Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
647 |
270.1 |
21258240 |
98.4% |
20918108 |
94.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,391 |
+C |
coding (474/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,391 | 1 | . | C | 99.5%
| 718.1
/ ‑4.1
| 211 | coding (474/516 nt) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (96/114); total (97/114) |
| Fisher's exact test for biased strand distribution p-value = 4.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
Only 100 of 252 total aligned reads displayed.
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAA‑GGCCATGCGCTGGAA‑G‑GCTGGC‑‑‑‑G‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT > NC_000913/4008299‑4008459
|
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑g < 2:2159849/94‑1 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑g < 1:3717193/94‑1 (MQ=255)
gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTT‑CAAAA‑GACCCTGCGCTGGAA‑g > 1:1159954/1‑94 (MQ=255)
ccTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑g < 1:1593911/93‑1 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gc < 2:10178825/94‑2 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gc < 2:1641849/94‑2 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gc < 1:7514854/94‑2 (MQ=255)
cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑AGCCATGCGCTGGAA‑gc > 2:8958609/1‑93 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gcg > 2:7905413/1‑92 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gcg < 1:7332984/94‑3 (MQ=255)
tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTT‑CAAAA‑CGCCATGCGCTGGAA‑gcg > 2:2825397/1‑92 (MQ=255)
cGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gcgg > 1:9949682/1‑91 (MQ=255)
cGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTT‑CAAAA‑GGCCATGCGCTGGAA‑gcgg > 1:882793/1‑91 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGGGGGGGTT‑CAAAA‑GGCCATGCGCTGGAA‑gcggt > 2:127100/1‑90 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gcggt < 2:895445/94‑5 (MQ=255)
gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑gcggt < 1:7037270/94‑5 (MQ=255)
ggCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGGA‑GCGGTGGC‑‑‑‑G‑‑‑‑a < 1:10385574/94‑1 (MQ=255)
ggCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑a > 2:5640730/1‑94 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aa > 2:8144401/1‑94 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aa < 1:2817236/94‑1 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aa < 2:3098867/94‑1 (MQ=255)
gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAAGGGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aa < 1:576873/94‑1 (MQ=255)
cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aag < 2:4432431/94‑2 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aagaa < 2:7118894/94‑4 (MQ=255)
aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑AGGCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aagaa > 2:3979568/1‑91 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aagaaa > 1:834521/1‑90 (MQ=255)
tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑G‑‑‑‑aagaaa > 2:5465632/1‑90 (MQ=255)
gTCTGGAAGTGATGGCGGGCGGCGTTTGA‑AAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:5460470/1‑94 (MQ=255)
gTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 2:6030018/94‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt > 1:790202/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt < 1:5051237/94‑2 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 2:5695884/94‑3 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 2:5958420/1‑92 (MQ=255)
cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg > 2:6194405/1‑92 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 1:4852832/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 1:4485585/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg > 1:8323723/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg < 1:9467560/94‑4 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttgg < 2:6631985/94‑4 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:8511693/94‑5 (MQ=255)
gATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACggg < 1:1219882/94‑1 (MQ=255)
gATGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGACTGAAGGATTGTATTGCGTTTGGTGACggg > 2:4202765/1‑94 (MQ=255)
aTGGCGGGCGGCGTTT‑CAAAA‑AGCCATGCGCTGGGA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACgggg > 2:4647869/1‑93 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:10271385/94‑1 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt > 2:10109989/1‑94 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:4573594/94‑1 (MQ=255)
tGGCGGGCGGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt > 1:7783819/1‑94 (MQ=255)
ggcgggcgGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg < 2:1352777/94‑1 (MQ=255)
ggcgggcgGCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATg > 1:1980290/1‑94 (MQ=255)
cgggcggCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:9856631/94‑1 (MQ=255)
cgggcggCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa > 2:8736980/1‑94 (MQ=255)
cgggcggCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa > 2:4511526/1‑94 (MQ=255)
cgggcggCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa > 2:2262793/1‑94 (MQ=255)
cgggcggCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:1885333/94‑1 (MQ=255)
gggcggCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaag > 2:3717254/1‑93 (MQ=255)
gggcggCGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 2:6723938/94‑1 (MQ=255)
ggcggcGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg > 1:10299843/1‑94 (MQ=255)
ggcggcGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg < 2:3462535/94‑1 (MQ=255)
ggcggcGTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg < 2:799367/94‑1 (MQ=255)
gcggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:5201171/94‑1 (MQ=255)
gcggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:9298965/94‑1 (MQ=255)
gcggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga > 2:6573983/1‑94 (MQ=255)
gggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:2430425/93‑1 (MQ=255)
cggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GCAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac > 2:492205/1‑94 (MQ=255)
cggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:614204/94‑1 (MQ=255)
cggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 1:1914560/94‑1 (MQ=255)
cggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgac < 2:4749689/94‑1 (MQ=255)
ggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg < 2:745645/94‑1 (MQ=255)
ggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:3482095/1‑94 (MQ=255)
ggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:4117323/1‑94 (MQ=255)
ggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:4820196/1‑94 (MQ=255)
ggcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacc > 2:10361702/1‑93 (MQ=255)
gcgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 2:3943776/94‑1 (MQ=255)
cgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGGTGAACGACGcc > 1:8688707/1‑94 (MQ=255)
cgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc < 2:4805074/94‑1 (MQ=255)
cgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc < 2:3133526/94‑1 (MQ=255)
cgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:9058941/1‑94 (MQ=255)
cgTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc > 2:9201656/1‑94 (MQ=255)
gTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg > 1:7662318/1‑94 (MQ=255)
gTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg > 2:4874566/1‑94 (MQ=255)
gTTT‑CAAAA‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCg > 2:3693511/1‑94 (MQ=255)
ttcaaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGCACGACGCCCaa > 1:2731701/5‑94 (MQ=255)
ttcaaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa > 2:7233226/5‑94 (MQ=255)
tcaaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa > 2:4588664/4‑94 (MQ=255)
tcaaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa > 1:4648492/4‑94 (MQ=255)
caaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 1:8151447/92‑1 (MQ=255)
caaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:1724717/3‑94 (MQ=255)
caaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 1:2514554/92‑1 (MQ=255)
caaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 1:2292684/92‑1 (MQ=255)
caaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 2:415905/92‑1 (MQ=255)
caaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 2:5117278/92‑1 (MQ=255)
aaaa‑GGCCATGCGCTGGAAGG‑GGTGGCGAAGG‑‑‑‑AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAtc > 2:865845/2‑93 (MQ=255)
aaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg < 2:705039/93‑1 (MQ=255)
aaaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 1:5472649/2‑94 (MQ=255)
aaa‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc < 1:1012806/94‑1 (MQ=255)
a‑GGCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCCACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 2:2778903/94‑1 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt < 2:3587287/94‑1 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt > 1:3013830/1‑94 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt < 1:6686780/94‑1 (MQ=255)
ggCCATGCGCTGGAA‑GCGGTGGC‑‑‑‑GAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGt > 2:2802623/1‑94 (MQ=255)
|
GCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAA‑GGCCATGCGCTGGAA‑G‑GCTGGC‑‑‑‑G‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGT > NC_000913/4008299‑4008459
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAA‑GGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCG > NC_000913/4008309‑4008461
|
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AA < SRR4302545.2885434/94‑1 (MQ=60)
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAA‑GGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AA < SRR4302545.5624836/94‑1 (MQ=60)
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑AA < SRR4302545.589885/94‑1 (MQ=60)
tcaAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAA > SRR4302545.4767244/4‑94 (MQ=16)
caAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302545.8579375/92‑1 (MQ=18)
caAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302545.8480524/92‑1 (MQ=18)
caAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302545.8435863/92‑1 (MQ=18)
caAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302545.2348517/92‑1 (MQ=18)
caAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302545.2354825/3‑94 (MQ=18)
caAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302545.2575333/92‑1 (MQ=18)
caAAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAT < SRR4302545.8387026/92‑1 (MQ=18)
A‑AAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302545.4910112/1‑94 (MQ=19)
A‑AAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302545.874445/1‑94 (MQ=19)
A‑AAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302545.5616317/1‑94 (MQ=19)
A‑AAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302545.3592584/1‑94 (MQ=19)
A‑AAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATG > SRR4302545.312860/1‑94 (MQ=19)
AAA‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGC < SRR4302545.1035173/94‑1 (MQ=21)
A‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302545.5627053/94‑1 (MQ=23)
A‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302545.287453/1‑94 (MQ=23)
A‑GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302545.10720851/94‑1 (MQ=23)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT > SRR4302545.3087452/1‑94 (MQ=25)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGT < SRR4302545.6870088/94‑1 (MQ=25)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302545.5377252/94‑1 (MQ=26)
GCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTC < SRR4302545.7325608/94‑1 (MQ=26)
CCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG < SRR4302545.5176382/94‑1 (MQ=28)
CCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG < SRR4302545.1999026/94‑1 (MQ=28)
CCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG > SRR4302545.1430924/1‑94 (MQ=28)
CCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCG < SRR4302545.10756070/94‑1 (MQ=28)
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GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAA‑GGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCG > NC_000913/4008309‑4008461
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
