Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 907,912 T→C P202P (CCA→CCG)  ybjU ← putative arylsulfatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913907,9120TC98.7% 772.8 / ‑2.8 232P202P (CCA→CCG) ybjUputative arylsulfatase
Reads supporting (aligned to +/- strand):  ref base T (2/1);  new base C (111/118);  total (113/119)
Fisher's exact test for biased strand distribution p-value = 6.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01

Only 100 of 240 total aligned reads displayed.

AATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACTGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGCA  >  NC_000913/907819‑908002
                                                                                             |                                                                                          
  tGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCgg                                                                                          >  1:4307068/1‑94 (MQ=255)
  tGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCgg                                                                                          >  2:8539050/1‑94 (MQ=255)
   gCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGc                                                                                         <  2:7775709/94‑1 (MQ=255)
     cGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGt                                                                                       >  2:7122855/1‑94 (MQ=255)
       gACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTcc                                                                                     <  2:8099903/94‑1 (MQ=255)
        aCTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTccc                                                                                    >  1:10258256/1‑94 (MQ=255)
         cTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCa                                                                                   >  1:3956958/1‑94 (MQ=255)
          tGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCaa                                                                                  >  2:4087828/1‑94 (MQ=255)
          tGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCaa                                                                                  >  2:3421373/1‑94 (MQ=255)
              gcATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAATCGTTCGGCGTCCCATGAcc                                                                              >  1:9410665/1‑94 (MQ=255)
              gcATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGAcc                                                                              <  2:1780730/94‑1 (MQ=255)
               cATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCt                                                                             >  2:7358027/1‑94 (MQ=255)
                aTCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTCATGAACCGACCGGCGTCCCAAGACCtt                                                                            <  2:2071635/94‑1 (MQ=255)
                 tCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCttt                                                                           >  1:1761290/1‑94 (MQ=255)
                 tCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCttt                                                                           <  2:1252901/94‑1 (MQ=255)
                  cccGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTc                                                                          <  2:7485414/94‑1 (MQ=255)
                  cccGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTc                                                                          >  1:4622535/1‑94 (MQ=255)
                   ccGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCg                                                                         <  1:9672025/94‑1 (MQ=255)
                     gCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGAc                                                                       >  2:939624/1‑94 (MQ=255)
                      ccACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACa                                                                      >  2:9094342/1‑94 (MQ=255)
                      ccACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACa                                                                      <  1:10356355/94‑1 (MQ=255)
                       cACCTGTCATTTTCCGCCAGCGAATGGCTCGTTTAATGTAATCCCGATTACCGACGAGTAATGAACCGACCGGCGGCCCAAGACCTTTCGACAg                                                                     <  1:9068451/94‑1 (MQ=255)
                       cACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGCCAg                                                                     >  1:466329/1‑94 (MQ=255)
                       cACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAg                                                                     >  1:10030285/1‑94 (MQ=255)
                       cACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCAACAg                                                                     >  1:2279053/1‑94 (MQ=255)
                        aCCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAgg                                                                    <  1:260692/94‑1 (MQ=255)
                          cTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCa                                                                  <  1:6401134/94‑1 (MQ=255)
                          cTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCa                                                                  <  2:2529136/94‑1 (MQ=255)
                           tGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATGACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCaa                                                                 <  2:9260769/94‑1 (MQ=255)
                           tGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCaa                                                                 >  1:6825450/1‑94 (MQ=255)
                           tGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCaa                                                                 >  1:7609070/1‑94 (MQ=255)
                           tGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCaa                                                                 <  1:9929063/94‑1 (MQ=255)
                           ggTCATTTTCCGCCAGCGAATGGCTCGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCaa                                                                 <  2:7233619/93‑1 (MQ=255)
                             tCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAAt                                                               <  1:1702845/94‑1 (MQ=255)
                              cATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATg                                                              >  2:4662391/1‑94 (MQ=255)
                                    ccGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAAc                                                        >  1:1603200/1‑94 (MQ=255)
                                    ccGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAAc                                                        <  1:8836051/94‑1 (MQ=255)
                                     cGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACg                                                       >  1:9951160/1‑94 (MQ=255)
                                     cGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACg                                                       <  1:9500009/94‑1 (MQ=255)
                                      gCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGa                                                      <  1:9210956/94‑1 (MQ=255)
                                      gCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGa                                                      <  2:5140242/94‑1 (MQ=255)
                                       ccAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGaa                                                     >  1:5533524/1‑94 (MQ=255)
                                        cAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAAt                                                    >  1:6267680/1‑94 (MQ=255)
                                         cgCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATc                                                   <  1:2467508/93‑1 (MQ=255)
                                         aGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATc                                                   >  1:7209826/1‑94 (MQ=255)
                                         aGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATc                                                   <  1:5401947/94‑1 (MQ=255)
                                          gCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATca                                                  <  1:5933726/94‑1 (MQ=255)
                                           cGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGCCTGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATcac                                                 >  2:5237760/1‑94 (MQ=255)
                                           cGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATcac                                                 >  2:2970919/1‑94 (MQ=255)
                                            gAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATcaca                                                >  1:10462073/1‑94 (MQ=255)
                                            gAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATcaca                                                >  2:5906744/1‑94 (MQ=255)
                                             aaTGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACaa                                               <  1:8306109/94‑1 (MQ=255)
                                              aTGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAat                                              >  1:4466309/1‑94 (MQ=255)
                                              aTGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAat                                              >  2:8770277/1‑94 (MQ=255)
                                               tGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAata                                             <  2:5033931/94‑1 (MQ=255)
                                               tGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAata                                             <  1:3820056/94‑1 (MQ=255)
                                                ggCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAatat                                            <  1:3493608/94‑1 (MQ=255)
                                                  cACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTg                                          >  1:7911910/1‑94 (MQ=255)
                                                   aCGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGc                                         >  2:9728053/1‑94 (MQ=255)
                                                    cGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGTCCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCg                                        <  1:391868/94‑1 (MQ=255)
                                                     gTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGt                                       <  1:1075613/94‑1 (MQ=255)
                                                      tttAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTg                                      >  2:815346/1‑94 (MQ=255)
                                                      tttAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTg                                      <  2:6482284/94‑1 (MQ=255)
                                                       ttAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGa                                     >  2:3643911/1‑94 (MQ=255)
                                                       ttAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGa                                     >  1:506118/1‑94 (MQ=255)
                                                       ttAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATAACAATATTGCGTGa                                     >  2:6198240/1‑94 (MQ=255)
                                                        tAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGAt                                    <  1:2942247/94‑1 (MQ=255)
                                                           tGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGAtctc                                 <  1:837763/94‑1 (MQ=255)
                                                            gTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATctct                                >  2:1399092/1‑94 (MQ=255)
                                                            gTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATctct                                <  2:5668235/94‑1 (MQ=255)
                                                              taTCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCttt                              <  2:6797029/93‑1 (MQ=255)
                                                              aaTCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCttt                              <  1:5677639/94‑1 (MQ=255)
                                                                tCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCa                            <  2:1103966/94‑1 (MQ=255)
                                                                tCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCa                            >  1:7036920/1‑94 (MQ=255)
                                                                  aCGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGt                          <  1:1326125/94‑1 (MQ=255)
                                                                   cGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGtt                         <  1:4522850/94‑1 (MQ=255)
                                                                   cGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGtt                         <  1:9809261/94‑1 (MQ=255)
                                                                    gATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTc                        >  2:10177455/1‑94 (MQ=255)
                                                                     aTTACCGACGAGTAATGAACCGACTGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCg                       <  1:5637361/94‑1 (MQ=255)
                                                                     aTTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCg                       >  1:2199713/1‑94 (MQ=255)
                                                                       tACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCa                     >  2:8427276/1‑94 (MQ=255)
                                                                       tACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCa                     <  1:7577161/94‑1 (MQ=255)
                                                                        aCCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAg                    >  2:7965614/1‑94 (MQ=255)
                                                                         ccGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGc                   <  1:6448356/94‑1 (MQ=255)
                                                                         ccGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGc                   <  2:759533/94‑1 (MQ=255)
                                                                          cgacgaGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGcc                  >  1:3299449/1‑94 (MQ=255)
                                                                          cgacgaGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGcc                  >  2:3897552/1‑94 (MQ=255)
                                                                           gacgaGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCg                 >  1:2971862/1‑94 (MQ=255)
                                                                            acgaGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGt                <  1:1936311/94‑1 (MQ=255)
                                                                            acgaGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGt                >  1:1459563/1‑94 (MQ=255)
                                                                              gaGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTaa              <  2:10605501/94‑1 (MQ=255)
                                                                              gaGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTaa              <  1:7547841/94‑1 (MQ=255)
                                                                               aatAATGAACCGGCCGGCGTCCCAAGACCGTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAg             <  2:3763126/92‑1 (MQ=255)
                                                                               aGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAg             <  2:4203000/94‑1 (MQ=255)
                                                                               aGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAg             <  1:5954266/94‑1 (MQ=255)
                                                                               aGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAg             <  1:777008/94‑1 (MQ=255)
                                                                                gTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGc            <  2:2446193/94‑1 (MQ=255)
                                                                                gTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGc            >  2:4346694/1‑94 (MQ=255)
                                                                                     gAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATTACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGccacca       >  1:3163730/1‑94 (MQ=255)
                                                                                       accgaccgGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACg     <  2:5490884/94‑1 (MQ=255)
                                                                                             |                                                                                          
AATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACTGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGCA  >  NC_000913/907819‑908002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACTGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGCATTA  >  NC_000913/907819‑908005
                                                                                             |                                                                                             
aatgcctgacgtgcccacCCCGCCACCGGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGGAATGAACCGACT                                                                                               <  SRR4302545.7186543/76‑1 (MQ=60)
AATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACC                                                                                               <  SRR4302545.7640159/94‑1 (MQ=60)
AATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACC                                                                                               <  SRR4302545.4948507/94‑1 (MQ=60)
AATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACC                                                                                               <  SRR4302545.3104736/94‑1 (MQ=60)
 ATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCG                                                                                              <  SRR4302545.6981920/94‑1 (MQ=60)
 ATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCG                                                                                              >  SRR4302545.6648884/1‑94 (MQ=60)
  TGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGG                                                                                             >  SRR4302545.4415525/1‑94 (MQ=60)
      GGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTC                                                                                         >  SRR4302545.3232070/1‑94 (MQ=60)
        ACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCC                                                                                       <  SRR4302545.4600498/94‑1 (MQ=60)
        ACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCC                                                                                       >  SRR4302545.10560999/1‑94 (MQ=60)
         CTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCA                                                                                      <  SRR4302545.1350575/94‑1 (MQ=60)
         CTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCA                                                                                      >  SRR4302545.4055862/1‑94 (MQ=60)
           GGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAG                                                                                    <  SRR4302545.2539833/94‑1 (MQ=60)
             CGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGAC                                                                                  <  SRR4302545.1015878/94‑1 (MQ=60)
             CGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGAC                                                                                  <  SRR4302545.10162632/94‑1 (MQ=60)
               CATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACTGGCGTCCCAAGACCT                                                                                >  SRR4302545.4491515/1‑94 (MQ=60)
               CATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCT                                                                                <  SRR4302545.8793900/94‑1 (MQ=60)
                 TCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATTCACCGACCGGCGTCCCAAGACCTTT                                                                              >  SRR4302545.1803463/1‑94 (MQ=60)
                 TCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTT                                                                              >  SRR4302545.1803462/1‑94 (MQ=60)
                  CCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTC                                                                             >  SRR4302545.4740747/1‑94 (MQ=60)
                  CCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTC                                                                             <  SRR4302545.7823619/94‑1 (MQ=60)
                   CCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCG                                                                            <  SRR4302545.9958901/94‑1 (MQ=60)
                     GCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGAC                                                                          >  SRR4302545.4747410/1‑94 (MQ=60)
                      CCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACA                                                                         <  SRR4302545.10661625/94‑1 (MQ=60)
                      CCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACA                                                                         <  SRR4302545.6754988/94‑1 (MQ=60)
                       CACCTGTCATTTTCCGCCAGCGAATGGCTCGTTTAATGTAATCCCGATTACCGACGAGTAATGAACCGACCGGCGGCCCAAGACCTTTCGACAG                                                                        <  SRR4302545.9333438/94‑1 (MQ=60)
                       CACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGCCAG                                                                        >  SRR4302545.476732/1‑94 (MQ=60)
                       CACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAG                                                                        <  SRR4302545.5093280/94‑1 (MQ=60)
                       CACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAG                                                                        >  SRR4302545.10327462/1‑94 (MQ=60)
                       CACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAG                                                                        >  SRR4302545.2986074/1‑94 (MQ=60)
                       CACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCAACAG                                                                        >  SRR4302545.2334487/1‑94 (MQ=60)
                        ACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGG                                                                       >  SRR4302545.4027737/1‑94 (MQ=60)
                        ACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGG                                                                       <  SRR4302545.266069/94‑1 (MQ=60)
                         CCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGC                                                                      <  SRR4302545.3242822/94‑1 (MQ=60)
                          CTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCA                                                                     <  SRR4302545.6576164/94‑1 (MQ=60)
                           TGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAA                                                                    <  SRR4302545.10223930/94‑1 (MQ=60)
                           TGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAA                                                                    >  SRR4302545.7824320/1‑94 (MQ=60)
                           TGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAA                                                                    >  SRR4302545.7013009/1‑94 (MQ=60)
                            GTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGAGCTTTCGACACGCAAA                                                                   >  SRR4302545.4376879/1‑94 (MQ=60)
                            GTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAA                                                                   >  SRR4302545.783660/1‑94 (MQ=60)
                             TCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAAT                                                                  <  SRR4302545.1743347/94‑1 (MQ=60)
                             TCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAAT                                                                  <  SRR4302545.1707115/94‑1 (MQ=60)
                              cgttggCCGCCAGCGAAAGGCACGTATAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTCCGACAGGCAAATG                                                                 <  SRR4302545.8358844/88‑1 (MQ=60)
                                 TTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTG                                                              <  SRR4302545.1740560/94‑1 (MQ=60)
                                  TTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACGGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGA                                                             >  SRR4302545.9851773/1‑94 (MQ=60)
                                    CCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAAC                                                           <  SRR4302545.5570282/94‑1 (MQ=60)
                                    CCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAAC                                                           <  SRR4302545.5570286/94‑1 (MQ=60)
                                    CCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAAC                                                           >  SRR4302545.1641209/1‑94 (MQ=60)
                                    CCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAAC                                                           <  SRR4302545.9092619/94‑1 (MQ=60)
                                     CGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACG                                                          <  SRR4302545.9779657/94‑1 (MQ=60)
                                     CGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACG                                                          >  SRR4302545.10246488/1‑94 (MQ=60)
                                     CGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACG                                                          <  SRR4302545.106697/94‑1 (MQ=60)
                                      GCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGA                                                         <  SRR4302545.9480968/94‑1 (MQ=60)
                                       CCAGCGAATGGCACGTTTAATGTAATTACCATTACCGACGAGTAATGAACTCACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAA                                                        >  SRR4302545.10396831/1‑94 (MQ=60)
                                       CCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAA                                                        <  SRR4302545.5062286/94‑1 (MQ=60)
                                       CCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAA                                                        >  SRR4302545.913510/1‑94 (MQ=60)
                                       CCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAA                                                        >  SRR4302545.5679624/1‑94 (MQ=60)
                                        CAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAAT                                                       >  SRR4302545.6438561/1‑94 (MQ=60)
                                        CAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAAT                                                       >  SRR4302545.9334300/1‑94 (MQ=60)
                                         CGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATC                                                      <  SRR4302545.2527236/94‑1 (MQ=60)
                                         AGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATC                                                      <  SRR4302545.5542816/94‑1 (MQ=60)
                                         AGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATC                                                      >  SRR4302545.7410826/1‑94 (MQ=60)
                                         AGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATC                                                      >  SRR4302545.9742434/1‑94 (MQ=60)
                                         AGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCCGCGTACCAAGACCTTTCGACAGGCACATGGTGAACGAATC                                                      >  SRR4302545.7410825/1‑94 (MQ=60)
                                          GCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCA                                                     <  SRR4302545.6093827/94‑1 (MQ=60)
                                           CGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCAC                                                    >  SRR4302545.5337073/1‑94 (MQ=60)
                                            GAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACA                                                   <  SRR4302545.627299/94‑1 (MQ=60)
                                            GAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACA                                                   >  SRR4302545.10770523/1‑94 (MQ=60)
                                             AATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAA                                                  <  SRR4302545.8546755/94‑1 (MQ=60)
                                             AATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAA                                                  <  SRR4302545.3606941/94‑1 (MQ=60)
                                              ATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAAT                                                 >  SRR4302545.4580259/1‑94 (MQ=60)
                                               TGGCACTTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATA                                                <  SRR4302545.9817767/94‑1 (MQ=60)
                                               TGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATA                                                >  SRR4302545.6442468/1‑94 (MQ=60)
                                               TGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATA                                                >  SRR4302545.942126/1‑94 (MQ=60)
                                               TGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATA                                                >  SRR4302545.4697933/1‑94 (MQ=60)
                                               TGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATA                                                <  SRR4302545.3915118/94‑1 (MQ=60)
                                                GGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATAT                                               <  SRR4302545.3579262/94‑1 (MQ=60)
                                                 GCACGTTTAATTTAATCACTATTACCGACTAGTAATGATCCGTCCGGCGCCCCAAGCCCTGTCGACAGGCAAATGGTGAACGAATCACAATATT                                              <  SRR4302545.1529219/94‑1 (MQ=53)
                                                  CACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTG                                             >  SRR4302545.22586/1‑94 (MQ=60)
                                                  CACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTG                                             >  SRR4302545.8136516/1‑94 (MQ=60)
                                                    CGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGTCCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCG                                           <  SRR4302545.400595/94‑1 (MQ=60)
                                                     GTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGT                                          <  SRR4302545.8552846/94‑1 (MQ=60)
                                                     GTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGT                                          <  SRR4302545.1098955/94‑1 (MQ=60)
                                                     GTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGG                                          >  SRR4302545.7776601/1‑94 (MQ=60)
                                                      TTTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTG                                         >  SRR4302545.3023352/1‑94 (MQ=60)
                                                       TTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGA                                        >  SRR4302545.2516129/1‑94 (MQ=60)
                                                       TTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGA                                        >  SRR4302545.2042245/1‑94 (MQ=60)
                                                       TTAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGA                                        >  SRR4302545.517480/1‑94 (MQ=60)
                                                        TAATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGAT                                       <  SRR4302545.3013828/94‑1 (MQ=60)
                                                         AATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATC                                      >  SRR4302545.10844499/1‑94 (MQ=60)
                                                          ATGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCT                                     <  SRR4302545.3442540/94‑1 (MQ=60)
                                                           TGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTC                                    <  SRR4302545.856567/94‑1 (MQ=60)
                                                           AGTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTCCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTC                                    <  SRR4302545.3657588/94‑1 (MQ=60)
                                                            GTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCT                                   >  SRR4302545.1242906/1‑94 (MQ=60)
                                                            GTAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCT                                   >  SRR4302545.9448289/1‑94 (MQ=60)
                                                             TAATCACTATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATAATGCGTGATCTCTT                                  <  SRR4302545.10628958/94‑1 (MQ=60)
                                                             TAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTT                                  <  SRR4302545.8111492/94‑1 (MQ=60)
                                                             TAATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTT                                  <  SRR4302545.4617862/94‑1 (MQ=60)
                                                              AATCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTT                                 <  SRR4302545.5829340/94‑1 (MQ=60)
                                                                TCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCA                               >  SRR4302545.7231268/1‑94 (MQ=60)
                                                                TCACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCA                               <  SRR4302545.8104932/94‑1 (MQ=60)
                                                                  ACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGT                             <  SRR4302545.1355604/94‑1 (MQ=60)
                                                                  ACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGT                             <  SRR4302545.2407597/94‑1 (MQ=60)
                                                                  ACGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGT                             >  SRR4302545.10223313/1‑94 (MQ=60)
                                                                   CGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTT                            <  SRR4302545.1604724/94‑1 (MQ=60)
                                                                   CGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTT                            <  SRR4302545.4638699/94‑1 (MQ=60)
                                                                   CGATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTT                            <  SRR4302545.10100731/94‑1 (MQ=60)
                                                                     ATTACCGACGAGTAATGAACCGACTGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCG                          <  SRR4302545.5787368/94‑1 (MQ=60)
                                                                     ATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCG                          >  SRR4302545.995908/1‑94 (MQ=60)
                                                                     ATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCG                          >  SRR4302545.2253471/1‑94 (MQ=60)
                                                                     ATTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCG                          <  SRR4302545.7697379/94‑1 (MQ=60)
                                                                      TTACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGC                         <  SRR4302545.4095211/94‑1 (MQ=60)
                                                                       TACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCA                        <  SRR4302545.7791348/94‑1 (MQ=60)
                                                                        ACCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAG                       >  SRR4302545.3918505/1‑94 (MQ=60)
                                                                         CCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGC                      <  SRR4302545.6624657/94‑1 (MQ=60)
                                                                         CCGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGC                      >  SRR4302545.6094888/1‑94 (MQ=60)
                                                                          CGACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCC                     >  SRR4302545.3380185/1‑94 (MQ=60)
                                                                           GACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCG                    >  SRR4302545.6435095/1‑94 (MQ=60)
                                                                           GACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCG                    <  SRR4302545.567663/94‑1 (MQ=60)
                                                                           GACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCG                    >  SRR4302545.3044267/1‑94 (MQ=60)
                                                                           GACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATAGCGTGATCTCTTTCAGTTCGCACCCG                    >  SRR4302545.7800794/1‑94 (MQ=60)
                                                                            ACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGT                   <  SRR4302545.1984303/94‑1 (MQ=60)
                                                                            ACGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGT                   >  SRR4302545.1492955/1‑94 (MQ=60)
                                                                             CGAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTA                  >  SRR4302545.7355817/1‑94 (MQ=60)
                                                                              GAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAA                 <  SRR4302545.7761248/94‑1 (MQ=60)
                                                                              GAGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAA                 <  SRR4302545.8900881/94‑1 (MQ=60)
                                                                               AGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAG                <  SRR4302545.794485/94‑1 (MQ=60)
                                                                               AGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAG                >  SRR4302545.2886680/1‑94 (MQ=60)
                                                                               AGTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAG                <  SRR4302545.6114906/94‑1 (MQ=60)
                                                                                GTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGC               <  SRR4302545.8462171/94‑1 (MQ=60)
                                                                                GTAATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGC               <  SRR4302545.577568/94‑1 (MQ=60)
                                                                                   ATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCAC            <  SRR4302545.5924125/94‑1 (MQ=60)
                                                                                   ATGAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCAC            <  SRR4302545.5924123/94‑1 (MQ=60)
                                                                                     GAACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATTACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCA          >  SRR4302545.3241462/1‑94 (MQ=60)
                                                                                      AACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCAC         >  SRR4302545.10734514/1‑94 (MQ=60)
                                                                                      AACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCAC         >  SRR4302545.1752701/1‑94 (MQ=60)
                                                                                       ACCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACG        <  SRR4302545.33762/94‑1 (MQ=60)
                                                                                        CCGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGG       >  SRR4302545.6619803/1‑94 (MQ=60)
                                                                                         CGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGC      >  SRR4302545.1951847/1‑94 (MQ=60)
                                                                                         CGACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGC      >  SRR4302545.6909541/1‑94 (MQ=60)
                                                                                          GACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCTTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGCA     >  SRR4302545.1456102/1‑94 (MQ=60)
                                                                                           ACCGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGCAT    <  SRR4302545.10263691/94‑1 (MQ=60)
                                                                                             CGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGCATTA  >  SRR4302545.10861198/1‑94 (MQ=60)
                                                                                             |                                                                                             
AATGCCGGACTGGCGCATCCCGCCACCTGTCATTTTCCGCCAGCGAATGGCACGTTTAATGTAATCACGATTACCGACGAGTAATGAACCGACTGGCGTCCCAAGACCTTTCGACAGGCAAATGGTGAACGAATCACAATATTGCGTGATCTCTTTCAGTTCGCAGCCGTAAGCCACCACGGCATTA  >  NC_000913/907819‑908005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑