                   <  SRR4302533.2512191/94‑1 (MQ=60)
              AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCG                                                                                  >  SRR4302533.839999/1‑94 (MQ=60)
               GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGA                                                                                 >  SRR4302533.3930882/1‑94 (MQ=60)
               GAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGA                                                                                 <  SRR4302533.3843936/94‑1 (MQ=60)
                AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGAT                                                                                <  SRR4302533.1259459/94‑1 (MQ=60)
                AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGATTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGAT                                                                                <  SRR4302533.3667834/94‑1 (MQ=60)
                 ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATG                                                                               <  SRR4302533.4946334/94‑1 (MQ=60)
                 ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATG                                                                               >  SRR4302533.5729335/1‑94 (MQ=60)
                   TAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGT                                                                             <  SRR4302533.3907008/94‑1 (MQ=60)
                   TAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGT                                                                             >  SRR4302533.2938224/1‑94 (MQ=60)
                    AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTG                                                                            >  SRR4302533.6007352/1‑94 (MQ=60)
                    AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTG                                                                            >  SRR4302533.5686915/1‑94 (MQ=60)
                    AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATCGTG                                                                            >  SRR4302533.5782562/1‑94 (MQ=60)
                     GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGC                                                                           >  SRR4302533.5062426/1‑94 (MQ=60)
                        AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACT                                                                        <  SRR4302533.5953680/94‑1 (MQ=60)
                        AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACT                                                                        >  SRR4302533.594415/1‑94 (MQ=60)
                        AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACT                                                                        >  SRR4302533.2524755/1‑94 (MQ=60)
                         AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTG                                                                       <  SRR4302533.1720257/94‑1 (MQ=60)
                         AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTG                                                                       >  SRR4302533.3695029/1‑94 (MQ=60)
                          GAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGA                                                                      <  SRR4302533.2378362/94‑1 (MQ=60)
                          GAAGAAAAATATGGGGTATTGAGGGGTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGCGCACTGA                                                                      >  SRR4302533.3652759/1‑94 (MQ=60)
                          GAAGAAAAATATGAGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGA                                                                      >  SRR4302533.3425533/1‑94 (MQ=60)
                           AAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAA                                                                     <  SRR4302533.6223269/94‑1 (MQ=60)
                            AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAG                                                                    <  SRR4302533.5905695/94‑1 (MQ=60)
                            AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAG                                                                    <  SRR4302533.3113914/94‑1 (MQ=60)
                              AAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCC                                                                  <  SRR4302533.2623946/94‑1 (MQ=60)
                               AAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCT                                                                 <  SRR4302533.4036366/94‑1 (MQ=60)
                                AAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTG                                                                >  SRR4302533.5048318/1‑94 (MQ=60)
                                 AATATGGGGTATGGGGGGTTGCTATGCCGGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGA                                                               <  SRR4302533.1882795/94‑1 (MQ=56)
                                  ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAT                                                              >  SRR4302533.194772/1‑94 (MQ=60)
                                   TATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATG                                                             >  SRR4302533.2801211/1‑94 (MQ=60)
                                      GGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGA                                                          >  SRR4302533.2841759/1‑94 (MQ=60)
                                        GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACG                                                        <  SRR4302533.3628497/94‑1 (MQ=60)
                                        GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACG                                                        >  SRR4302533.4622254/1‑94 (MQ=60)
                                        GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACG                                                        >  SRR4302533.3507885/1‑94 (MQ=60)
                                          TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT                                                      >  SRR4302533.1874200/1‑94 (MQ=60)
                                          TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT                                                      >  SRR4302533.5577172/1‑94 (MQ=60)
                                           ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT                                                     >  SRR4302533.2652423/1‑94 (MQ=60)
                                            TTGAGGTTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAGGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTA                                                    <  SRR4302533.4708348/94‑1 (MQ=60)
                                             TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC                                                   >  SRR4302533.2464046/1‑94 (MQ=60)
                                              GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC                                                  <  SRR4302533.3674636/94‑1 (MQ=60)
                                               AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG                                                 >  SRR4302533.5145875/1‑94 (MQ=60)
                                               AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCCGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGCAGCCTGATGCGACGCTTACCG                                                 >  SRR4302533.2702892/1‑94 (MQ=60)
                                                 GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG                                               <  SRR4302533.5316772/94‑1 (MQ=60)
                                                 GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAAGCTTACCGCG                                               >  SRR4302533.1810128/1‑94 (MQ=60)
                                                  GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT                                              >  SRR4302533.283753/1‑94 (MQ=60)
                                                  GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT                                              >  SRR4302533.44546/1‑94 (MQ=60)
                                                  GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT                                              <  SRR4302533.2749649/94‑1 (MQ=60)
                                                   TTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTC                                             >  SRR4302533.4728518/1‑94 (MQ=60)
                                                    TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT                                            <  SRR4302533.6118177/94‑1 (MQ=60)
                                                      CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA                                          <  SRR4302533.2612819/94‑1 (MQ=60)
                                                       TATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAT                                         <  SRR4302533.1168947/94‑1 (MQ=60)
                                                       TATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGGCTTAT                                         >  SRR4302533.1527034/1‑94 (MQ=60)
                                                        ATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC                                        >  SRR4302533.3327771/1‑94 (MQ=60)
                                                        ATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC                                        <  SRR4302533.4832944/94‑1 (MQ=60)
                                                        ATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC                                        >  SRR4302533.2090814/1‑94 (MQ=60)
                                                         TGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA                                       >  SRR4302533.1425013/1‑94 (MQ=60)
                                                         TGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA                                       >  SRR4302533.5099430/1‑94 (MQ=60)
                                                          GCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT                                      >  SRR4302533.1244088/1‑94 (MQ=60)
                                                          CCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT                                      <  SRR4302533.3375844/94‑1 (MQ=60)
                                                           CCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG                                     >  SRR4302533.5705862/1‑94 (MQ=60)
                                                            CTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC                                    >  SRR4302533.1063067/1‑94 (MQ=60)
                                                            CTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC                                    >  SRR4302533.4430753/1‑94 (MQ=60)
                                                            CTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC                                    <  SRR4302533.5686425/94‑1 (MQ=60)
                                                            CTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC                                    >  SRR4302533.2311633/1‑94 (MQ=60)
                                                            CTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC                                    >  SRR4302533.2603217/1‑94 (MQ=60)
                                                             TGATGCGTATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                   <  SRR4302533.5731924/94‑1 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                   <  SRR4302533.2847862/94‑1 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                   >  SRR4302533.5735538/1‑94 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                   >  SRR4302533.653892/1‑94 (MQ=60)
                                                             TGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC                                   >  SRR4302533.196686/1‑94 (MQ=60)
                                                              GATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT                                  >  SRR4302533.5688226/1‑94 (MQ=60)
                                                              GATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT                                  <  SRR4302533.181348/94‑1 (MQ=60)
                                                              GATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT                                  <  SRR4302533.1649900/94‑1 (MQ=60)
                                                               ATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA                                 >  SRR4302533.566628/1‑94 (MQ=60)
                                                               ATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA                                 >  SRR4302533.5568393/1‑94 (MQ=60)
                                                                 GCGGATTCGTAGGCGGGATAAGGCGCCCG‑‑CGCCGCATCCGGAGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT                               <  SRR4302533.4525154/94‑1 (MQ=57)
                                                                 GCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT                               >  SRR4302533.1776979/1‑94 (MQ=60)
                                                                 GCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT                               <  SRR4302533.652486/94‑1 (MQ=60)
                                                                 GCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT                               >  SRR4302533.3551255/1‑94 (MQ=60)
                                                                  CCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG                              >  SRR4302533.1919940/1‑94 (MQ=60)
                                                                  CCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG                              <  SRR4302533.4603339/94‑1 (MQ=60)
                                                                  CCGATTCGTAGCCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG                              <  SRR4302533.3527642/94‑1 (MQ=60)
                                                                    GATTCGTGGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG                            <  SRR4302533.1291647/94‑1 (MQ=60)
                                                                     ATTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA                           >  SRR4302533.2155830/1‑94 (MQ=60)
                                                                      TTCGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG                          >  SRR4302533.458830/1‑94 (MQ=60)
                                                                        CGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCC                        >  SRR4302533.3432024/1‑94 (MQ=60)
                                                                        CGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA                        >  SRR4302533.1535862/1‑94 (MQ=60)
                                                                        CGTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA                        >  SRR4302533.3798075/1‑94 (MQ=60)
                                                                         GTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC                       <  SRR4302533.2919274/94‑1 (MQ=60)
                                                                         GTAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC                       <  SRR4302533.5704094/94‑1 (MQ=60)
                                                                          TAGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACG                      <  SRR4302533.5795026/94‑1 (MQ=60)
                                                                           AGGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC                     >  SRR4302533.3333537/1‑94 (MQ=60)
                                                                            GGCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCT                    <  SRR4302533.2325831/94‑1 (MQ=60)
                                                                             GCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTT                   >  SRR4302533.1233657/1‑94 (MQ=60)
                                                                             GCCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTT                   <  SRR4302533.5994965/94‑1 (MQ=60)
                                                                              CCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTT                  >  SRR4302533.2772012/1‑94 (MQ=60)
                                                                              CCGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTT                  >  SRR4302533.75854/1‑94 (MQ=60)
                                                                               CGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA                 >  SRR4302533.6308037/1‑94 (MQ=60)
                                                                               CGGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA                 >  SRR4302533.3346207/1‑94 (MQ=60)
                                                                                GGATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC                <  SRR4302533.641572/94‑1 (MQ=60)
                                                                                 GATAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACA               >  SRR4302533.677093/1‑94 (MQ=60)
                                                                                   TAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACC             <  SRR4302533.3496785/94‑1 (MQ=60)
                                                                                   TAAGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACC             >  SRR4302533.5136618/1‑94 (MQ=60)
                                                                                     AGGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG           <  SRR4302533.4603048/94‑1 (MQ=60)
                                                                                      GGCG‑‑CTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG          <  SRR4302533.5493645/94‑1 (MQ=60)
                                                                                                CGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA  >  SRR4302533.3777789/1‑94 (MQ=60)
                                                                                                 |                                                                                            
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGGCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA  >  NC_000913/4448448‑4448633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑